Ss1.1-Pig4-TMW8050M16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGTGTTCAAGCCGGAAGCTCCCGCTGGGGCTGGAGAGTCCTGAGGATGGAAACCCAGA TGGAGGCTCAGAGCCCCTTAGCCGAGGACGGCTTCACCCAGGTCACCCGCAAGGGTAGCC GAAGGGCGAAGAAACGGCAGGCTGAGCAGCTGTCTGCGACGGAGGAAGGAGGGGGCGCGA GCCACATGGACACGGAAGAGGCTCGGCCGGCGAAGAGGCCCATCTTCCCTCCCCTCTCCG GGGACGGGTTCTTGAGTGGGAAAGAAGAAACTAGGAAAATTCCAGTTCCTGCTAACAGGT ACACGCCGTTAAAAGAGAATTGGATGAAGATATTTACTCCTATTGTGGAGCATTTGGGAC TTCAGATACGCTTTAACTTGAAATCGAGGAATGTAGAAATCAGGACTTGTAAAGAAACTA AGGATGTTAGCGCTCTGACAAAAGCAGCTGATTTTGTGAAAGCCTTTATTCTTGGATTTC AGGTGGAGGACGCACTTGCCCTTGTGAGGTTGGATGACCTCTTCCTAGAAACTTTTGAAA TTACAGATGTTAAGCCCTTGAAAGGAGACCACCTGTCGAGGGCAATAGGCAGAATTGCTG GCAAAGGAGGAAAAACCAAATTCACCATTGAGAACGTGACCCGGACGCGGATAGTTTTGG CTGATGTGAAAGTTCACATCCTTGGTTCTTTCCAGAACATCAAGATGGCGAGAACTGCCA TTTGCAACCTTATCCTAGGGAATCCTCCATCGAAGGTTTACGGCAACATTCGCGCCGTGG CTAGCAGAGCGGCAGACCGATTCTGATTTCACATCAGAGCGTCTCACCTTGTATTTAGAC TCCAGAGAAAAAGGCTTTCCCCTCCACCAGCGGTCACCAGACACCACATGAAGAACTTTT CAGTCATGAATACCATTATTATACTTGTACATTAAGTATAATTTATCATGTCTTCTATTT TAAATCACATGTAGCAGATTTGCATAGTTTATAATCCTCATTTGGATGGAAACTCATTCA AAAAACAGTTCTGTATCGGTTTCTAACTTTATTTATAAGTTTATAACTTCTTATAATTTG TTATACATTTATACTTTTTCTCTGTGAGGTGTAATTAAAAGAATTACCTGGGAGTTCCTG CTATGACACAGCAGGTGAAGTATCTAGTGTTGTCTCTGGGCAGTGTGGGTTCAATCCCTG CCCTCGCTCAGTGGGTTAAGGATCCCACGTTGCCACAGCTGTGGCTTGGATTCAAGCCCT GGCCCAGGAACTTCAAAGCCAAAAAAAAAAACCAAAAACGGATTATCTCAGAAAATCTCT CCAAAACGTGATCCTTAATGCTGGCTGGTGTATAAATATTTTAGAATCAGTCATAGGCAG CAGTGTGGATGTACTATGTGAACTTCTAATCTTTGTACCTGTTTTTGCTGTTTGTAAAAT TAAAGACTACACTACAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGTGTTCAAGCCGGAAGCTCCCGCTGGGGCTGGAGAGTCCTGAGGATGGAAACCCAGA TGGAGGCTCAGAGCCCCTTAGCCGAGGACGGCTTCACCCAGGTCACCCGCAAGGGTAGCC GAAGGGCGAAGAAACGGCAGGCTGAGCAGCTGTCTGCGACGGAGGAAGGAGGGGGCGCGA GCCACATGGACACGGAAGAGGCTCGGCCGGCGAAGAGGCCCATCTTCCCTCCCCTCTCCG GGGACGGGTTCTTGAGTGGGAAAGAAGAAACTAGGAAAATTCCAGTTCCTGCTAACAGGT ACACGCCGTTAAAAGAGAATTGGATGAAGATATTTACTCCTATTGTGGAGCATTTGGGAC TTCAGATACGCTTTAACTTGAAATCGAGGAATGTAGAAATCAGGACTTGTAAAGAAACTA AGGATGTTAGCGCTCTGACAAAAGCAGCTGATTTTGTGAAAGCCTTTATTCTTGGATTTC AGGTGGAGGACGCACTTGCCCTTGTGAGGTTGGATGACCTCTTCCTAGAAACTTTTGAAA TTACAGATGTTAAGCCCTTGAAAGGAGACCACCTGTCGAGGGCAATAGGCAGAATTGCTG GCAAAGGAGGAAAAACCAAATTCACCATTGAGAACGTGACCCGGACGCGGATAGTTTTGG CTGATGTGAAAGTTCACATCCTTGGTTCTTTCCAGAACATCAAGATGGCGAGAACTGCCA TTTGCAACCTTATCCTAGGGAATCCTCCATCGAAGGTTTACGGCAACATTCGCGCCGTGG CTAGCAGAGCGGCAGACCGATTCTGATTTCACATCAGAGCGTCTCACCTTGTATTTAGAC TCCAGAGAAAAAGGCTTTCCCCTCCACCAGCGGTCACCAGACACCACATGAAGAACTTTT CAGTCATGAATACCATTATTATACTTGTACATTAAGTATAATTTATCATGTCTTCTATTT TAAATCACATGTAGCAGATTTGCATAGTTTATAATCCTCATTTGGATGGAAACTCATTCA AAAAACAGTTCTGTATCGGTTTCTAACTTTATTTATAAGTTTATAACTTCTTATAATTTG TTATACATTTATACTTTTTCTCTGTGAGGTGTAATTAAAAGAATTACCTGGGAGTTCCTG CTATGACACAGCAGGTGAAGTATCTAGTGTTGTCTCTGGGCAGTGTGGGTTCAATCCCTG CCCTCGCTCAGTGGGTTAAGGATCCCACGTTGCCACAGCTGTGGCTTGGATTCAAGCCCT GGCCCAGGAACTTCAAAGCCAAAAAAAAAAACCAAAAACGGATTATCTCAGAAAATCTCT CCAAAACGTGATCCTTAATGCTGGCTGGTGTATAAATATTTTAGAATCAGTCATAGGCAG CAGTGTGGATGTACTATGTGAACTTCTAATCTTTGTACCTGTTTTTGCTGTTTGTAAAAT TAAAGACTACACTACAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 52-159, - strand, RNAz p=0.628569 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 52-159, - strand, RNAz p=0.628569 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-254, gnl|bosTau2|chr11 (48111116-48111368) | |
| 1-254, gnl|canFam2|chr10 (70384349-70384639) | |
| 1-254, gnl|dasNov1|scaffold_123922 (2021-2305) | |
| 1-254, gnl|echTel1|scaffold_315979 (46150-45879) | |
| 1-254, gnl|hg17|chr2 (68296592-68296855) | |
| 1-254, gnl|Hg17|chr2 (68296680-68296924) | |
| 1-254, gnl|loxAfr1|scaffold_76948 (4975-4698) | |
| 1-254, gnl|mm7|chr11 (17163650-17163393) | |
| 1-254, gnl|Mm7|chr11 (17163561-17163322) | |
| 1-254, gnl|monDom2|scaffold_1 (34707153-34707404) | |
| 1-254, gnl|oryCun1|scaffold_97915 (16019-16301) | |
| 1-254, gnl|panTro1|chr12 (70543508-70543771) | |
| 1-254, gnl|rheMac2|chr13 (68425063-68425326) | |
| 1-254, gnl|rn3|chr14 (98130222-98129965) | |
| 1-254, gnl|xenTro1|scaffold_112 (1173334-1173555) | |
| 549-673, gnl|bosTau2|chr11 (48114462-48114586) | |
| 549-673, gnl|canFam2|chr10 (70388469-70388604) | |
| 549-673, gnl|danRer3|chr14 (22503756-22503619) | |
| 549-673, gnl|dasNov1|scaffold_93775 (5408-5520) | |
| 549-673, gnl|echTel1|scaffold_166940 (5466-5589) | |
| 549-673, gnl|galGal2|chr3 (5946922-5946794) | |
| 549-673, gnl|hg17|chr2 (68301329-68301464) | |
| 549-673, gnl|Hg17|chr2 (68301328-68301452) | |
| 549-673, gnl|loxAfr1|scaffold_44251 (15087-14952) | |
| 549-673, gnl|mm7|chr11 (17160917-17160783) | |
| 549-673, gnl|Mm7|chr11 (17160916-17160792) | |
| 549-673, gnl|monDom2|scaffold_1 (34719999-34720134) | |
| 549-673, gnl|oryCun1|scaffold_206222 (67613-67744) | |
| 549-673, gnl|panTro1|chr12_random (25266459-25266594) | |
| 549-673, gnl|rheMac2|chr13 (68428937-68429072) | |
| 549-673, gnl|rn3|chr14 (98127196-98127061) | |
| 549-673, gnl|tetNig1|chr17 (10236393-10236527) | |
| 549-673, gnl|xenTro1|scaffold_112 (1178799-1178924) | |
| 737-1129, gnl|bosTau2|chr11 (48119972-48120355) | |
| 737-1129, gnl|Hg17|chr2 (68313516-68313993) | |
| 1296-1458, gnl|bosTau2|chr11 (48120343-48120512) | |
| 1296-1458, gnl|Mm7|chr11 (17155621-17155452) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-254, gnl|bosTau2|chr11 (48111116-48111368) | |
| 1-254, gnl|canFam2|chr10 (70384349-70384639) | |
| 1-254, gnl|dasNov1|scaffold_123922 (2021-2305) | |
| 1-254, gnl|echTel1|scaffold_315979 (46150-45879) | |
| 1-254, gnl|hg17|chr2 (68296592-68296855) | |
| 1-254, gnl|Hg17|chr2 (68296680-68296924) | |
| 1-254, gnl|loxAfr1|scaffold_76948 (4975-4698) | |
| 1-254, gnl|mm7|chr11 (17163650-17163393) | |
| 1-254, gnl|Mm7|chr11 (17163561-17163322) | |
| 1-254, gnl|monDom2|scaffold_1 (34707153-34707404) | |
| 1-254, gnl|oryCun1|scaffold_97915 (16019-16301) | |
| 1-254, gnl|panTro1|chr12 (70543508-70543771) | |
| 1-254, gnl|rheMac2|chr13 (68425063-68425326) | |
| 1-254, gnl|rn3|chr14 (98130222-98129965) | |
| 1-254, gnl|xenTro1|scaffold_112 (1173334-1173555) | |
| 549-673, gnl|bosTau2|chr11 (48114462-48114586) | |
| 549-673, gnl|canFam2|chr10 (70388469-70388604) | |
| 549-673, gnl|danRer3|chr14 (22503756-22503619) | |
| 549-673, gnl|dasNov1|scaffold_93775 (5408-5520) | |
| 549-673, gnl|echTel1|scaffold_166940 (5466-5589) | |
| 549-673, gnl|galGal2|chr3 (5946922-5946794) | |
| 549-673, gnl|hg17|chr2 (68301329-68301464) | |
| 549-673, gnl|Hg17|chr2 (68301328-68301452) | |
| 549-673, gnl|loxAfr1|scaffold_44251 (15087-14952) | |
| 549-673, gnl|mm7|chr11 (17160917-17160783) | |
| 549-673, gnl|Mm7|chr11 (17160916-17160792) | |
| 549-673, gnl|monDom2|scaffold_1 (34719999-34720134) | |
| 549-673, gnl|oryCun1|scaffold_206222 (67613-67744) | |
| 549-673, gnl|panTro1|chr12_random (25266459-25266594) | |
| 549-673, gnl|rheMac2|chr13 (68428937-68429072) | |
| 549-673, gnl|rn3|chr14 (98127196-98127061) | |
| 549-673, gnl|tetNig1|chr17 (10236393-10236527) | |
| 549-673, gnl|xenTro1|scaffold_112 (1178799-1178924) | |
| 737-1129, gnl|bosTau2|chr11 (48119972-48120355) | |
| 737-1129, gnl|Hg17|chr2 (68313516-68313993) | |
| 1296-1458, gnl|bosTau2|chr11 (48120343-48120512) | |
| 1296-1458, gnl|Mm7|chr11 (17155621-17155452) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| tbr (0.462535) | |
| kid (0.389206) | |
| elu (0.385356) | |
| gul (0.355177) | |
| fco (0.314416) | |
| fce (0.271592) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mga (0.160205) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.462535) | |
| kid (0.389206) | |
| elu (0.385356) | |
| gul (0.355177) | |
| fco (0.314416) | |
| fce (0.271592) | |
| pgl (0.236967) | |
| tes (0.207814) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mga (0.160205) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| ldo (0.0970026) |