Ss1.1-Pig4-TMW8050M14.3
|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCATGGCGACCCGTCTTTATTTTATTAGGAAGGAAACCACGAAGAAACCTGGCAGGAACA
CGCCAGAAACCCAGTGATCACACCCAGCCCACCTGCCAATGGAGGTCCCTTCCCTCTCAG
GCCAAAGACACAAACCCCAGTGTACTGCTTGTTGCTAGCACAACATCACCACAAACAATG
ACTCCAGCCAAGCAGGACAGACAGTAAACTACTTCCACAGCCCCCAAACTCGGGGAACTT
CCAGCTCCTGGCTGCTGCAGGGAGCCCCCCAGAGTCTGGGGAGGGAGCACTGGCTACACA
AAAGCACTATAAACAGCAAGGGGCCAAGGTGGAGACGTGAGAATAAATAAGGAGAAAGAG
GGAAGAGGAGGGGGCCTAGAACTCACGGCCCCATCCCTCGCAATGACCAAACCAACCCTG
GGAGATTCACCTACTGTCTACGCAGAATATATACACCTTATTGGTACAGAGAGGGGGTGA
GTGGCCCAGGGAAGACCCTCAGCAGGCTGAACATGGAGCCGACAGGCTCCGGGGAGCCGG
GGACTCATGCTACGTAACGAAGAGGGGGAGCCCTTCTGTCCAGCATGCCCCAAGCGGGAG
CTCGACACTCCCCAGGCGCAGGGTCACACGATCTGGGTCAGAGCGATGGTGGGGCCCTTG
TGGTCATCAAAGCGGTCCATGGTCTTGAGGCCGAGGATCATGTGCAGACCGTAGGTGAAG
ATGAAGAGCATGAAGAGCGAGGTGAGCAGCCCCATCCAGATGCCCGGGGAGAAGAAGCCG
GCGCAGTCACTGGCGTAGGAGAACCGCTCACCCGTCACGTTGAAGGCCTGGATCTGGAAG
TCCTGGAAAGTCAGCTGCCAGAGAGAGGGCTGTGTGCTGGGCACGAGCAGGTCGCCGTTC
TTGTTATGACTGTTGACGTACTCGCAGTGGAAGGAGTAGATGCTGGGCCCCGTGACCTGG
GAGGCATTGAAGGAGGCGATGGAGCCGTTGCTGTGGATTTCCAGGCGCTCCAGGGTAAAC
CAGTGCCGAGCAGACACCTGGTAGAAGCGGTTGGCCAGAATGAACTTGAATGTCACCATG
GTACCAAAGAGCTGATCATAGGTCAGCGCCAGCCAGGCAACAGAGTCATTCCAGAAGGAG
CCGGTGAGGTTGAGATCCTGGACCCCAAAGGTGAGGGAGGTCAGGTCCTCCCAGCGGCCC
CCGTATGCCACCGAGAAGTTCTGCGCCCAGAACAGGATCCGGGGGGCAGTGTCGTTGTAA
CTCACAGGCGGGTGGGTCGCAGCCGACGCCGACGGTCTCTGCAGCAACTGGCGACCTAGC
CCCCCAGCCACCATGGCTACATCGCGGGCCACCCTTGAAGGGCGGACGGCAGTGAGGGCT
GCCGTGTACGGGACCTCTTCGGACTTGAGTGTGCTCAGCACCTGCCCAATGACCTCATCA
TTGGCTGTGAGGACTTCCTTCGGCGCCATCAGTCCCGAGCTGGCTGTGTAGGGCAGGCGG
ATGAGCAGCAAGGCCGGGAGGCTGGCGTTGAGCTTCAGTTCACGAAGGGTGGCCAGGTCC
ACGTGCAGGGGACTGGCCCCGAGCTTCTCCTGCAGGTAGGTGGTCAGAGTGCTCACCGCG
TACCAGTCGACGGCGGGAAGGACCAGCGAGGAGGGGGCCAAGTCCAGGGCATTCTCCAGG
TTAGAAAAGGCGCTGTCCTGCTTGTTTCCAAACACGCCTCCGTAGGCTGTGAAGTCCTCG
ACGCTCAGCTTGTCTTGCAGGAACAGCAGCACGTTGCGGGGGCCCAGCTCCAGGGCGGGG
TCTAAGTAGGTAGACAGCTGCCTGTCGCTGGTGATATGGCCCTCGTGGGTGTTGGCTGCG
GGAGCCCACAGGTTTCGGTCACTCGACCACAGCACCAGCGGCACCTGCTGCTCCGCCGCC
GACGCCGCCGCCACCACCGCCACCGCCACCAGCGGCAGCCACGGCATCTGCCAGAGCGCC
GGACCCCGCCGCGTCCCCGCCCGCACCCGAGCCGCCGCGGCCGCCGCCATCATAACCTCT
CGGACTCCACTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCATGGCGACCCGTCTTTATTTTATTAGGAAGGAAACCACGAAGAAACCTGGCAGGAACA
CGCCAGAAACCCAGTGATCACACCCAGCCCACCTGCCAATGGAGGTCCCTTCCCTCTCAG
GCCAAAGACACAAACCCCAGTGTACTGCTTGTTGCTAGCACAACATCACCACAAACAATG
ACTCCAGCCAAGCAGGACAGACAGTAAACTACTTCCACAGCCCCCAAACTCGGGGAACTT
CCAGCTCCTGGCTGCTGCAGGGAGCCCCCCAGAGTCTGGGGAGGGAGCACTGGCTACACA
AAAGCACTATAAACAGCAAGGGGCCAAGGTGGAGACGTGAGAATAAATAAGGAGAAAGAG
GGAAGAGGAGGGGGCCTAGAACTCACGGCCCCATCCCTCGCAATGACCAAACCAACCCTG
GGAGATTCACCTACTGTCTACGCAGAATATATACACCTTATTGGTACAGAGAGGGGGTGA
GTGGCCCAGGGAAGACCCTCAGCAGGCTGAACATGGAGCCGACAGGCTCCGGGGAGCCGG
GGACTCATGCTACGTAACGAAGAGGGGGAGCCCTTCTGTCCAGCATGCCCCAAGCGGGAG
CTCGACACTCCCCAGGCGCAGGGTCACACGATCTGGGTCAGAGCGATGGTGGGGCCCTTG
TGGTCATCAAAGCGGTCCATGGTCTTGAGGCCGAGGATCATGTGCAGACCGTAGGTGAAG
ATGAAGAGCATGAAGAGCGAGGTGAGCAGCCCCATCCAGATGCCCGGGGAGAAGAAGCCG
GCGCAGTCACTGGCGTAGGAGAACCGCTCACCCGTCACGTTGAAGGCCTGGATCTGGAAG
TCCTGGAAAGTCAGCTGCCAGAGAGAGGGCTGTGTGCTGGGCACGAGCAGGTCGCCGTTC
TTGTTATGACTGTTGACGTACTCGCAGTGGAAGGAGTAGATGCTGGGCCCCGTGACCTGG
GAGGCATTGAAGGAGGCGATGGAGCCGTTGCTGTGGATTTCCAGGCGCTCCAGGGTAAAC
CAGTGCCGAGCAGACACCTGGTAGAAGCGGTTGGCCAGAATGAACTTGAATGTCACCATG
GTACCAAAGAGCTGATCATAGGTCAGCGCCAGCCAGGCAACAGAGTCATTCCAGAAGGAG
CCGGTGAGGTTGAGATCCTGGACCCCAAAGGTGAGGGAGGTCAGGTCCTCCCAGCGGCCC
CCGTATGCCACCGAGAAGTTCTGCGCCCAGAACAGGATCCGGGGGGCAGTGTCGTTGTAA
CTCACAGGCGGGTGGGTCGCAGCCGACGCCGACGGTCTCTGCAGCAACTGGCGACCTAGC
CCCCCAGCCACCATGGCTACATCGCGGGCCACCCTTGAAGGGCGGACGGCAGTGAGGGCT
GCCGTGTACGGGACCTCTTCGGACTTGAGTGTGCTCAGCACCTGCCCAATGACCTCATCA
TTGGCTGTGAGGACTTCCTTCGGCGCCATCAGTCCCGAGCTGGCTGTGTAGGGCAGGCGG
ATGAGCAGCAAGGCCGGGAGGCTGGCGTTGAGCTTCAGTTCACGAAGGGTGGCCAGGTCC
ACGTGCAGGGGACTGGCCCCGAGCTTCTCCTGCAGGTAGGTGGTCAGAGTGCTCACCGCG
TACCAGTCGACGGCGGGAAGGACCAGCGAGGAGGGGGCCAAGTCCAGGGCATTCTCCAGG
TTAGAAAAGGCGCTGTCCTGCTTGTTTCCAAACACGCCTCCGTAGGCTGTGAAGTCCTCG
ACGCTCAGCTTGTCTTGCAGGAACAGCAGCACGTTGCGGGGGCCCAGCTCCAGGGCGGGG
TCTAAGTAGGTAGACAGCTGCCTGTCGCTGGTGATATGGCCCTCGTGGGTGTTGGCTGCG
GGAGCCCACAGGTTTCGGTCACTCGACCACAGCACCAGCGGCACCTGCTGCTCCGCCGCC
GACGCCGCCGCCACCACCGCCACCGCCACCAGCGGCAGCCACGGCATCTGCCAGAGCGCC
GGACCCCGCCGCGTCCCCGCCCGCACCCGAGCCGCCGCGGCCGCCGCCATCATAACCTCT
CGGACTCCACTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
108-667, gnl|bosTau2|chrX (14735762-14736322) |
|
108-667, gnl|Hg17|chr4 (127906981-127906386) |
|
108-667, gnl|Mm7|chrX (69691257-69690697) |
| |
|
670-896, gnl|bosTau2|chrX (14736360-14736586) |
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670-896, gnl|Mm7|chrX (69690665-69690443) |
| |
|
1173-1413, gnl|bosTau2|chrX (14737644-14737887) |
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1173-1413, gnl|Hg17|chrX (153183640-153183400) |
|
1173-1413, gnl|Mm7|chrX (69689250-69689010) |
| |
|
1540-1735, gnl|bosTau2|chrX (14739640-14739835) |
|
1540-1735, gnl|Hg17|chrX (153181652-153181457) |
|
1540-1735, gnl|Mm7|chrX (69687420-69687225) |
| |
|
1936-2112, gnl|bosTau2|chrX (14743307-14743477) |
|
1936-2112, gnl|canFam2|chrX (125177237-125177458) |
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1936-2112, gnl|hg17|chrX (153177775-153178010) |
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1936-2112, gnl|Hg17|chrX (153178046-153177869) |
|
1936-2112, gnl|loxAfr1|scaffold_5536 (56869-57146) |
|
1936-2112, gnl|mm7|chrX (69683721-69683934) |
|
1936-2112, gnl|Mm7|chrX (69683970-69683807) |
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1936-2112, gnl|monDom2|scaffold_197 (264174-264445) |
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1936-2112, gnl|oryCun1|scaffold_206879 (56175-55940) |
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1936-2112, gnl|panTro1|chrX (158492836-158493071) |
|
1936-2112, gnl|rheMac2|chrX (152451014-152451252) |
|
1936-2112, gnl|rn3|chrX (160389909-160389709) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
108-667, gnl|bosTau2|chrX (14735762-14736322) |
|
108-667, gnl|Hg17|chr4 (127906981-127906386) |
|
108-667, gnl|Mm7|chrX (69691257-69690697) |
| |
|
670-896, gnl|bosTau2|chrX (14736360-14736586) |
|
670-896, gnl|Mm7|chrX (69690665-69690443) |
| |
|
1173-1413, gnl|bosTau2|chrX (14737644-14737887) |
|
1173-1413, gnl|Hg17|chrX (153183640-153183400) |
|
1173-1413, gnl|Mm7|chrX (69689250-69689010) |
| |
|
1540-1735, gnl|bosTau2|chrX (14739640-14739835) |
|
1540-1735, gnl|Hg17|chrX (153181652-153181457) |
|
1540-1735, gnl|Mm7|chrX (69687420-69687225) |
| |
|
1936-2112, gnl|bosTau2|chrX (14743307-14743477) |
|
1936-2112, gnl|canFam2|chrX (125177237-125177458) |
|
1936-2112, gnl|hg17|chrX (153177775-153178010) |
|
1936-2112, gnl|Hg17|chrX (153178046-153177869) |
|
1936-2112, gnl|loxAfr1|scaffold_5536 (56869-57146) |
|
1936-2112, gnl|mm7|chrX (69683721-69683934) |
|
1936-2112, gnl|Mm7|chrX (69683970-69683807) |
|
1936-2112, gnl|monDom2|scaffold_197 (264174-264445) |
|
1936-2112, gnl|oryCun1|scaffold_206879 (56175-55940) |
|
1936-2112, gnl|panTro1|chrX (158492836-158493071) |
|
1936-2112, gnl|rheMac2|chrX (152451014-152451252) |
|
1936-2112, gnl|rn3|chrX (160389909-160389709) |
|
ece (0.45861) |
|
eli (0.455443) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
ebs (0.354904) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
pla (0.267344) |
|
jca (0.22792) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
ton (0.1755) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
nca (0.136874) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
ece (0.45861) |
|
eli (0.455443) |
|
nmm (0.398406) |
|
cov (0.396458) |
|
ebs (0.354904) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
pla (0.267344) |
|
jca (0.22792) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
ton (0.1755) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
nca (0.136874) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
jej (0.0989218) |
