Ss1.1-Pig4-TMW8050N13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGTAAGCGAAACTCCTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTATAC AACTTTTGCAACTCCAGTTGTGTGGCTAAATTTCAGGCTCTCAGTGTGCAGTCATCTCCA AACGGCCAATTTGTAGCTCCAAGCGACATTCAGTTGAAGTGCAACTATTGCAAAAACTCG TTTTGTTCAAAGCCAGAAGTCCTGGAATGGGAGAACAAAGTGCATCAGTTCTGCAGCAAA ACTTGTTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGTCAA GAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGT GAAGGCTGCAAACTGTTGTACAAGCAGGATTTTGCCAGGCGTTTGGGACTGCGATGTGTG ACCTGCAACTATTGCTCTCAGCTGTGTAAGAAGGGGGCGGCCAAGGAGCTGGACGGCGTG GTGCGGGACTTCTGCAGTGAGGACTGCTGCCGCCGGTTCCAGGACTGGTACTACAAGGCT GCGAGGTGTGACTGCTGTAAATCGCAGGGCACACTCAGGGAGCGCGTGCAGTGGCGGGGA GAGATGAAGCATTTCTGTGACCAGCACTGCTTGTTACGCTTCTATTGTCAGCAAAACGAG CCCAACATGACCACGCAGAAAGGACCTGAAAACCTGCATTACGATCAGGGCTGTCAGACA TCCCGAACCAAAACGACAGGCTCCGCGCCGCCCCCCTCTCCGACCCCCGGCAAAGAGATG AAGAACAAAGCAGTTCTGTGCAAACCGCTGACGATGACGAAGGCGACGTACTGCAAACCT CACATGCAGAGCAAGTCTTGTCAGACAGATGAAGGCTGGAGGCCGGAGCGGGTCCCGGTG CCCATCCCCGTGCCCGTGTACATCCCGGTGCCCATGCACATGTACAGCCAGAGCGTCCCC GTGCCCACCACCGTCCCCGTGCCTGTGCCAGTTCCTGTTTTCCTGCCGGCCCCCTTGGAC AGCAGCGAGAGGATCCCTGCCGTGGTGGAGGAGCTGAAAAGCAAAGTTTCTGCAGATGCT CTGGACGCTGAGCTGCTCAGCATGACGACGGTGATGCCGGAGGAGGAGCCGAAGGCAGAG GGCCTGATGATGGAAACAGACCTAACTGCTTCAGATCTCCTGAAGACCTCCGACCCGGAG GCGCAGCCCGGCATGCCTGACGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGTAAGCGAAACTCCTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTATAC AACTTTTGCAACTCCAGTTGTGTGGCTAAATTTCAGGCTCTCAGTGTGCAGTCATCTCCA AACGGCCAATTTGTAGCTCCAAGCGACATTCAGTTGAAGTGCAACTATTGCAAAAACTCG TTTTGTTCAAAGCCAGAAGTCCTGGAATGGGAGAACAAAGTGCATCAGTTCTGCAGCAAA ACTTGTTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGTCAA GAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGT GAAGGCTGCAAACTGTTGTACAAGCAGGATTTTGCCAGGCGTTTGGGACTGCGATGTGTG ACCTGCAACTATTGCTCTCAGCTGTGTAAGAAGGGGGCGGCCAAGGAGCTGGACGGCGTG GTGCGGGACTTCTGCAGTGAGGACTGCTGCCGCCGGTTCCAGGACTGGTACTACAAGGCT GCGAGGTGTGACTGCTGTAAATCGCAGGGCACACTCAGGGAGCGCGTGCAGTGGCGGGGA GAGATGAAGCATTTCTGTGACCAGCACTGCTTGTTACGCTTCTATTGTCAGCAAAACGAG CCCAACATGACCACGCAGAAAGGACCTGAAAACCTGCATTACGATCAGGGCTGTCAGACA TCCCGAACCAAAACGACAGGCTCCGCGCCGCCCCCCTCTCCGACCCCCGGCAAAGAGATG AAGAACAAAGCAGTTCTGTGCAAACCGCTGACGATGACGAAGGCGACGTACTGCAAACCT CACATGCAGAGCAAGTCTTGTCAGACAGATGAAGGCTGGAGGCCGGAGCGGGTCCCGGTG CCCATCCCCGTGCCCGTGTACATCCCGGTGCCCATGCACATGTACAGCCAGAGCGTCCCC GTGCCCACCACCGTCCCCGTGCCTGTGCCAGTTCCTGTTTTCCTGCCGGCCCCCTTGGAC AGCAGCGAGAGGATCCCTGCCGTGGTGGAGGAGCTGAAAAGCAAAGTTTCTGCAGATGCT CTGGACGCTGAGCTGCTCAGCATGACGACGGTGATGCCGGAGGAGGAGCCGAAGGCAGAG GGCCTGATGATGGAAACAGACCTAACTGCTTCAGATCTCCTGAAGACCTCCGACCCGGAG GCGCAGCCCGGCATGCCTGACGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 212-330, no strand, RNAz p=0.631066 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 212-330, no strand, RNAz p=0.631066 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 212-366, gnl|bosTau2|chr12 (20681734-20681888) | |
| 212-366, gnl|canFam2|chr25 (21080562-21080392) | |
| 212-366, gnl|danRer3|chrUn (117016572-117016734) | |
| 212-366, gnl|dasNov1|scaffold_4289 (56953-57123) | |
| 212-366, gnl|echTel1|scaffold_294830 (47813-47643) | |
| 212-366, gnl|fr1|chrUn (272278586-272278428) | |
| 212-366, gnl|galGal2|chr1 (171028581-171028414) | |
| 212-366, gnl|hg17|chr13 (19506379-19506549) | |
| 212-366, gnl|Hg17|chr13 (19506392-19506546) | |
| 212-366, gnl|loxAfr1|scaffold_19170 (14066-14222) | |
| 212-366, gnl|mm7|chr14 (51795891-51796061) | |
| 212-366, gnl|Mm7|chr14 (51795904-51796058) | |
| 212-366, gnl|monDom2|scaffold_15 (27656728-27656894) | |
| 212-366, gnl|oryCun1|scaffold_215146 (48036-47880) | |
| 212-366, gnl|panTro1|chr14 (18391566-18391736) | |
| 212-366, gnl|rheMac2|chr17 (1467515-1467345) | |
| 212-366, gnl|rn3|chr15 (35964375-35964545) | |
| 212-366, gnl|tetNig1|chr2 (17726147-17725980) | |
| 212-366, gnl|xenTro1|scaffold_327 (850900-851061) | |
| 535-710, gnl|bosTau2|chr12 (20690664-20690839) | |
| 535-710, gnl|canFam2|chr25 (21070882-21070700) | |
| 535-710, gnl|danRer3|chrUn (117019856-117020033) | |
| 535-710, gnl|dasNov1|scaffold_4289 (67617-67795) | |
| 535-710, gnl|echTel1|scaffold_294830 (40464-40282) | |
| 535-710, gnl|fr1|chrUn (272278081-272277898) | |
| 535-710, gnl|galGal2|chr1 (171010430-171010226) | |
| 535-710, gnl|hg17|chr13 (19523550-19523730) | |
| 535-710, gnl|Hg17|chr13 (19523570-19523745) | |
| 535-710, gnl|loxAfr1|scaffold_13262 (6207-6390) | |
| 535-710, gnl|mm7|chr14 (51805205-51805386) | |
| 535-710, gnl|Mm7|chr14 (51805226-51805399) | |
| 535-710, gnl|monDom2|scaffold_15 (27664315-27664494) | |
| 535-710, gnl|oryCun1|scaffold_139783 (14826-14653) | |
| 535-710, gnl|panTro1|chr14 (18410472-18410652) | |
| 535-710, gnl|rheMac2|chr17 (1450111-1449931) | |
| 535-710, gnl|rn3|chrX (89559240-89559082) | |
| 535-710, gnl|tetNig1|chr2 (17725612-17725454) | |
| 535-710, gnl|xenTro1|scaffold_327 (852524-852703) | |
| 739-872, gnl|bosTau2|chr12 (20694455-20694588) | |
| 739-872, gnl|Hg17|chr13 (19530715-19530848) | |
| 739-872, gnl|Mm7|chr14 (51809717-51809850) | |
| 985-1143, gnl|bosTau2|chr12 (20696200-20696352) | |
| 985-1143, gnl|Hg17|chr13 (19533193-19533351) | |
| 985-1143, gnl|Mm7|chr14 (51811785-51811943) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-366, gnl|bosTau2|chr12 (20681734-20681888) | |
| 212-366, gnl|canFam2|chr25 (21080562-21080392) | |
| 212-366, gnl|danRer3|chrUn (117016572-117016734) | |
| 212-366, gnl|dasNov1|scaffold_4289 (56953-57123) | |
| 212-366, gnl|echTel1|scaffold_294830 (47813-47643) | |
| 212-366, gnl|fr1|chrUn (272278586-272278428) | |
| 212-366, gnl|galGal2|chr1 (171028581-171028414) | |
| 212-366, gnl|hg17|chr13 (19506379-19506549) | |
| 212-366, gnl|Hg17|chr13 (19506392-19506546) | |
| 212-366, gnl|loxAfr1|scaffold_19170 (14066-14222) | |
| 212-366, gnl|mm7|chr14 (51795891-51796061) | |
| 212-366, gnl|Mm7|chr14 (51795904-51796058) | |
| 212-366, gnl|monDom2|scaffold_15 (27656728-27656894) | |
| 212-366, gnl|oryCun1|scaffold_215146 (48036-47880) | |
| 212-366, gnl|panTro1|chr14 (18391566-18391736) | |
| 212-366, gnl|rheMac2|chr17 (1467515-1467345) | |
| 212-366, gnl|rn3|chr15 (35964375-35964545) | |
| 212-366, gnl|tetNig1|chr2 (17726147-17725980) | |
| 212-366, gnl|xenTro1|scaffold_327 (850900-851061) | |
| 535-710, gnl|bosTau2|chr12 (20690664-20690839) | |
| 535-710, gnl|canFam2|chr25 (21070882-21070700) | |
| 535-710, gnl|danRer3|chrUn (117019856-117020033) | |
| 535-710, gnl|dasNov1|scaffold_4289 (67617-67795) | |
| 535-710, gnl|echTel1|scaffold_294830 (40464-40282) | |
| 535-710, gnl|fr1|chrUn (272278081-272277898) | |
| 535-710, gnl|galGal2|chr1 (171010430-171010226) | |
| 535-710, gnl|hg17|chr13 (19523550-19523730) | |
| 535-710, gnl|Hg17|chr13 (19523570-19523745) | |
| 535-710, gnl|loxAfr1|scaffold_13262 (6207-6390) | |
| 535-710, gnl|mm7|chr14 (51805205-51805386) | |
| 535-710, gnl|Mm7|chr14 (51805226-51805399) | |
| 535-710, gnl|monDom2|scaffold_15 (27664315-27664494) | |
| 535-710, gnl|oryCun1|scaffold_139783 (14826-14653) | |
| 535-710, gnl|panTro1|chr14 (18410472-18410652) | |
| 535-710, gnl|rheMac2|chr17 (1450111-1449931) | |
| 535-710, gnl|rn3|chrX (89559240-89559082) | |
| 535-710, gnl|tetNig1|chr2 (17725612-17725454) | |
| 535-710, gnl|xenTro1|scaffold_327 (852524-852703) | |
| 739-872, gnl|bosTau2|chr12 (20694455-20694588) | |
| 739-872, gnl|Hg17|chr13 (19530715-19530848) | |
| 739-872, gnl|Mm7|chr14 (51809717-51809850) | |
| 985-1143, gnl|bosTau2|chr12 (20696200-20696352) | |
| 985-1143, gnl|Hg17|chr13 (19533193-19533351) | |
| 985-1143, gnl|Mm7|chr14 (51811785-51811943) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| cje (0.165235) |