Non-Coding RNA Search

Ss1.1-Pig4-TMW8050O11.5

Sequence:


               
               TCTCTCGTAGGAAGTGAATCCGACAGGAAGGTGATGAATCCGAGGTGAGCCTCCCAGACT
TCCGCGTGGGGCGTGGCCTTGAGGTACCTTGAGCTGGGGCACCGCACCTTTTTCAGGGGT
TTACATCACCCTCTTACTCAGCGATGAACTGCTTTTGTTTCTTTCCACCTGGCGACCCCA
AGTTCTCCAGGCTCTCTAGAGGGGAGCCGGGGTTCGGGCGTGGGCGCGCCCCGGAGTGGG
AGTGATGGGTACACCCTGAGGGCAGGGGAAGTTGCAGGACCTTAATCATCTGGCCAGTCT
CCGGCGGGCCTGGGGAATCCGGGAACTGGAGGCAGTGTAAGGGGGTAGGGAGGGGTGGGG
TGGCATGAGAAGTTGCAAGAGGCGAGCGGGGCTCTGCATCCGCCCTCTGGCCGAGCGACA
ATGGGGTGACCACCCTTTGCCCGAGAAGTCTGCAAGCGCGCCCCCTCCCCGGGCGGCGGG
ACCTGGAAGGCCGGGGCTGGGCGTGCCGCCGCCTGCCCGCCGCGCTGGCCGGTTGTGCCC
TGGGGGCCGCGCGGGGTGGAGACGGGGCGGCGGGGGCGGGCGCCAGTCTCTGCTGCAGGT
CCGCGCTCAGCCCTCGCCTGCCGAGCCTCGCGGAGGAGACGTCTCACCGCGCGCCGCCTG
CTCCGCCTGGGTGGCCTCTGCCCAGGTCTCCAGGGACTCAGCGCTGCACGTGCCCGGCGG
CGAGGCTGCAAGACGCAGGCTCGGGAAAGAAGGGTCTCCGTGGCGAGCCCCCATCTCCTC
CTGGTCTGTCCGCCTCTCCACGTGCAGACCCTTGCATTTGCTACGATGCTCTCATCCAGT
GACTTTGCATCTGCTTCTTGGGAGCTCGTGGTCCGAGTTGAACGTCCAAATGAAGAGGAG
AAGGAAGTGACGCTGAGAGTGTCTGGAGACCTGCACATTGGAGGAGTGATGCTCAAGCTA
GTGGAACAGATCAACATATCCCAGGACTGGTCAGACTTTGCCCTTTGGTGGGAACAGAAG
CACTGCTGGCTTCTGAAGACACACTGGACCCTGGACAAGTGTGGGGTCCAGGCAGATGCA
AAGCTCCTCTTCACTCCTCAGCATAAAATGCTTCGCCTCCGCCTGCCCAACCTGAAGACG
GTGCGACTTCGAGTCAGCTTCTCAGCTGTGGTCTTCCGAGCTGTCGGCGACATCTGCAGA
GCCCTGAATATTAGAAGAGCAGAAGAACTTTCCTTGTTAAAGCCTTCTGATGAATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCGTAGGAAGTGAATCCGACAGGAAGGTGATGAATCCGAGGTGAGCCTCCCAGACT
TCCGCGTGGGGCGTGGCCTTGAGGTACCTTGAGCTGGGGCACCGCACCTTTTTCAGGGGT
TTACATCACCCTCTTACTCAGCGATGAACTGCTTTTGTTTCTTTCCACCTGGCGACCCCA
AGTTCTCCAGGCTCTCTAGAGGGGAGCCGGGGTTCGGGCGTGGGCGCGCCCCGGAGTGGG
AGTGATGGGTACACCCTGAGGGCAGGGGAAGTTGCAGGACCTTAATCATCTGGCCAGTCT
CCGGCGGGCCTGGGGAATCCGGGAACTGGAGGCAGTGTAAGGGGGTAGGGAGGGGTGGGG
TGGCATGAGAAGTTGCAAGAGGCGAGCGGGGCTCTGCATCCGCCCTCTGGCCGAGCGACA
ATGGGGTGACCACCCTTTGCCCGAGAAGTCTGCAAGCGCGCCCCCTCCCCGGGCGGCGGG
ACCTGGAAGGCCGGGGCTGGGCGTGCCGCCGCCTGCCCGCCGCGCTGGCCGGTTGTGCCC
TGGGGGCCGCGCGGGGTGGAGACGGGGCGGCGGGGGCGGGCGCCAGTCTCTGCTGCAGGT
CCGCGCTCAGCCCTCGCCTGCCGAGCCTCGCGGAGGAGACGTCTCACCGCGCGCCGCCTG
CTCCGCCTGGGTGGCCTCTGCCCAGGTCTCCAGGGACTCAGCGCTGCACGTGCCCGGCGG
CGAGGCTGCAAGACGCAGGCTCGGGAAAGAAGGGTCTCCGTGGCGAGCCCCCATCTCCTC
CTGGTCTGTCCGCCTCTCCACGTGCAGACCCTTGCATTTGCTACGATGCTCTCATCCAGT
GACTTTGCATCTGCTTCTTGGGAGCTCGTGGTCCGAGTTGAACGTCCAAATGAAGAGGAG
AAGGAAGTGACGCTGAGAGTGTCTGGAGACCTGCACATTGGAGGAGTGATGCTCAAGCTA
GTGGAACAGATCAACATATCCCAGGACTGGTCAGACTTTGCCCTTTGGTGGGAACAGAAG
CACTGCTGGCTTCTGAAGACACACTGGACCCTGGACAAGTGTGGGGTCCAGGCAGATGCA
AAGCTCCTCTTCACTCCTCAGCATAAAATGCTTCGCCTCCGCCTGCCCAACCTGAAGACG
GTGCGACTTCGAGTCAGCTTCTCAGCTGTGGTCTTCCGAGCTGTCGGCGACATCTGCAGA
GCCCTGAATATTAGAAGAGCAGAAGAACTTTCCTTGTTAAAGCCTTCTGATGAATATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57208537|emb|CAI42167.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57208537|emb|CAI42167.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               780-889, + strand, RNAz p=0.956797
               

               
               974-1132, - strand, RNAz p=0.889075

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               780-889, + strand, RNAz p=0.956797
               

               
               974-1132, - strand, RNAz p=0.889075

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB105105, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB105105, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               220-749, gnl|bosTau2|chr13 (32760879-32761414)
               

               
               220-749, gnl|Hg17|chr20 (6052024-6051424)
               


               
               751-971, gnl|bosTau2|chr13 (32782173-32782396)
               

               
               751-971, gnl|Hg17|chr20 (6048284-6048053)
               

               
               751-971, gnl|Mm7|chr2 (132683195-132682792)
               


               
               974-1207, gnl|bosTau2|chr13 (32784661-32784894)
               

               
               974-1207, gnl|Hg17|chr20 (6044691-6044458)
               

               
               974-1207, gnl|Mm7|chr2 (132680368-132680135)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-749, gnl|bosTau2|chr13 (32760879-32761414)
               

               
               220-749, gnl|Hg17|chr20 (6052024-6051424)
               


               
               751-971, gnl|bosTau2|chr13 (32782173-32782396)
               

               
               751-971, gnl|Hg17|chr20 (6048284-6048053)
               

               
               751-971, gnl|Mm7|chr2 (132683195-132682792)
               


               
               974-1207, gnl|bosTau2|chr13 (32784661-32784894)
               

               
               974-1207, gnl|Hg17|chr20 (6044691-6044458)
               

               
               974-1207, gnl|Mm7|chr2 (132680368-132680135)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	780-889, + strand, RNAz p=0.956797
	974-1132, - strand, RNAz p=0.889075

	220-749, gnl\|bosTau2\|chr13 (32760879-32761414)
	220-749, gnl\|Hg17\|chr20 (6052024-6051424)

	751-971, gnl\|bosTau2\|chr13 (32782173-32782396)
	751-971, gnl\|Hg17\|chr20 (6048284-6048053)
	751-971, gnl\|Mm7\|chr2 (132683195-132682792)

	974-1207, gnl\|bosTau2\|chr13 (32784661-32784894)
	974-1207, gnl\|Hg17\|chr20 (6044691-6044458)
	974-1207, gnl\|Mm7\|chr2 (132680368-132680135)