Non-Coding RNA Search

Ss1.1-Pig4-TMW8050P11.5

Sequence:


               
               CGGGCTCGCGCCCCGCGCCGCCCGCTCGCCAGCCCGCCCGCCATGGAGCCCGGCCCCGAC
GGCCCCGCAGCTCCCGGCCCCGCTGCCATCCGCGAGGGCTGGTTCCACGAGACGTGCAGC
CTGTGGCCCGGCCAGGCCCTGTCTCTTCAGGTGGAGCAGCTGCTACATCATCAACGCTCG
CGGTACCAGGATATCCTCGTCTTCCGCAGTAAGAGCTATGGCAACGTGCTGGTGTTGGAC
GGCGTCATCCAGTGCACCGAGAGAGATGAATTCTCCTACCAGGAGATGATAGCCAACCTG
CCCCTTTGCAGCCACCCCAACCCTCGCAAGGTGCTGATCATCGGGGGCGGGGATGGGGGC
GTCCTGAGGGAGGTGGTCAAGCACCCCGCCGTGGAGTCCGTGGTCCAGTGCGAGATTGAT
GAGGATGTCATTCAGGTCTCTAAGAAGTTCCTGCCAGGCATGGCTGTCAGCTACTCTAGC
TCAAAGCTGACCCTGCATGTGGGCGACGGTTTTGAGTTCATGAAACAGAACCAGGACGCC
TTCGACGTCATCATCACGGACTCCTCAGACCCCATGGGCCCTGCCGAGAGTCTCTTCAAG
GAGTCCTACTACCAGCTCATGAAGACTGCCCTCAAGGAGGAGGGCATCCTGTGCTGCCAG
GGCGAGTGCCAGTGGCTGCACCTAGACCTCATCAAGGAGATGCGGCAGTTCTGCAAGTCG
CTCTTCCCCGTGGTGGACTATGCCTACTGCACCATCCCCACCTACCCCAGCGGCCAGATC
GGCTTCATGCTCTGCAGCAAAAACCCAAGCACCAACTTTCGGGAGCCCGTGCAGCTGCTG
ACGCAGAAGCAGGTGGAGCAGAGGCAGCTGAGATACTACAACTCGGACGTGCACCGGGCG
GCCTTTGTCCTGCCCGAGTTTGCCCGTAAGGCCCTGAATGATGCGGACTGAGCCCAGGTG
CCGCTGCCGCCAAGCCCAGGACCTCGGCCGGGGAGCCTCCCACCAGCCCAGTGTCACAGG
CCCCAGAACGCTGGGCGGACTGTCTGTCCTTCCTGGTGTGGCATTCAGCCTCCAAGCCTA
TGCCAGCTGTGTACAGCACCACCTCCGCCTTCTGTCACCCCTCACTCACCAAACACGTGT
ATTTATAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTCGCGCCCCGCGCCGCCCGCTCGCCAGCCCGCCCGCCATGGAGCCCGGCCCCGAC
GGCCCCGCAGCTCCCGGCCCCGCTGCCATCCGCGAGGGCTGGTTCCACGAGACGTGCAGC
CTGTGGCCCGGCCAGGCCCTGTCTCTTCAGGTGGAGCAGCTGCTACATCATCAACGCTCG
CGGTACCAGGATATCCTCGTCTTCCGCAGTAAGAGCTATGGCAACGTGCTGGTGTTGGAC
GGCGTCATCCAGTGCACCGAGAGAGATGAATTCTCCTACCAGGAGATGATAGCCAACCTG
CCCCTTTGCAGCCACCCCAACCCTCGCAAGGTGCTGATCATCGGGGGCGGGGATGGGGGC
GTCCTGAGGGAGGTGGTCAAGCACCCCGCCGTGGAGTCCGTGGTCCAGTGCGAGATTGAT
GAGGATGTCATTCAGGTCTCTAAGAAGTTCCTGCCAGGCATGGCTGTCAGCTACTCTAGC
TCAAAGCTGACCCTGCATGTGGGCGACGGTTTTGAGTTCATGAAACAGAACCAGGACGCC
TTCGACGTCATCATCACGGACTCCTCAGACCCCATGGGCCCTGCCGAGAGTCTCTTCAAG
GAGTCCTACTACCAGCTCATGAAGACTGCCCTCAAGGAGGAGGGCATCCTGTGCTGCCAG
GGCGAGTGCCAGTGGCTGCACCTAGACCTCATCAAGGAGATGCGGCAGTTCTGCAAGTCG
CTCTTCCCCGTGGTGGACTATGCCTACTGCACCATCCCCACCTACCCCAGCGGCCAGATC
GGCTTCATGCTCTGCAGCAAAAACCCAAGCACCAACTTTCGGGAGCCCGTGCAGCTGCTG
ACGCAGAAGCAGGTGGAGCAGAGGCAGCTGAGATACTACAACTCGGACGTGCACCGGGCG
GCCTTTGTCCTGCCCGAGTTTGCCCGTAAGGCCCTGAATGATGCGGACTGAGCCCAGGTG
CCGCTGCCGCCAAGCCCAGGACCTCGGCCGGGGAGCCTCCCACCAGCCCAGTGTCACAGG
CCCCAGAACGCTGGGCGGACTGTCTGTCCTTCCTGGTGTGGCATTCAGCCTCCAAGCCTA
TGCCAGCTGTGTACAGCACCACCTCCGCCTTCTGTCACCCCTCACTCACCAAACACGTGT
ATTTATAACAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q99MI5_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q99MI5_RAT

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               77-467, gnl|bosTau2|chr11 (8393058-8393462)
               

               
               77-467, gnl|Hg17|chr1 (11054232-11053127)
               

               
               77-467, gnl|Mm7|chr9 (43617430-43617820)
               


               
               778-971, gnl|bosTau2|chr11 (8394170-8394363)
               

               
               778-971, gnl|Hg17|chr1 (11049407-11049168)
               

               
               778-971, gnl|Mm7|chr9 (43618132-43618310)
               


               
               1033-1152, gnl|bosTau2|chr16 (22257944-22258062)
               

               
               1033-1152, gnl|Hg17|chr1 (11049035-11048912)
               

               
               1033-1152, gnl|Mm7|chr4 (147584025-147584142)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-467, gnl|bosTau2|chr11 (8393058-8393462)
               

               
               77-467, gnl|Hg17|chr1 (11054232-11053127)
               

               
               77-467, gnl|Mm7|chr9 (43617430-43617820)
               


               
               778-971, gnl|bosTau2|chr11 (8394170-8394363)
               

               
               778-971, gnl|Hg17|chr1 (11049407-11049168)
               

               
               778-971, gnl|Mm7|chr9 (43618132-43618310)
               


               
               1033-1152, gnl|bosTau2|chr16 (22257944-22258062)
               

               
               1033-1152, gnl|Hg17|chr1 (11049035-11048912)
               

               
               1033-1152, gnl|Mm7|chr4 (147584025-147584142)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	77-467, gnl\|bosTau2\|chr11 (8393058-8393462)
	77-467, gnl\|Hg17\|chr1 (11054232-11053127)
	77-467, gnl\|Mm7\|chr9 (43617430-43617820)

	778-971, gnl\|bosTau2\|chr11 (8394170-8394363)
	778-971, gnl\|Hg17\|chr1 (11049407-11049168)
	778-971, gnl\|Mm7\|chr9 (43618132-43618310)

	1033-1152, gnl\|bosTau2\|chr16 (22257944-22258062)
	1033-1152, gnl\|Hg17\|chr1 (11049035-11048912)
	1033-1152, gnl\|Mm7\|chr4 (147584025-147584142)

	amn (0.417711)
	elu (0.385356)
	ecc (0.345105)
	mcp (0.341297)
	lnt (0.284616)
	cga (0.279096)
	fce (0.271592)
	ebs (0.236602)
	nms (0.213858)
	fcc (0.197785)
	col (0.195008)
	nco (0.161734)
	cag (0.151194)
	pty (0.142714)
	cov (0.132153)
	cly (0.120642)
	clu (0.119646)
	med (0.116252)
	nbm (0.0993246)