Non-Coding RNA Search

Ss1.1-Pig4-TMW8050N15.3

Sequence:


               
               GTGGCCGGAGGGCCGCAGGTTGTGGGGAGCGGTGTGTGTGCTGCCTCGCACTCTAACGTC
TCCGCCGGATTTCCTCCGCACCTGCAGGCCGGCGCGATGCGGCGCCGCTTCTGGGGAGTA
TTCAACTGCCTGTGCGCTGGAGCGTTCGGGGCTCTGGCCGCCGCCTCTGCCAAGCTGGCC
TTCGGCAGCGAGGTGAACGTGGCTTTCTGCATCTTAGGCATTATTATGATGGCTACCACC
AATTCTCTGATGTGGACATTCTTTAGCCGGGGCCTCAGTTTCTCCATGTCTTCAGCCATT
GCATCTGTCACGGTGACGTTTTCAAATATCCTCAGCTCGGCCTTCCTGGGTTTTGTGTTG
TACGGAGAGTGCCAGCAGGTCTTGTGGTGGGGAGGAGTGTTCCTCATCCTCTGCGGACTC
ACCCTCATCCACAGGGAGCTCCCACCAACCAGCAAAGCCCTTCCGCACAAGCAGCAGTAG
CACCAGCGGGCTGGACAGAGCTGCTGGAAAGACAGTGGTGGCGACTCAGGCTTGGGTTGG
CGTGTGGGGACAGCTGAGGGCGATCTGGGTGCACAGCCTTCCAACCCTTGGCCAAAGGGA
GAGGCTTCCCGGGAGACAGACTTGTGTTGGAGCAGCCTTCCAGTGGGCAGCTCCAGCTTC
TGTGAGGGGGAGTTCACCGCAGCGATGTCCTGCCCTGAAGCCTTCTCCATACACCTGCTC
GGTGCTATTGACTCACCTTTCCCAGCCACCCAGTGCGCCCTGGCAGATGTGGGAGCCCCT
GGGGTGAGCCAGCTTCCTCTTTGGACTTGAAATCCTGCCGTAACTGCAGTCCTGCTGCCC
GACAAAGACCAGTCACGGAATTTTGGGATTGGTGACTGGTGGGGCTTTTGACAACTTAAT
ACAGATTTATCAGGCCATCTGGGTCAGGCTTCTATATTACAGCAAAAGAAGGAAAACCAG
ATTAATAAATACTTTTTTTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCCGGAGGGCCGCAGGTTGTGGGGAGCGGTGTGTGTGCTGCCTCGCACTCTAACGTC
TCCGCCGGATTTCCTCCGCACCTGCAGGCCGGCGCGATGCGGCGCCGCTTCTGGGGAGTA
TTCAACTGCCTGTGCGCTGGAGCGTTCGGGGCTCTGGCCGCCGCCTCTGCCAAGCTGGCC
TTCGGCAGCGAGGTGAACGTGGCTTTCTGCATCTTAGGCATTATTATGATGGCTACCACC
AATTCTCTGATGTGGACATTCTTTAGCCGGGGCCTCAGTTTCTCCATGTCTTCAGCCATT
GCATCTGTCACGGTGACGTTTTCAAATATCCTCAGCTCGGCCTTCCTGGGTTTTGTGTTG
TACGGAGAGTGCCAGCAGGTCTTGTGGTGGGGAGGAGTGTTCCTCATCCTCTGCGGACTC
ACCCTCATCCACAGGGAGCTCCCACCAACCAGCAAAGCCCTTCCGCACAAGCAGCAGTAG
CACCAGCGGGCTGGACAGAGCTGCTGGAAAGACAGTGGTGGCGACTCAGGCTTGGGTTGG
CGTGTGGGGACAGCTGAGGGCGATCTGGGTGCACAGCCTTCCAACCCTTGGCCAAAGGGA
GAGGCTTCCCGGGAGACAGACTTGTGTTGGAGCAGCCTTCCAGTGGGCAGCTCCAGCTTC
TGTGAGGGGGAGTTCACCGCAGCGATGTCCTGCCCTGAAGCCTTCTCCATACACCTGCTC
GGTGCTATTGACTCACCTTTCCCAGCCACCCAGTGCGCCCTGGCAGATGTGGGAGCCCCT
GGGGTGAGCCAGCTTCCTCTTTGGACTTGAAATCCTGCCGTAACTGCAGTCCTGCTGCCC
GACAAAGACCAGTCACGGAATTTTGGGATTGGTGACTGGTGGGGCTTTTGACAACTTAAT
ACAGATTTATCAGGCCATCTGGGTCAGGCTTCTATATTACAGCAAAAGAAGGAAAACCAG
ATTAATAAATACTTTTTTTTTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18043751|gb|AAH19851.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18043751|gb|AAH19851.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               835-952, - strand, RNAz p=0.670851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               835-952, - strand, RNAz p=0.670851

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               191-340, gnl|bosTau2|chr9 (21446636-21446785)
               

               
               191-340, gnl|Hg17|chr3 (44880691-44880840)
               

               
               191-340, gnl|Mm7|chr9 (122727562-122727711)
               


               
               449-980, gnl|bosTau2|chr9 (21447460-21447998)
               

               
               449-980, gnl|canFam2|chr20 (46448622-46448001)
               

               
               449-980, gnl|echTel1|scaffold_309309 (47841-48410)
               

               
               449-980, gnl|hg17|chr3 (44881646-44882257)
               

               
               449-980, gnl|Hg17|chr3 (44881645-44882149)
               

               
               449-980, gnl|loxAfr1|scaffold_16220 (38540-39157)
               

               
               449-980, gnl|mm7|chr9 (122728347-122728982)
               

               
               449-980, gnl|oryCun1|scaffold_183020 (75806-76381)
               

               
               449-980, gnl|panTro1|chr2 (46200151-46200765)
               

               
               449-980, gnl|rheMac2|chr2 (91672107-91671480)
               

               
               449-980, gnl|rn3|chr8 (127788777-127789381)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-340, gnl|bosTau2|chr9 (21446636-21446785)
               

               
               191-340, gnl|Hg17|chr3 (44880691-44880840)
               

               
               191-340, gnl|Mm7|chr9 (122727562-122727711)
               


               
               449-980, gnl|bosTau2|chr9 (21447460-21447998)
               

               
               449-980, gnl|canFam2|chr20 (46448622-46448001)
               

               
               449-980, gnl|echTel1|scaffold_309309 (47841-48410)
               

               
               449-980, gnl|hg17|chr3 (44881646-44882257)
               

               
               449-980, gnl|Hg17|chr3 (44881645-44882149)
               

               
               449-980, gnl|loxAfr1|scaffold_16220 (38540-39157)
               

               
               449-980, gnl|mm7|chr9 (122728347-122728982)
               

               
               449-980, gnl|oryCun1|scaffold_183020 (75806-76381)
               

               
               449-980, gnl|panTro1|chr2 (46200151-46200765)
               

               
               449-980, gnl|rheMac2|chr2 (91672107-91671480)
               

               
               449-980, gnl|rn3|chr8 (127788777-127789381)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eje (0.197668)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.197668)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	191-340, gnl\|bosTau2\|chr9 (21446636-21446785)
	191-340, gnl\|Hg17\|chr3 (44880691-44880840)
	191-340, gnl\|Mm7\|chr9 (122727562-122727711)

	449-980, gnl\|bosTau2\|chr9 (21447460-21447998)
	449-980, gnl\|canFam2\|chr20 (46448622-46448001)
	449-980, gnl\|echTel1\|scaffold_309309 (47841-48410)
	449-980, gnl\|hg17\|chr3 (44881646-44882257)
	449-980, gnl\|Hg17\|chr3 (44881645-44882149)
	449-980, gnl\|loxAfr1\|scaffold_16220 (38540-39157)
	449-980, gnl\|mm7\|chr9 (122728347-122728982)
	449-980, gnl\|oryCun1\|scaffold_183020 (75806-76381)
	449-980, gnl\|panTro1\|chr2 (46200151-46200765)
	449-980, gnl\|rheMac2\|chr2 (91672107-91671480)
	449-980, gnl\|rn3\|chr8 (127788777-127789381)

	eje (0.197668)
	mcp (0.170648)
	nje (0.16592)
	nco (0.161734)
	eep (0.122564)
	cly (0.120642)
	jej (0.0989218)