Non-Coding RNA Search

Ss1.1-Pig4-TMW8050O20.5

Sequence:


               
               TTTTTTTTTTTTTTTTTCTCCTCCCAGTGTACCAGGTTTTGCCTAAATCATGTTCAGGTG
ATTCTTAAAAAAAAAAAGAAAAAGAAAGAGAGGGTGTGCATTTATTTGAATCCTGGCCAG
AACCTCGTTGTGTAACAGTATTAGCATTGCCTCAGTCAAAGGTTTAATTTTTGTTTAAAC
CTAGAAGTGCAACAGCAGTTTCACCACCGTCTGCATTTGCGGAGGGGAAAAATTGTTTTC
AACCATGTGTTTTATTTTTTTTGCCTACCTCATTGTTTTTAATGCATTAAGAGGTGGTTT
AGTATATGTTTTTGGAGGGAAAACATTAATGCTTAATTTAATCTTAATACCAAAACTATC
TGATTGAAGTCTGACTGTTATTTTGTCACAGGTCTCAGTAGGCACAAGAGAAATTGTCCC
TGAAGAAGGGGAACAGCCAAAAGGCTTGTCATGCTGTCTGGTGCGTCTGCTTTCTGAGCT
GAGGCAGATGGCTCCGTTTCCACCAGATTCAGCCGTAGTGGTTGACGGGTGGCCATCGCC
CACGGCACAAGAGGCCTCACTGTTGTCACCTCGGTGTTGCAGACAGGTGGTCGTGTGGGG
ACACCCCCATGAACTGTTAACAGTGTTGCCAGAACCTTTCCTTGGGGCAGGGGTATGTCC
CTTTTCTAAAAATGCAATGCACTAAAACAATTTTAAGAATGTAGTTAATACTGCTCGTTC
ATAAGATAGCATCTTCCTGTGTTTTGCAAGGTGTGATGTTGAAGCCCTGGCTCTTCCCGT
TCTCTCCCTTGCTCTCTCATTCTCTCCCTGTTTTTTAAACAAGTTTTACTTTATGAATAT
GTTCACGACATTTGTAATAAATGTCTTGGGTAATAATTGGTTTCACTGGCTTCTGGTCAC
TCACTTCCTCGGAGAATGTTAATCTCTTGGTAAAGGGGCAGTGCCTGGCCTCGTGGCTCT
ACCGTCTGCCCACCCTTCCTCTCCTTGAATTCTGATGGGAATGCTGCGTTCACAAAACTA
AAGCTCGGAGTTTCATGGGAATAATCCTTATCTGTGGCGAATTTTCTCTTATAACCTGAA
AATGGAGGTTTTCCTCCCACCATACAGTGATCACTGGCACCTGTTTGCCGAGGCCCGGCC
TGGCATTCGTGTCCCATTTGGCATCTGCTATGACTTGTCATTCTCTTTCTTCTGGGTCAG
CATATTTGCCAGAGGCTCTCCTTTGAATTACAGAAACCTAGTGAAAAGAACAGAAACTCA
CAGATGCAGAAATAGCAGCTGGCCGCAGGCCCCCACCAGGACAGGCTGTTTTGAAAGGAC
GAGCTGGGTAGATGGGTTTTCTGTGCGTGTGACTTTGGCTTAGTGCGATGTCCAGAGCAG
AAAGAGCTCGTTCTTTCCCATTGGTTCGTACTTAACGTAGAGGAAATTGGGGAGCTCCTC
CCACTTGGGAGGGGCTCGAGAAGGGCAGACTCCGTCACCAGAGGACTGCTGTCATTGTCA
CGTTGCTGCCAGCAAACCTGCCTCGGCCTGGCTCTTGACCTGAGATGAAATGCACCACCA
CAGTGATCACGTGAGCCAGGAGGAGAAAGGGGCGTATCAGTTGCCGCCCCACCCGTGGCT
TTGGTGAAAGGTAAAAGTTGGGTAGGTGTCTTTGAAAAAATACTAAGCTTCTGATACTGA
CACAGAAGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTCTCCTCCCAGTGTACCAGGTTTTGCCTAAATCATGTTCAGGTG
ATTCTTAAAAAAAAAAAGAAAAAGAAAGAGAGGGTGTGCATTTATTTGAATCCTGGCCAG
AACCTCGTTGTGTAACAGTATTAGCATTGCCTCAGTCAAAGGTTTAATTTTTGTTTAAAC
CTAGAAGTGCAACAGCAGTTTCACCACCGTCTGCATTTGCGGAGGGGAAAAATTGTTTTC
AACCATGTGTTTTATTTTTTTTGCCTACCTCATTGTTTTTAATGCATTAAGAGGTGGTTT
AGTATATGTTTTTGGAGGGAAAACATTAATGCTTAATTTAATCTTAATACCAAAACTATC
TGATTGAAGTCTGACTGTTATTTTGTCACAGGTCTCAGTAGGCACAAGAGAAATTGTCCC
TGAAGAAGGGGAACAGCCAAAAGGCTTGTCATGCTGTCTGGTGCGTCTGCTTTCTGAGCT
GAGGCAGATGGCTCCGTTTCCACCAGATTCAGCCGTAGTGGTTGACGGGTGGCCATCGCC
CACGGCACAAGAGGCCTCACTGTTGTCACCTCGGTGTTGCAGACAGGTGGTCGTGTGGGG
ACACCCCCATGAACTGTTAACAGTGTTGCCAGAACCTTTCCTTGGGGCAGGGGTATGTCC
CTTTTCTAAAAATGCAATGCACTAAAACAATTTTAAGAATGTAGTTAATACTGCTCGTTC
ATAAGATAGCATCTTCCTGTGTTTTGCAAGGTGTGATGTTGAAGCCCTGGCTCTTCCCGT
TCTCTCCCTTGCTCTCTCATTCTCTCCCTGTTTTTTAAACAAGTTTTACTTTATGAATAT
GTTCACGACATTTGTAATAAATGTCTTGGGTAATAATTGGTTTCACTGGCTTCTGGTCAC
TCACTTCCTCGGAGAATGTTAATCTCTTGGTAAAGGGGCAGTGCCTGGCCTCGTGGCTCT
ACCGTCTGCCCACCCTTCCTCTCCTTGAATTCTGATGGGAATGCTGCGTTCACAAAACTA
AAGCTCGGAGTTTCATGGGAATAATCCTTATCTGTGGCGAATTTTCTCTTATAACCTGAA
AATGGAGGTTTTCCTCCCACCATACAGTGATCACTGGCACCTGTTTGCCGAGGCCCGGCC
TGGCATTCGTGTCCCATTTGGCATCTGCTATGACTTGTCATTCTCTTTCTTCTGGGTCAG
CATATTTGCCAGAGGCTCTCCTTTGAATTACAGAAACCTAGTGAAAAGAACAGAAACTCA
CAGATGCAGAAATAGCAGCTGGCCGCAGGCCCCCACCAGGACAGGCTGTTTTGAAAGGAC
GAGCTGGGTAGATGGGTTTTCTGTGCGTGTGACTTTGGCTTAGTGCGATGTCCAGAGCAG
AAAGAGCTCGTTCTTTCCCATTGGTTCGTACTTAACGTAGAGGAAATTGGGGAGCTCCTC
CCACTTGGGAGGGGCTCGAGAAGGGCAGACTCCGTCACCAGAGGACTGCTGTCATTGTCA
CGTTGCTGCCAGCAAACCTGCCTCGGCCTGGCTCTTGACCTGAGATGAAATGCACCACCA
CAGTGATCACGTGAGCCAGGAGGAGAAAGGGGCGTATCAGTTGCCGCCCCACCCGTGGCT
TTGGTGAAAGGTAAAAGTTGGGTAGGTGTCTTTGAAAAAATACTAAGCTTCTGATACTGA
CACAGAAGAGGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               179-1298, gnl|bosTau2|chr11 (3813084-3811953)
               

               
               179-1298, gnl|Hg17|chr2 (101967103-101968237)
               

               
               179-1298, gnl|Mm7|chr1 (40264226-40265229)
               


               
               1311-1689, gnl|bosTau2|chr11 (3811919-3811528)
               

               
               1311-1689, gnl|Hg17|chr2 (101968261-101968629)
               

               
               1311-1689, gnl|Mm7|chr1 (40265267-40265612)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-1298, gnl|bosTau2|chr11 (3813084-3811953)
               

               
               179-1298, gnl|Hg17|chr2 (101967103-101968237)
               

               
               179-1298, gnl|Mm7|chr1 (40264226-40265229)
               


               
               1311-1689, gnl|bosTau2|chr11 (3811919-3811528)
               

               
               1311-1689, gnl|Hg17|chr2 (101968261-101968629)
               

               
               1311-1689, gnl|Mm7|chr1 (40265267-40265612)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               fce (0.543183)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	179-1298, gnl\|bosTau2\|chr11 (3813084-3811953)
	179-1298, gnl\|Hg17\|chr2 (101967103-101968237)
	179-1298, gnl\|Mm7\|chr1 (40264226-40265229)

	1311-1689, gnl\|bosTau2\|chr11 (3811919-3811528)
	1311-1689, gnl\|Hg17\|chr2 (101968261-101968629)
	1311-1689, gnl\|Mm7\|chr1 (40265267-40265612)

	fce (0.543183)
	ebs (0.354904)
	fbs (0.350693)
	fhi (0.339155)
	ill (0.175593)
	ton (0.1755)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	nmm (0.132802)
	eep (0.122564)
	jej (0.0989218)