Non-Coding RNA Search

Ss1.1-Pig4-TMW8050N16.5

Sequence:


               
               GCTCAGCCGCCTGCTGAACATGGCCGACGTGGCCGTGTATGGTGTGGAGGTGCCAGGAAC
CGAGGGTCGGGCTGGCATGGCCGCTGTGGCCAACCCCACTGGCAGCTGCGACCTGGAGCG
CCTTGCCCAGCTCCTGGAGAAGGAGCTGCCCCTGTACGCGCGCCCCATCTTCCTGCGCCT
TCTGCCTGAGCTGCATAAAACAGGGACTTTCAAGCTACAGAAGACAGACCTGCGGAAAGA
GGGCTTTGACCCAGCAGTCGTGAAAGACCCGCTGTTCTACCTGGATGCCCGGAAGGGCCG
CTATGTCCCGCTGGACCGAGAGGCCTACACCCTTATCCAGGCCGGTGAGGTGAAGCTGTG
ATTTGCCCCAAGTCCCTCTGAGGCCAACAGATGCTGGATCCAGAGCCCCAGCTCCCAGCC
CAGAGGGTCCTGGGCGAAGCCAGACCAAAGCAAGCAGGGCCCGGCACTGTGACCCCGAGG
TGCCGACCCCCGCACCCAAACTGCCAAAAGCCTCAGTGCCACCTCCCCCTTTCCCCGGGG
CTTTCTGTGAAAGCCTCATGTCCACGTTCTGTCTTGGAGGCCATGCAGAGCCTCTGGCCC
CAGGCTGAGACTGAGACCGGGCCCCTCAGGGTGATGTCTTGGGTCAGAGCAGAGGGGAGC
AGAGAGTCACCAAGCACTCCACGGAGAACAGGCAGCTTGTAAATGGGACCAGGGCGGAAG
CCCCCAGACTCAGGAAGCCAGTGGAGTGGGCAGGGGCAGTGGTGGCCACCGAGCGGGTGT
CTAAAGGGGATCCAGGCCCTGGAGCTGATCGAGTGTCACTCAGCCCTGCCTGTCCCTCCC
TGAGAGCAGGAGGAGCACTGGAGCTGCAGCCGGAGGCCTGGCAGGAGCACCCCTCATCCC
CTCCCCTCCCCTCCCCTCTCAGGTGGCTGCCTGGCTGCCCCTCGGGCAGGGCTGTTCTGT
CTTTGTGGGTTTGTCCCGGTCACCTGCTCTATCTCCCCCAGCTATGAGAGGAGAAGGGGT
AGGGGGCGCTCAGGAGCCAATAAATTCTGCCTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGCCGCCTGCTGAACATGGCCGACGTGGCCGTGTATGGTGTGGAGGTGCCAGGAAC
CGAGGGTCGGGCTGGCATGGCCGCTGTGGCCAACCCCACTGGCAGCTGCGACCTGGAGCG
CCTTGCCCAGCTCCTGGAGAAGGAGCTGCCCCTGTACGCGCGCCCCATCTTCCTGCGCCT
TCTGCCTGAGCTGCATAAAACAGGGACTTTCAAGCTACAGAAGACAGACCTGCGGAAAGA
GGGCTTTGACCCAGCAGTCGTGAAAGACCCGCTGTTCTACCTGGATGCCCGGAAGGGCCG
CTATGTCCCGCTGGACCGAGAGGCCTACACCCTTATCCAGGCCGGTGAGGTGAAGCTGTG
ATTTGCCCCAAGTCCCTCTGAGGCCAACAGATGCTGGATCCAGAGCCCCAGCTCCCAGCC
CAGAGGGTCCTGGGCGAAGCCAGACCAAAGCAAGCAGGGCCCGGCACTGTGACCCCGAGG
TGCCGACCCCCGCACCCAAACTGCCAAAAGCCTCAGTGCCACCTCCCCCTTTCCCCGGGG
CTTTCTGTGAAAGCCTCATGTCCACGTTCTGTCTTGGAGGCCATGCAGAGCCTCTGGCCC
CAGGCTGAGACTGAGACCGGGCCCCTCAGGGTGATGTCTTGGGTCAGAGCAGAGGGGAGC
AGAGAGTCACCAAGCACTCCACGGAGAACAGGCAGCTTGTAAATGGGACCAGGGCGGAAG
CCCCCAGACTCAGGAAGCCAGTGGAGTGGGCAGGGGCAGTGGTGGCCACCGAGCGGGTGT
CTAAAGGGGATCCAGGCCCTGGAGCTGATCGAGTGTCACTCAGCCCTGCCTGTCCCTCCC
TGAGAGCAGGAGGAGCACTGGAGCTGCAGCCGGAGGCCTGGCAGGAGCACCCCTCATCCC
CTCCCCTCCCCTCCCCTCTCAGGTGGCTGCCTGGCTGCCCCTCGGGCAGGGCTGTTCTGT
CTTTGTGGGTTTGTCCCGGTCACCTGCTCTATCTCCCCCAGCTATGAGAGGAGAAGGGGT
AGGGGGCGCTCAGGAGCCAATAAATTCTGCCTTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60688260|gb|AAH91430.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60688260|gb|AAH91430.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               390-504, - strand, RNAz p=0.794063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-504, - strand, RNAz p=0.794063

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               53-204, gnl|bosTau2|chr11 (78248777-78248928)
               

               
               53-204, gnl|canFam2|chr9 (58511739-58511614)
               

               
               53-204, gnl|danRer3|chr10 (2355112-2355220)
               

               
               53-204, gnl|dasNov1|scaffold_260079 (127-4)
               

               
               53-204, gnl|echTel1|scaffold_296783 (3381-3255)
               

               
               53-204, gnl|fr1|chrUn (38739060-38739183)
               

               
               53-204, gnl|galGal2|chr17 (5769440-5769553)
               

               
               53-204, gnl|hg17|chr9 (128197460-128197586)
               

               
               53-204, gnl|Hg17|chr9 (128197479-128197630)
               

               
               53-204, gnl|mm7|chr2 (29820076-29820202)
               

               
               53-204, gnl|Mm7|chr2 (29820095-29820246)
               

               
               53-204, gnl|monDom2|scaffold_51 (2877716-2877842)
               

               
               53-204, gnl|oryCun1|scaffold_171169 (4500-4374)
               

               
               53-204, gnl|panTro1|chr11 (113007220-113007346)
               

               
               53-204, gnl|rheMac2|chr15 (10517814-10517688)
               

               
               53-204, gnl|rn3|chr3 (8799716-8799841)
               

               
               53-204, gnl|tetNig1|chr3 (11153863-11153969)
               

               
               53-204, gnl|xenTro1|scaffold_6044 (2255-2381)
               


               
               390-830, gnl|bosTau2|chr11 (78252353-78252795)
               

               
               390-830, gnl|Hg17|chr9 (128202352-128202790)
               

               
               390-830, gnl|Mm7|chr2 (29823075-29823510)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-204, gnl|bosTau2|chr11 (78248777-78248928)
               

               
               53-204, gnl|canFam2|chr9 (58511739-58511614)
               

               
               53-204, gnl|danRer3|chr10 (2355112-2355220)
               

               
               53-204, gnl|dasNov1|scaffold_260079 (127-4)
               

               
               53-204, gnl|echTel1|scaffold_296783 (3381-3255)
               

               
               53-204, gnl|fr1|chrUn (38739060-38739183)
               

               
               53-204, gnl|galGal2|chr17 (5769440-5769553)
               

               
               53-204, gnl|hg17|chr9 (128197460-128197586)
               

               
               53-204, gnl|Hg17|chr9 (128197479-128197630)
               

               
               53-204, gnl|mm7|chr2 (29820076-29820202)
               

               
               53-204, gnl|Mm7|chr2 (29820095-29820246)
               

               
               53-204, gnl|monDom2|scaffold_51 (2877716-2877842)
               

               
               53-204, gnl|oryCun1|scaffold_171169 (4500-4374)
               

               
               53-204, gnl|panTro1|chr11 (113007220-113007346)
               

               
               53-204, gnl|rheMac2|chr15 (10517814-10517688)
               

               
               53-204, gnl|rn3|chr3 (8799716-8799841)
               

               
               53-204, gnl|tetNig1|chr3 (11153863-11153969)
               

               
               53-204, gnl|xenTro1|scaffold_6044 (2255-2381)
               


               
               390-830, gnl|bosTau2|chr11 (78252353-78252795)
               

               
               390-830, gnl|Hg17|chr9 (128202352-128202790)
               

               
               390-830, gnl|Mm7|chr2 (29823075-29823510)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jej (0.692452)
               

               
               nep (0.183925)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.692452)
               

               
               nep (0.183925)
               

               
               eje (0.0988338)

	53-204, gnl\|bosTau2\|chr11 (78248777-78248928)
	53-204, gnl\|canFam2\|chr9 (58511739-58511614)
	53-204, gnl\|danRer3\|chr10 (2355112-2355220)
	53-204, gnl\|dasNov1\|scaffold_260079 (127-4)
	53-204, gnl\|echTel1\|scaffold_296783 (3381-3255)
	53-204, gnl\|fr1\|chrUn (38739060-38739183)
	53-204, gnl\|galGal2\|chr17 (5769440-5769553)
	53-204, gnl\|hg17\|chr9 (128197460-128197586)
	53-204, gnl\|Hg17\|chr9 (128197479-128197630)
	53-204, gnl\|mm7\|chr2 (29820076-29820202)
	53-204, gnl\|Mm7\|chr2 (29820095-29820246)
	53-204, gnl\|monDom2\|scaffold_51 (2877716-2877842)
	53-204, gnl\|oryCun1\|scaffold_171169 (4500-4374)
	53-204, gnl\|panTro1\|chr11 (113007220-113007346)
	53-204, gnl\|rheMac2\|chr15 (10517814-10517688)
	53-204, gnl\|rn3\|chr3 (8799716-8799841)
	53-204, gnl\|tetNig1\|chr3 (11153863-11153969)
	53-204, gnl\|xenTro1\|scaffold_6044 (2255-2381)

	390-830, gnl\|bosTau2\|chr11 (78252353-78252795)
	390-830, gnl\|Hg17\|chr9 (128202352-128202790)
	390-830, gnl\|Mm7\|chr2 (29823075-29823510)