Non-Coding RNA Search

Ss1.1-Pig4-TMW8050N04.3

Sequence:


               
               ACGAAGTTTTCTCCTGTGACTTCCCGAGGATCGCTCTCTAGCTCTAGGACTCGCCTTCTG
GCGGACTTGATCGGTTTATTTTGGGAGATAACTTGCCTCGCTCCCATCTCCATCCCCTTT
CCTTGACCCCTTCCAGTCGGACGTTCTAGATGCCTGAATGGAGTTTTGAGTTGGACTCTT
GTGTCCCTTACGGAGTCGGGCCTGATCCCAGAGCGCCGGGGGTGGGGTGGAGGTGTTACT
GTAAAATGCAAGTTGGATAAAAGGAGGACCTCTCGCCAAGGGCCCCAATGAGTGGCACAC
AGTCTACTATCACCGACAGGTTTCCCCTCAAAAAACCTATAAGGCATGGAAGTATTTTGA
ACCGAGAGTCACCAACAGATAAGAAGCAGAAAGTTGAGCGCAGTACATCACATGATTTTG
ATCCCACAGATAGCTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGATCCGAAA
TATATGGTCTTGTTCAGCGTTGCGTGATCATCCAGAAGGATGACAATGGATTTGGGCTGA
CGGTCAGTGGAGACAATCCAGTGTTCGTACAGTCTGTCAAAGAAGATGGAGCAGCCATGC
GGGCTGGAGTACAGACAGGTGATCGAATCATCAAGGTGAATGGAACTCTGGTGACTCATT
CAAACCATTTGGAAGTGGTGAAGCTAATCAAATCGGGTTCCTATGTAGCTCTCACTGTTC
AGGGACGCCCACCAGGGTCGCCCCAGATTCCACTCGCTGATTCTGAAGTAGAACCATCAG
TCATTGGACATATGTCTCCCATCATGACATCCCCTCATTCACCTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAAGTTTTCTCCTGTGACTTCCCGAGGATCGCTCTCTAGCTCTAGGACTCGCCTTCTG
GCGGACTTGATCGGTTTATTTTGGGAGATAACTTGCCTCGCTCCCATCTCCATCCCCTTT
CCTTGACCCCTTCCAGTCGGACGTTCTAGATGCCTGAATGGAGTTTTGAGTTGGACTCTT
GTGTCCCTTACGGAGTCGGGCCTGATCCCAGAGCGCCGGGGGTGGGGTGGAGGTGTTACT
GTAAAATGCAAGTTGGATAAAAGGAGGACCTCTCGCCAAGGGCCCCAATGAGTGGCACAC
AGTCTACTATCACCGACAGGTTTCCCCTCAAAAAACCTATAAGGCATGGAAGTATTTTGA
ACCGAGAGTCACCAACAGATAAGAAGCAGAAAGTTGAGCGCAGTACATCACATGATTTTG
ATCCCACAGATAGCTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGATCCGAAA
TATATGGTCTTGTTCAGCGTTGCGTGATCATCCAGAAGGATGACAATGGATTTGGGCTGA
CGGTCAGTGGAGACAATCCAGTGTTCGTACAGTCTGTCAAAGAAGATGGAGCAGCCATGC
GGGCTGGAGTACAGACAGGTGATCGAATCATCAAGGTGAATGGAACTCTGGTGACTCATT
CAAACCATTTGGAAGTGGTGAAGCTAATCAAATCGGGTTCCTATGTAGCTCTCACTGTTC
AGGGACGCCCACCAGGGTCGCCCCAGATTCCACTCGCTGATTCTGAAGTAGAACCATCAG
TCATTGGACATATGTCTCCCATCATGACATCCCCTCATTCACCTGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D7D6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D7D6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-229, + strand, RNAz p=0.72824

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-229, + strand, RNAz p=0.72824

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-322, gnl|bosTau2|chr15 (14703561-14703240)
               

               
               1-322, gnl|Hg17|chr11 (119712874-119713197)
               

               
               1-322, gnl|Mm7|chr9 (43039869-43039546)
               


               
               691-826, gnl|bosTau2|chr15 (14557208-14557073)
               

               
               691-826, gnl|canFam2|chr5 (16582336-16582208)
               

               
               691-826, gnl|danRer3|chr15 (24065707-24065838)
               

               
               691-826, gnl|dasNov1|scaffold_13967 (4629-4757)
               

               
               691-826, gnl|echTel1|scaffold_211086 (1668-1540)
               

               
               691-826, gnl|fr1|chrUn (210660529-210660639)
               

               
               691-826, gnl|galGal2|chr24 (3642481-3642353)
               

               
               691-826, gnl|hg17|chr11 (119803987-119804115)
               

               
               691-826, gnl|Hg17|chr11 (119803985-119804120)
               

               
               691-826, gnl|mm7|chr9 (42955156-42955028)
               

               
               691-826, gnl|Mm7|chr9 (42955156-42955021)
               

               
               691-826, gnl|monDom2|scaffold_2 (117229495-117229367)
               

               
               691-826, gnl|panTro1|chr9 (121840946-121841074)
               

               
               691-826, gnl|rheMac2|chr14 (118840443-118840571)
               

               
               691-826, gnl|rn3|chr8 (46039044-46038916)
               

               
               691-826, gnl|tetNig1|chr16 (755089-755012)
               

               
               691-826, gnl|xenTro1|scaffold_75 (2022946-2023062)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-322, gnl|bosTau2|chr15 (14703561-14703240)
               

               
               1-322, gnl|Hg17|chr11 (119712874-119713197)
               

               
               1-322, gnl|Mm7|chr9 (43039869-43039546)
               


               
               691-826, gnl|bosTau2|chr15 (14557208-14557073)
               

               
               691-826, gnl|canFam2|chr5 (16582336-16582208)
               

               
               691-826, gnl|danRer3|chr15 (24065707-24065838)
               

               
               691-826, gnl|dasNov1|scaffold_13967 (4629-4757)
               

               
               691-826, gnl|echTel1|scaffold_211086 (1668-1540)
               

               
               691-826, gnl|fr1|chrUn (210660529-210660639)
               

               
               691-826, gnl|galGal2|chr24 (3642481-3642353)
               

               
               691-826, gnl|hg17|chr11 (119803987-119804115)
               

               
               691-826, gnl|Hg17|chr11 (119803985-119804120)
               

               
               691-826, gnl|mm7|chr9 (42955156-42955028)
               

               
               691-826, gnl|Mm7|chr9 (42955156-42955021)
               

               
               691-826, gnl|monDom2|scaffold_2 (117229495-117229367)
               

               
               691-826, gnl|panTro1|chr9 (121840946-121841074)
               

               
               691-826, gnl|rheMac2|chr14 (118840443-118840571)
               

               
               691-826, gnl|rn3|chr8 (46039044-46038916)
               

               
               691-826, gnl|tetNig1|chr16 (755089-755012)
               

               
               691-826, gnl|xenTro1|scaffold_75 (2022946-2023062)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tbr (0.154178)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)

	1-322, gnl\|bosTau2\|chr15 (14703561-14703240)
	1-322, gnl\|Hg17\|chr11 (119712874-119713197)
	1-322, gnl\|Mm7\|chr9 (43039869-43039546)

	691-826, gnl\|bosTau2\|chr15 (14557208-14557073)
	691-826, gnl\|canFam2\|chr5 (16582336-16582208)
	691-826, gnl\|danRer3\|chr15 (24065707-24065838)
	691-826, gnl\|dasNov1\|scaffold_13967 (4629-4757)
	691-826, gnl\|echTel1\|scaffold_211086 (1668-1540)
	691-826, gnl\|fr1\|chrUn (210660529-210660639)
	691-826, gnl\|galGal2\|chr24 (3642481-3642353)
	691-826, gnl\|hg17\|chr11 (119803987-119804115)
	691-826, gnl\|Hg17\|chr11 (119803985-119804120)
	691-826, gnl\|mm7\|chr9 (42955156-42955028)
	691-826, gnl\|Mm7\|chr9 (42955156-42955021)
	691-826, gnl\|monDom2\|scaffold_2 (117229495-117229367)
	691-826, gnl\|panTro1\|chr9 (121840946-121841074)
	691-826, gnl\|rheMac2\|chr14 (118840443-118840571)
	691-826, gnl\|rn3\|chr8 (46039044-46038916)
	691-826, gnl\|tetNig1\|chr16 (755089-755012)
	691-826, gnl\|xenTro1\|scaffold_75 (2022946-2023062)