Non-Coding RNA Search

Ss1.1-Pig4-TMW8050L18.3

Sequence:


               
               GGCTATTACCTCATGGACCTGCGGGGACAGGGACCCCAGCTTTGGCCAATGCCACCCGGC
CAAAGCCAGAGCGGGAGACCCGTTGGCCGGGCTGGGTGGGGTCAGGAGCAGGAAGAGGGG
CAGGAAGGGAGCGATGAGGAAAAGAAGCTGAGGAATAGGGATCGGGAGACTCTAGAAGGA
TCTGGGGGAGGGAGGCAGTGCATCTGGGTATGAGTGGCTGGAAAGGAGGGAAGTGGGGGA
GCCCAGGATGTCAACAGGCCACTGGATGGGAGTGTCAGTGAAGTGGGGACAGGACGTGGA
GACAGTGCTGAGGAGCCAGAGCTAGTACGTGAGAGAGGGCAGTGAGGTGGGGAGGGAGAG
GAGAGAGGTCTCAGGTGGGGCTGGGGTGGGCCAGCTGCCAGCATCCCCAGAAGCGGGGAT
GAAGGAGAAGCTTGAAGGCTGGAGGCTGGAGGTAGTGGTCACTCAAGCGGCACTCTCCTC
CTGTCCCAGTGGATGCAGCTCTGGGTCCTCCATGCCAGCCCAAGGATGTCCCCATCGCCT
CTCCGTGGCCTTCACCCTTCTTCCCATTCATATTTATTTATTTATTGACTTTTATGAAGT
CTCACTACCATCCAGTTCCTATTGCCCATGTTGTCCTGACCCCCCCCCCCGCAATCCAGC
TGTCCGTGCAGCTGTCTGTCCGTCTGTCACAAGGAAAATAAAAATGGCAAGCCGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTATTACCTCATGGACCTGCGGGGACAGGGACCCCAGCTTTGGCCAATGCCACCCGGC
CAAAGCCAGAGCGGGAGACCCGTTGGCCGGGCTGGGTGGGGTCAGGAGCAGGAAGAGGGG
CAGGAAGGGAGCGATGAGGAAAAGAAGCTGAGGAATAGGGATCGGGAGACTCTAGAAGGA
TCTGGGGGAGGGAGGCAGTGCATCTGGGTATGAGTGGCTGGAAAGGAGGGAAGTGGGGGA
GCCCAGGATGTCAACAGGCCACTGGATGGGAGTGTCAGTGAAGTGGGGACAGGACGTGGA
GACAGTGCTGAGGAGCCAGAGCTAGTACGTGAGAGAGGGCAGTGAGGTGGGGAGGGAGAG
GAGAGAGGTCTCAGGTGGGGCTGGGGTGGGCCAGCTGCCAGCATCCCCAGAAGCGGGGAT
GAAGGAGAAGCTTGAAGGCTGGAGGCTGGAGGTAGTGGTCACTCAAGCGGCACTCTCCTC
CTGTCCCAGTGGATGCAGCTCTGGGTCCTCCATGCCAGCCCAAGGATGTCCCCATCGCCT
CTCCGTGGCCTTCACCCTTCTTCCCATTCATATTTATTTATTTATTGACTTTTATGAAGT
CTCACTACCATCCAGTTCCTATTGCCCATGTTGTCCTGACCCCCCCCCCCGCAATCCAGC
TGTCCGTGCAGCTGTCTGTCCGTCTGTCACAAGGAAAATAAAAATGGCAAGCCGCAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-144, + strand, RNAz p=0.74641
               

               
               475-594, - strand, RNAz p=0.718431

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-144, + strand, RNAz p=0.74641
               

               
               475-594, - strand, RNAz p=0.718431

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-716, gnl|bosTau2|chr2 (64373094-64372351)
               

               
               1-716, gnl|Hg17|chr2 (220183142-220183856)
               

               
               1-716, gnl|Mm7|chr1 (75657795-75658520)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-716, gnl|bosTau2|chr2 (64373094-64372351)
               

               
               1-716, gnl|Hg17|chr2 (220183142-220183856)
               

               
               1-716, gnl|Mm7|chr1 (75657795-75658520)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	39-144, + strand, RNAz p=0.74641
	475-594, - strand, RNAz p=0.718431

	1-716, gnl\|bosTau2\|chr2 (64373094-64372351)
	1-716, gnl\|Hg17\|chr2 (220183142-220183856)
	1-716, gnl\|Mm7\|chr1 (75657795-75658520)