Non-Coding RNA Search

Ss1.1-Pig4-TMW8050P19.3

Sequence:


               
               CCAGTCAGGTGCCAGGAGTCTGAAAGAATACACTCTAATGGAGCTGCTTGTGATGCACAT
GGAAGAGCCTTGTTTTGACTTCCTTCGAACCAAGCAGACCCTTGGGTATCATGTCTATCC
TACATGTAGGAACACATCTGGGATTCTTGGATTCTCTGTCACCGTGGGGACTCAGGCAAC
GAAATACAACTCTGAAGTTGTTGATAAAAAGATAGAAGAGTTTCTTTCTAGCTTTGAGGA
GAAGATCGAGAACCTCACTGAGGATGCATTCAACACCCAGGTCACAGCGCTGATCAAGCT
GAAGGAGTGTGAGGACACGCACCTTGGGGAGGAGGTGGACAGGAACTGGAATGAAGTGGT
GACCCAGCAGTATCTCTTCGACCGCCTTGCCCATGAGATTGAAGCACTGAAGTCATTCTC
AAAATCAGACCTAGTCAGCTGGTTCAAGGCCCACAGAGGACCGGGAAGTAAAATGCTCAG
CGTTCATGTTGTTGGATTTGGGAAGCACGAGCTGGAGGAGGATGGCATCCCTTCCAGTGA
GGATTCGAACTCTTCTTGTGAAGTGATGCAGCTGACCTACCTGCCAGCCTCTCCTCTGCT
GGCAGATTCCACCATCCCCATTACTGATATCAGGGCTTTCACATCAACACTTAACCTTCT
CCCCTACCATAAAATAGTCAAATAAACTGCAGTCTCGTTGGCCTGAAGCACTGTGTATTT
AAAAGTGTTTGTATTTTATGAAGTTACACTACTACTGCCTTAGGGCTTCCACTGAATTTT
TTGCACTGGCATCGTAGAATTTGATTTACTTCCCCACCCGTCTTCTGTTGTAACTAACAA
ATCGATGGTTACCATATCATCAGCTGCGGAGAGAAACTGGGGTGGGCCAACTGTAACCAG
TCTGAGAAGCCCTGGCCTGTCTTGGTCCTCTCAGATTGAGAGTCCAGTCCTCTGTGACCG
AGGCCCTAAGTAACTGATGTCATCTTAGTACCGAAGTGCCAGGTGCTAATACTAATACCT
GTGTTGTTGTTTTTAATGTATTTAAAAATAAAGATAATTCTGTATTGCCCTTCAGAATGA
GCCATTCACTGCTGTGGCATTCCTTTTGTTATATTTTCAATGTGGGATGGGGATCTAAAG
GTAAACATTCTTCCCAAATCCTCTAAGGCAATAAAATATTTTTGGATAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTCAGGTGCCAGGAGTCTGAAAGAATACACTCTAATGGAGCTGCTTGTGATGCACAT
GGAAGAGCCTTGTTTTGACTTCCTTCGAACCAAGCAGACCCTTGGGTATCATGTCTATCC
TACATGTAGGAACACATCTGGGATTCTTGGATTCTCTGTCACCGTGGGGACTCAGGCAAC
GAAATACAACTCTGAAGTTGTTGATAAAAAGATAGAAGAGTTTCTTTCTAGCTTTGAGGA
GAAGATCGAGAACCTCACTGAGGATGCATTCAACACCCAGGTCACAGCGCTGATCAAGCT
GAAGGAGTGTGAGGACACGCACCTTGGGGAGGAGGTGGACAGGAACTGGAATGAAGTGGT
GACCCAGCAGTATCTCTTCGACCGCCTTGCCCATGAGATTGAAGCACTGAAGTCATTCTC
AAAATCAGACCTAGTCAGCTGGTTCAAGGCCCACAGAGGACCGGGAAGTAAAATGCTCAG
CGTTCATGTTGTTGGATTTGGGAAGCACGAGCTGGAGGAGGATGGCATCCCTTCCAGTGA
GGATTCGAACTCTTCTTGTGAAGTGATGCAGCTGACCTACCTGCCAGCCTCTCCTCTGCT
GGCAGATTCCACCATCCCCATTACTGATATCAGGGCTTTCACATCAACACTTAACCTTCT
CCCCTACCATAAAATAGTCAAATAAACTGCAGTCTCGTTGGCCTGAAGCACTGTGTATTT
AAAAGTGTTTGTATTTTATGAAGTTACACTACTACTGCCTTAGGGCTTCCACTGAATTTT
TTGCACTGGCATCGTAGAATTTGATTTACTTCCCCACCCGTCTTCTGTTGTAACTAACAA
ATCGATGGTTACCATATCATCAGCTGCGGAGAGAAACTGGGGTGGGCCAACTGTAACCAG
TCTGAGAAGCCCTGGCCTGTCTTGGTCCTCTCAGATTGAGAGTCCAGTCCTCTGTGACCG
AGGCCCTAAGTAACTGATGTCATCTTAGTACCGAAGTGCCAGGTGCTAATACTAATACCT
GTGTTGTTGTTTTTAATGTATTTAAAAATAAAGATAATTCTGTATTGCCCTTCAGAATGA
GCCATTCACTGCTGTGGCATTCCTTTTGTTATATTTTCAATGTGGGATGGGGATCTAAAG
GTAAACATTCTTCCCAAATCCTCTAAGGCAATAAAATATTTTTGGATAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860094|ref|XP_588554.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860094|ref|XP_588554.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               483-681, - strand, RNAz p=0.825376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-681, - strand, RNAz p=0.825376

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               278-406, gnl|bosTau2|chr3 (64048807-64048935)
               

               
               278-406, gnl|Hg17|chr1 (51968345-51968220)
               

               
               278-406, gnl|Mm7|chr4 (108436506-108436628)
               


               
               483-1191, gnl|bosTau2|chr3 (64050170-64050896)
               

               
               483-1191, gnl|Hg17|chr1 (51967131-51966379)
               

               
               483-1191, gnl|Mm7|chr4 (108437370-108437996)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               278-406, gnl|bosTau2|chr3 (64048807-64048935)
               

               
               278-406, gnl|Hg17|chr1 (51968345-51968220)
               

               
               278-406, gnl|Mm7|chr4 (108436506-108436628)
               


               
               483-1191, gnl|bosTau2|chr3 (64050170-64050896)
               

               
               483-1191, gnl|Hg17|chr1 (51967131-51966379)
               

               
               483-1191, gnl|Mm7|chr4 (108437370-108437996)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               clu (0.239292)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               pan (0.23596)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	278-406, gnl\|bosTau2\|chr3 (64048807-64048935)
	278-406, gnl\|Hg17\|chr1 (51968345-51968220)
	278-406, gnl\|Mm7\|chr4 (108436506-108436628)

	483-1191, gnl\|bosTau2\|chr3 (64050170-64050896)
	483-1191, gnl\|Hg17\|chr1 (51967131-51966379)
	483-1191, gnl\|Mm7\|chr4 (108437370-108437996)

	clu (0.239292)
	pan (0.23596)
	tes (0.207814)
	hea (0.204499)
	gul (0.177588)
	sin (0.174948)
	eye (0.170503)
	cki (0.165235)
	lun (0.150489)
	hyp (0.142837)
	che (0.136314)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)