Non-Coding RNA Search

Ss1.1-Pig4-TMW8050P15.3

Sequence:


               
               TTTTTTTTCTGGTACTTTTTATTCCCCACGCCTTGTCTTCTCCCTGGATATCCACCCTTT
GGGCTGCCTTGCTCATCTTTATGCCCCAGCGCTAGGTAGGGGCCCAGCACATGGTAGGCA
CTCCATCAGTGTTTGTTGAACTGAGAACATTGTTGACTGTGGCTTTTGTCAGGGTGTCTT
ATCTTTTGCAGCTCATCCCTTACCCCTTTTAATTTGCTGCTTCTAATCTGTGTGGTCTGA
GAATTTGTGAAACCAGTGTTGTTAGAAGTGTCTGTAATCTGAGTCAATAAGCTCTGCATG
GTGGCCAAGGGCCTCTCTTATGGCATTAAAATGCGTGGACTTGGTGACAGCACTTTCAGT
GGCTCAGAAGCCATTTTTCACAGAATCACGGAATCTAGAATTTTCCTGCTGGAAAGGACC
AAAAAATTGGTTTTGACCAATCCCCTGGTTTTCCAACAGATGAAACAAGGCCCAGAGAGG
TTAGAAGACTGGGTCAAAATCACAGAGCTGTCTGGTGCCAGAGCTAGCCTAGAGCAGAGT
CCCCTGACCCCAAGCCCGGTGCTCATTCTACTACCTCTCACACTTCACAACATTTTCCTC
AACACTGAGGGCCCAGAAAGTCTGCTCTCTCCAGAATGATGAGCCCAGAGGAAGGCTAAG
AACTCATGTGGGAGAGGAAGCAGAAGATTTGGCAGGGGCTTCTCAACGCTTGGGAGATAG
GGAAGGACAAAGAAACATTATGACCCAGGGTGTATTCATTGCTCCCTGGGATACCGGCTC
GGGATTAAAGTGGGCCAGGACCTTTGTGGCCCTCCCCTTCCCCATTCATTGCCGTCTGTG
AGAAATAGAGGTGCTCCTGAGCAAGGAAACCTGCCAAAGGTTTACATTCGCACCCCAGCC
TCGATAGCTAGAACCCCCAGAGAAGCAGCTAACTGGAGCTCATCTGTAGCCTCCTGACTC
TCAGGAGAAAACCAGAATTATTAACTCTAAAATGTACTTCCGAAATAGGCCAAGCCAGAG
GGCAGTGGGTCAACTAAGTGTTAATCAAGTTAAAGTAGAAAAGACAGTACACTGCTTTTC
TTTTAGTTGTTGTCTTCCCTTTGCTTCATGTTTTGCTATTTCCATGTGTCTTAGAATGTA
AAATCGATTGTTTAAAGTTTTGTTCTGAATAAATATTTATCTTTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTCTGGTACTTTTTATTCCCCACGCCTTGTCTTCTCCCTGGATATCCACCCTTT
GGGCTGCCTTGCTCATCTTTATGCCCCAGCGCTAGGTAGGGGCCCAGCACATGGTAGGCA
CTCCATCAGTGTTTGTTGAACTGAGAACATTGTTGACTGTGGCTTTTGTCAGGGTGTCTT
ATCTTTTGCAGCTCATCCCTTACCCCTTTTAATTTGCTGCTTCTAATCTGTGTGGTCTGA
GAATTTGTGAAACCAGTGTTGTTAGAAGTGTCTGTAATCTGAGTCAATAAGCTCTGCATG
GTGGCCAAGGGCCTCTCTTATGGCATTAAAATGCGTGGACTTGGTGACAGCACTTTCAGT
GGCTCAGAAGCCATTTTTCACAGAATCACGGAATCTAGAATTTTCCTGCTGGAAAGGACC
AAAAAATTGGTTTTGACCAATCCCCTGGTTTTCCAACAGATGAAACAAGGCCCAGAGAGG
TTAGAAGACTGGGTCAAAATCACAGAGCTGTCTGGTGCCAGAGCTAGCCTAGAGCAGAGT
CCCCTGACCCCAAGCCCGGTGCTCATTCTACTACCTCTCACACTTCACAACATTTTCCTC
AACACTGAGGGCCCAGAAAGTCTGCTCTCTCCAGAATGATGAGCCCAGAGGAAGGCTAAG
AACTCATGTGGGAGAGGAAGCAGAAGATTTGGCAGGGGCTTCTCAACGCTTGGGAGATAG
GGAAGGACAAAGAAACATTATGACCCAGGGTGTATTCATTGCTCCCTGGGATACCGGCTC
GGGATTAAAGTGGGCCAGGACCTTTGTGGCCCTCCCCTTCCCCATTCATTGCCGTCTGTG
AGAAATAGAGGTGCTCCTGAGCAAGGAAACCTGCCAAAGGTTTACATTCGCACCCCAGCC
TCGATAGCTAGAACCCCCAGAGAAGCAGCTAACTGGAGCTCATCTGTAGCCTCCTGACTC
TCAGGAGAAAACCAGAATTATTAACTCTAAAATGTACTTCCGAAATAGGCCAAGCCAGAG
GGCAGTGGGTCAACTAAGTGTTAATCAAGTTAAAGTAGAAAAGACAGTACACTGCTTTTC
TTTTAGTTGTTGTCTTCCCTTTGCTTCATGTTTTGCTATTTCCATGTGTCTTAGAATGTA
AAATCGATTGTTTAAAGTTTTGTTCTGAATAAATATTTATCTTTTGTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               19-155, - strand, RNAz p=0.931332
               

               
               343-433, - strand, RNAz p=0.694698
               

               
               879-1014, - strand, RNAz p=0.687851

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-155, - strand, RNAz p=0.931332
               

               
               343-433, - strand, RNAz p=0.694698
               

               
               879-1014, - strand, RNAz p=0.687851

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1188, gnl|bosTau2|chr13 (41986061-41984878)
               

               
               1-1188, gnl|Hg17|chr20 (227717-228956)
               

               
               1-1188, gnl|Mm7|chr2 (152154152-152152812)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1188, gnl|bosTau2|chr13 (41986061-41984878)
               

               
               1-1188, gnl|Hg17|chr20 (227717-228956)
               

               
               1-1188, gnl|Mm7|chr2 (152154152-152152812)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ova (0.387397)
               

               
               elu (0.385356)
               

               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	19-155, - strand, RNAz p=0.931332
	343-433, - strand, RNAz p=0.694698
	879-1014, - strand, RNAz p=0.687851

	1-1188, gnl\|bosTau2\|chr13 (41986061-41984878)
	1-1188, gnl\|Hg17\|chr20 (227717-228956)
	1-1188, gnl\|Mm7\|chr2 (152154152-152152812)

	ova (0.387397)
	elu (0.385356)
	cte (0.29274)
	ece (0.229305)
	cut (0.169924)
	spl (0.143184)
	cst (0.140036)
	hlv (0.139256)
	nmm (0.132802)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	ldo (0.0970026)