Non-Coding RNA Search

Ss1.1-Pig4-TMW8050M17.3

Sequence:


               
               TTTGCATATATCGATATATACATGAAGAGGCTTTATGTCTTCTGATATTTGATTTTTGAA
TGTGTTTTTAAGTCAGTGGTGCCTTTAGGCAAGAAACTTCAGAATTAATCATTCTTTGTT
TGGGTTTTCTGATTTTTCAGGTAACGTAAACTATTTAGAAACCGTCACTAGTTACTAACT
TCATTCACCTAAGAAATTGATTGTTGATTTAAATATAACAGATGGGCATTTCCTACAATT
AGAGTGTTCTGAATAGTTGCTGAAAGTAATTGTGCCATTGACCAATGGATGCACTTCGTT
AGCCTTAATTTTTTTTTTAAGAAAACATTTAAAACTTTATTAAATATTTCATTTCCCTAA
TTTAAAGTTTGTGCTGCTGATGTTTGGAAAAAATCAGTTAAGTGCTACCCAGAAAGTGTA
CCAACTTTTTAAAAATGAAGAACAATGTAAAATTACACAATCTAAAATTTTAATTTGTGC
AATATTTTCATTTAATGCATGTGTATTTGAGTAATTGTAAAATAAATGAATTTTTAATGT
TTTGAGATCTAGTTTAAACTGTCTTCTTAACCCAACAACTTACATTCCGTTGTTGCTGCA
TCCTTTTATTTAAGGACTTGTTTTAAAAGTCTTTTTGTCACTCCTTGTAAAATTCTTTTG
TTATTAGTAAATTTTGCTTATAGGAGAATGGCTCCTGTTATTACAAGGGAAAAATACAAA
GAGCACATTTTAGGATTATAATTGTTAAAAGATAACTTGTGCATATCATTGTACAGTAAG
TGTCAACTGTGTGCCTAACTATTCTATCAATACTTCTTTAACAAAGAAGAAACAACAATC
AGAATGTCAGTTATTTTTATTGAACTAAAAAGATTAAAGATTTTTTTGGTTTGCGTTATA
TTCTGTCCATTAGAAAATACTAATAAAGTATTAACAAACAAAAAAAAAAAAAAAACGAAA
AAAGAAAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCATATATCGATATATACATGAAGAGGCTTTATGTCTTCTGATATTTGATTTTTGAA
TGTGTTTTTAAGTCAGTGGTGCCTTTAGGCAAGAAACTTCAGAATTAATCATTCTTTGTT
TGGGTTTTCTGATTTTTCAGGTAACGTAAACTATTTAGAAACCGTCACTAGTTACTAACT
TCATTCACCTAAGAAATTGATTGTTGATTTAAATATAACAGATGGGCATTTCCTACAATT
AGAGTGTTCTGAATAGTTGCTGAAAGTAATTGTGCCATTGACCAATGGATGCACTTCGTT
AGCCTTAATTTTTTTTTTAAGAAAACATTTAAAACTTTATTAAATATTTCATTTCCCTAA
TTTAAAGTTTGTGCTGCTGATGTTTGGAAAAAATCAGTTAAGTGCTACCCAGAAAGTGTA
CCAACTTTTTAAAAATGAAGAACAATGTAAAATTACACAATCTAAAATTTTAATTTGTGC
AATATTTTCATTTAATGCATGTGTATTTGAGTAATTGTAAAATAAATGAATTTTTAATGT
TTTGAGATCTAGTTTAAACTGTCTTCTTAACCCAACAACTTACATTCCGTTGTTGCTGCA
TCCTTTTATTTAAGGACTTGTTTTAAAAGTCTTTTTGTCACTCCTTGTAAAATTCTTTTG
TTATTAGTAAATTTTGCTTATAGGAGAATGGCTCCTGTTATTACAAGGGAAAAATACAAA
GAGCACATTTTAGGATTATAATTGTTAAAAGATAACTTGTGCATATCATTGTACAGTAAG
TGTCAACTGTGTGCCTAACTATTCTATCAATACTTCTTTAACAAAGAAGAAACAACAATC
AGAATGTCAGTTATTTTTATTGAACTAAAAAGATTAAAGATTTTTTTGGTTTGCGTTATA
TTCTGTCCATTAGAAAATACTAATAAAGTATTAACAAACAAAAAAAAAAAAAAAACGAAA
AAAGAAAAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               539-736, + strand, RNAz p=0.897151

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-736, + strand, RNAz p=0.897151

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               539-961, gnl|bosTau2|chr1 (60407899-60407471)
               

               
               539-961, gnl|Hg17|chr7 (17604020-17603622)
               

               
               539-961, gnl|Mm7|chr12 (32995544-32995930)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               539-961, gnl|bosTau2|chr1 (60407899-60407471)
               

               
               539-961, gnl|Hg17|chr7 (17604020-17603622)
               

               
               539-961, gnl|Mm7|chr12 (32995544-32995930)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pro (0.512033)
               

               
               fco (0.471624)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               ret (0.257467)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	539-961, gnl\|bosTau2\|chr1 (60407899-60407471)
	539-961, gnl\|Hg17\|chr7 (17604020-17603622)
	539-961, gnl\|Mm7\|chr12 (32995544-32995930)

	pro (0.512033)
	fco (0.471624)
	ret (0.257467)
	hea (0.204499)
	sag (0.182715)
	mcp (0.170648)
	bfe (0.149858)
	lin (0.145603)
	hlv (0.139256)
	kid (0.129735)
	eru (0.120048)
	ecc (0.115035)
	ldo (0.0970026)