Non-Coding RNA Search

Ss1.1-Pig4-TMW8050O17.3

Sequence:


               
               CTTTTAAAGAGCTTCAACTCCAGCTCCTTTCCTGCTTCCTCCGTAAGCAAAGCATGTTTG
TGTGTTCGATTCTTTACAGGAAATGTGACTGGATGCCTGTGCTGCTCTCAGTCCTTAGCT
GGTTTTCTAGTTCAGTGTCCAGCACAACTCAATCAGAATGTATTCACCGTTTCCCTTAAG
TATGCCAGGTACCTCAGGTGAGAGGTCACAAGTTCAGGAAGAAAGGCTTGACTCAAACCA
GCCATCTTGCTGGACGTCGAAGTCTTTCAAAACCAAACTCCTGAGCCACAGGGGCCTGGT
TCCTCCCGCGTCGTGCCCAGCTCAGCTGTGCTTTTCTGTCTGTGCCACTTGGAACAGGGA
GCTCTTGCCTCTGTTCCTGTCTCCTTTCTAGCCTCTCCTGCGAATCAGCTGTGTCAGCGT
TGGCAGGCACCTCTCTTCCTCCACCCCGACATGCCGTGTTCTAAGAATTTTGGCATCACT
TCTGAGCAAATGTCGTATGGATAGCACTGTGGAACTCATGTCTAGAAAACTGGCTTTTAA
CGACGTTTATCAAATTGTGTTGTGACTTTTCTGACATTAAAGCAAAAACTTGTCAATTGG
TAATAATGACTTTTTAAATAAAATGTTCGAGACTGTTTTAGCCTTTTATCGGCATTTCAT
TTGGAAAATATCAGTCTTTCTACAGATTTGTATCTTATTTTCCTCTGATAACCCAAATCA
TTTCTTAGCCCTTTCGTTTCATTGCACTGTTAATATTCAGTTATATTTTACTATATAGTA
GAGTGGGCATATTTTATGATCTAAAATAAAATATTTAACTTTCTTTCTGTGACTGATATC
CTTTTCTGCTTGTTCAGATTGAATTTGAAAAGCCAGAACAACTTCTGCCTACACTATATT
TCAACTGTTATTCCCTCCAATTGTACATGATAACACTCTTGTATTATTTTAAAAATCAAA
TACCTAAACATTTGGATCTGAAAGTGATTATTTGATTTACAAAATAAATTTTTACTATTC
AGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTAAAGAGCTTCAACTCCAGCTCCTTTCCTGCTTCCTCCGTAAGCAAAGCATGTTTG
TGTGTTCGATTCTTTACAGGAAATGTGACTGGATGCCTGTGCTGCTCTCAGTCCTTAGCT
GGTTTTCTAGTTCAGTGTCCAGCACAACTCAATCAGAATGTATTCACCGTTTCCCTTAAG
TATGCCAGGTACCTCAGGTGAGAGGTCACAAGTTCAGGAAGAAAGGCTTGACTCAAACCA
GCCATCTTGCTGGACGTCGAAGTCTTTCAAAACCAAACTCCTGAGCCACAGGGGCCTGGT
TCCTCCCGCGTCGTGCCCAGCTCAGCTGTGCTTTTCTGTCTGTGCCACTTGGAACAGGGA
GCTCTTGCCTCTGTTCCTGTCTCCTTTCTAGCCTCTCCTGCGAATCAGCTGTGTCAGCGT
TGGCAGGCACCTCTCTTCCTCCACCCCGACATGCCGTGTTCTAAGAATTTTGGCATCACT
TCTGAGCAAATGTCGTATGGATAGCACTGTGGAACTCATGTCTAGAAAACTGGCTTTTAA
CGACGTTTATCAAATTGTGTTGTGACTTTTCTGACATTAAAGCAAAAACTTGTCAATTGG
TAATAATGACTTTTTAAATAAAATGTTCGAGACTGTTTTAGCCTTTTATCGGCATTTCAT
TTGGAAAATATCAGTCTTTCTACAGATTTGTATCTTATTTTCCTCTGATAACCCAAATCA
TTTCTTAGCCCTTTCGTTTCATTGCACTGTTAATATTCAGTTATATTTTACTATATAGTA
GAGTGGGCATATTTTATGATCTAAAATAAAATATTTAACTTTCTTTCTGTGACTGATATC
CTTTTCTGCTTGTTCAGATTGAATTTGAAAAGCCAGAACAACTTCTGCCTACACTATATT
TCAACTGTTATTCCCTCCAATTGTACATGATAACACTCTTGTATTATTTTAAAAATCAAA
TACCTAAACATTTGGATCTGAAAGTGATTATTTGATTTACAAAATAAATTTTTACTATTC
AGAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               370-980, gnl|bosTau2|chr14 (47431996-47432602)
               

               
               370-980, gnl|Hg17|chr6 (13895384-13894796)
               

               
               370-980, gnl|Mm7|chr13 (42979299-42978732)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-980, gnl|bosTau2|chr14 (47431996-47432602)
               

               
               370-980, gnl|Hg17|chr6 (13895384-13894796)
               

               
               370-980, gnl|Mm7|chr13 (42979299-42978732)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	370-980, gnl\|bosTau2\|chr14 (47431996-47432602)
	370-980, gnl\|Hg17\|chr6 (13895384-13894796)
	370-980, gnl\|Mm7\|chr13 (42979299-42978732)

	elu (0.385356)
	cbe (0.239234)
	spc (0.226732)
	cmu (0.186393)
	cut (0.169924)
	cst (0.140036)
	lyg (0.133103)
	kid (0.129735)
	thg (0.126791)
	pgl (0.118483)