Ss1.1-Pig4-TMW8050N11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCATGGACCTCTTCCCTCTGTCTGAGCTGGTGGAGTTCTTGGAAGCTAATGAGGTGC CTCGGCCCATCACCCTCAGGACCAATACGTTGAAGACCCGGCGCCGAGACCTTGCTCAGG CACTAATCAATCGTGGGGTTAACCTGGATCCCCTGGGCAAGTGGTCAAAGACTGGACTCG TGGTGTATGATTCCTCGGTGCCCATTGGTGCTACTCCTGAGTACTTGGCTGGGCACTACA TGCTACAGGGTGCGTCCAGCATGTTGCCTGTCATGGCCTTGGCGCCCCAGGAACACGAGC GGATTCTGGACATGTGTTGTGCCCCTGGAGGAAAGACCAGCTACATTGCCCAGCTCATGA AGAACACGGGTGTGATTCTCGCCAACGATGCCAATGCTGAGCGGCTCAAGAGTGTCGTGG GCAACTTGCACCGGCTGGGAGTCACCAACACCATCATCAGCAACTACGATGGGCGCCAGT TCCCCAAGGTGGTGGGGGGCTTTGACCGAGTCCTGCTGGATGCTCCTTGCAGTGGCACTG GGATCATCTCCAAGGACCCAGCTGTGAAGACTAACAAGGATGAGAAGGACATTCTGCGCT GTGCTCACCTTCAGAAGGAGCTGCTCCTGAGTGCTATCGACTCTGTCAGTGCCACCTCCA AGACAGGAGGCTACCTTGTGTACTGCACCTGCTCCATCACGGTGGAAGAGAATGAGTGGG TGGTAGACTACGCACTGAAGAAGAGGAATGTGCGGCTTGTGCCCACTGGCCTGGACTTCG GCCAGGAGGGCTTTACCCGCTTCCGGGAAAGGCGCTTCCACCCCACTCTGCGTTCTACCC GCCGCTTCTACCCTCACACCCACAACATGGATGGTTTCTTTATTGCCAAGTTCAAGAAGT TCTCCAATTCTATCCCCCAGTCCCAAACAGGAAATTCTGCAACATCAACCCCTACAAACC CAGACTTGCCCAGCCCGAAAGGGGAGGTGACTCCCAAGCCTGAGCGCAGCAGCCAGCCTG CCAAGAAGGCCAGAGTGGCTGTGCAAGCAAAGCAGCGGCTGCAGAAACGGCAACTTCCCA AGAAGGCTTCTTTCCAAAAGCAGAATGGCATCTCCAAAGGGACAGGCTCAGAATTGTCCA CTGTGTCTTCTGTCACAAAGGTCCAACCTTCCTCCAAGCTCCAGGATAGCAAGCAGCCAG CTGAGAAAGCAGTAGTGGTCAGGGAACCAAAGGTGGCTGGGAGACTAAAACAGTCACCCA AACTGCAGTCCTCCAAGAAAGTTGCCTTCCCAAAGCAGTGTGTTCCTCCCAAGGGCATGG ACCCAGAAATCCCTCCTGTGCCATCCCTCTCCAAGACCCAGGATGCTTTCAAGCCTGAGG ACCGCAATCAGCCCCTTGGAAACACCACCACAGGGGCTGAGAAGGTAAAGCAGCAGTTAC CAGAGCAATCTTTCAAGAAAACTGCCTTCCAGAAACAGAATGGCACCCCCAAGGGACCTA AGACTCCCACCATGTCCCCTCGCAGTTCTAGCAGGCCCCCACCAGCGAAGAGGAGAAAAT CGCAGTCCAGAGGCAGCAGCCAACCACTGCCGTCTTCAGTGGATGGTTGAACTAGACTGG GGTGGTTCATTGCCATTGTTACTAGGTTGGAGCTCTTACCTCCGTGAGGATGGCTTTCCC ACCGTGGATGTGAAATTTAATACACAATTTGCAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCATGGACCTCTTCCCTCTGTCTGAGCTGGTGGAGTTCTTGGAAGCTAATGAGGTGC CTCGGCCCATCACCCTCAGGACCAATACGTTGAAGACCCGGCGCCGAGACCTTGCTCAGG CACTAATCAATCGTGGGGTTAACCTGGATCCCCTGGGCAAGTGGTCAAAGACTGGACTCG TGGTGTATGATTCCTCGGTGCCCATTGGTGCTACTCCTGAGTACTTGGCTGGGCACTACA TGCTACAGGGTGCGTCCAGCATGTTGCCTGTCATGGCCTTGGCGCCCCAGGAACACGAGC GGATTCTGGACATGTGTTGTGCCCCTGGAGGAAAGACCAGCTACATTGCCCAGCTCATGA AGAACACGGGTGTGATTCTCGCCAACGATGCCAATGCTGAGCGGCTCAAGAGTGTCGTGG GCAACTTGCACCGGCTGGGAGTCACCAACACCATCATCAGCAACTACGATGGGCGCCAGT TCCCCAAGGTGGTGGGGGGCTTTGACCGAGTCCTGCTGGATGCTCCTTGCAGTGGCACTG GGATCATCTCCAAGGACCCAGCTGTGAAGACTAACAAGGATGAGAAGGACATTCTGCGCT GTGCTCACCTTCAGAAGGAGCTGCTCCTGAGTGCTATCGACTCTGTCAGTGCCACCTCCA AGACAGGAGGCTACCTTGTGTACTGCACCTGCTCCATCACGGTGGAAGAGAATGAGTGGG TGGTAGACTACGCACTGAAGAAGAGGAATGTGCGGCTTGTGCCCACTGGCCTGGACTTCG GCCAGGAGGGCTTTACCCGCTTCCGGGAAAGGCGCTTCCACCCCACTCTGCGTTCTACCC GCCGCTTCTACCCTCACACCCACAACATGGATGGTTTCTTTATTGCCAAGTTCAAGAAGT TCTCCAATTCTATCCCCCAGTCCCAAACAGGAAATTCTGCAACATCAACCCCTACAAACC CAGACTTGCCCAGCCCGAAAGGGGAGGTGACTCCCAAGCCTGAGCGCAGCAGCCAGCCTG CCAAGAAGGCCAGAGTGGCTGTGCAAGCAAAGCAGCGGCTGCAGAAACGGCAACTTCCCA AGAAGGCTTCTTTCCAAAAGCAGAATGGCATCTCCAAAGGGACAGGCTCAGAATTGTCCA CTGTGTCTTCTGTCACAAAGGTCCAACCTTCCTCCAAGCTCCAGGATAGCAAGCAGCCAG CTGAGAAAGCAGTAGTGGTCAGGGAACCAAAGGTGGCTGGGAGACTAAAACAGTCACCCA AACTGCAGTCCTCCAAGAAAGTTGCCTTCCCAAAGCAGTGTGTTCCTCCCAAGGGCATGG ACCCAGAAATCCCTCCTGTGCCATCCCTCTCCAAGACCCAGGATGCTTTCAAGCCTGAGG ACCGCAATCAGCCCCTTGGAAACACCACCACAGGGGCTGAGAAGGTAAAGCAGCAGTTAC CAGAGCAATCTTTCAAGAAAACTGCCTTCCAGAAACAGAATGGCACCCCCAAGGGACCTA AGACTCCCACCATGTCCCCTCGCAGTTCTAGCAGGCCCCCACCAGCGAAGAGGAGAAAAT CGCAGTCCAGAGGCAGCAGCCAACCACTGCCGTCTTCAGTGGATGGTTGAACTAGACTGG GGTGGTTCATTGCCATTGTTACTAGGTTGGAGCTCTTACCTCCGTGAGGATGGCTTTCCC ACCGTGGATGTGAAATTTAATACACAATTTGCAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 229-346, - strand, RNAz p=0.864409 | |
| 1364-1483, - strand, RNAz p=0.890958 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 229-346, - strand, RNAz p=0.864409 | |
| 1364-1483, - strand, RNAz p=0.890958 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 18-120, gnl|bosTau2|chr5 (60614312-60614414) | |
| 18-120, gnl|canFam2|chr27 (41476210-41476052) | |
| 18-120, gnl|danRer3|chrNA (75378110-75377969) | |
| 18-120, gnl|dasNov1|scaffold_4087 (126683-126836) | |
| 18-120, gnl|fr1|chrUn (74817526-74817397) | |
| 18-120, gnl|galGal2|chr1 (71050812-71050941) | |
| 18-120, gnl|hg17|chr12 (6542502-6542657) | |
| 18-120, gnl|Hg17|chr12 (6542609-6542507) | |
| 18-120, gnl|loxAfr1|scaffold_25340 (22691-22545) | |
| 18-120, gnl|mm7|chr6 (125163338-125163190) | |
| 18-120, gnl|Mm7|chr6 (125163232-125163334) | |
| 18-120, gnl|monDom2|scaffold_31 (14964510-14964649) | |
| 18-120, gnl|panTro1|chr10 (7077950-7078105) | |
| 18-120, gnl|rheMac2|chr11 (6714504-6714659) | |
| 18-120, gnl|rn3|chr4 (161503221-161503062) | |
| 18-120, gnl|tetNig1|chr8 (8885281-8885163) | |
| 18-120, gnl|xenTro1|scaffold_991 (23392-23240) | |
| 202-346, gnl|bosTau2|chr5 (60615314-60615458) | |
| 202-346, gnl|Hg17|chr12 (6541237-6541093) | |
| 202-346, gnl|Mm7|chr6 (125165409-125165553) | |
| 348-492, gnl|bosTau2|chr5 (60615944-60616088) | |
| 348-492, gnl|Hg17|chr12 (6540498-6540354) | |
| 577-704, gnl|bosTau2|chr5 (60616431-60616558) | |
| 577-704, gnl|canFam2|chr27 (41478542-41478361) | |
| 577-704, gnl|danRer3|chrNA (75363085-75363233) | |
| 577-704, gnl|dasNov1|scaffold_4087 (123229-123407) | |
| 577-704, gnl|echTel1|scaffold_319315 (59682-59510) | |
| 577-704, gnl|fr1|chrUn (74819141-74818983) | |
| 577-704, gnl|galGal2|chr1 (71046991-71047154) | |
| 577-704, gnl|hg17|chr12 (6539863-6540022) | |
| 577-704, gnl|Hg17|chr12 (6539998-6539871) | |
| 577-704, gnl|loxAfr1|scaffold_25340 (25130-24953) | |
| 577-704, gnl|mm7|chr6 (125166967-125166796) | |
| 577-704, gnl|Mm7|chr6 (125166830-125166957) | |
| 577-704, gnl|monDom2|scaffold_31 (14961879-14962035) | |
| 577-704, gnl|oryCun1|scaffold_199228 (103364-103537) | |
| 577-704, gnl|panTro1|chr10 (7075308-7075467) | |
| 577-704, gnl|rheMac2|chr11 (6711892-6712051) | |
| 577-704, gnl|rn3|chr4 (161505949-161505778) | |
| 577-704, gnl|tetNig1|chr8 (8886508-8886352) | |
| 577-704, gnl|xenTro1|scaffold_991 (24922-24766) | |
| 928-1716, gnl|bosTau2|chr5 (60618000-60618766) | |
| 928-1716, gnl|Hg17|chr12 (6537072-6536302) | |
| 928-1716, gnl|Mm7|chr6 (125169795-125170546) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-120, gnl|bosTau2|chr5 (60614312-60614414) | |
| 18-120, gnl|canFam2|chr27 (41476210-41476052) | |
| 18-120, gnl|danRer3|chrNA (75378110-75377969) | |
| 18-120, gnl|dasNov1|scaffold_4087 (126683-126836) | |
| 18-120, gnl|fr1|chrUn (74817526-74817397) | |
| 18-120, gnl|galGal2|chr1 (71050812-71050941) | |
| 18-120, gnl|hg17|chr12 (6542502-6542657) | |
| 18-120, gnl|Hg17|chr12 (6542609-6542507) | |
| 18-120, gnl|loxAfr1|scaffold_25340 (22691-22545) | |
| 18-120, gnl|mm7|chr6 (125163338-125163190) | |
| 18-120, gnl|Mm7|chr6 (125163232-125163334) | |
| 18-120, gnl|monDom2|scaffold_31 (14964510-14964649) | |
| 18-120, gnl|panTro1|chr10 (7077950-7078105) | |
| 18-120, gnl|rheMac2|chr11 (6714504-6714659) | |
| 18-120, gnl|rn3|chr4 (161503221-161503062) | |
| 18-120, gnl|tetNig1|chr8 (8885281-8885163) | |
| 18-120, gnl|xenTro1|scaffold_991 (23392-23240) | |
| 202-346, gnl|bosTau2|chr5 (60615314-60615458) | |
| 202-346, gnl|Hg17|chr12 (6541237-6541093) | |
| 202-346, gnl|Mm7|chr6 (125165409-125165553) | |
| 348-492, gnl|bosTau2|chr5 (60615944-60616088) | |
| 348-492, gnl|Hg17|chr12 (6540498-6540354) | |
| 577-704, gnl|bosTau2|chr5 (60616431-60616558) | |
| 577-704, gnl|canFam2|chr27 (41478542-41478361) | |
| 577-704, gnl|danRer3|chrNA (75363085-75363233) | |
| 577-704, gnl|dasNov1|scaffold_4087 (123229-123407) | |
| 577-704, gnl|echTel1|scaffold_319315 (59682-59510) | |
| 577-704, gnl|fr1|chrUn (74819141-74818983) | |
| 577-704, gnl|galGal2|chr1 (71046991-71047154) | |
| 577-704, gnl|hg17|chr12 (6539863-6540022) | |
| 577-704, gnl|Hg17|chr12 (6539998-6539871) | |
| 577-704, gnl|loxAfr1|scaffold_25340 (25130-24953) | |
| 577-704, gnl|mm7|chr6 (125166967-125166796) | |
| 577-704, gnl|Mm7|chr6 (125166830-125166957) | |
| 577-704, gnl|monDom2|scaffold_31 (14961879-14962035) | |
| 577-704, gnl|oryCun1|scaffold_199228 (103364-103537) | |
| 577-704, gnl|panTro1|chr10 (7075308-7075467) | |
| 577-704, gnl|rheMac2|chr11 (6711892-6712051) | |
| 577-704, gnl|rn3|chr4 (161505949-161505778) | |
| 577-704, gnl|tetNig1|chr8 (8886508-8886352) | |
| 577-704, gnl|xenTro1|scaffold_991 (24922-24766) | |
| 928-1716, gnl|bosTau2|chr5 (60618000-60618766) | |
| 928-1716, gnl|Hg17|chr12 (6537072-6536302) | |
| 928-1716, gnl|Mm7|chr6 (125169795-125170546) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ecc (0.115035) | |
| cty (0.10408) |