Ss1.1-Pig4-TMW8051A01.3.5
|
TATGAATTAAGTGAAAAGATGTTGTCTGCATGCAACTTACTGAAAAATAATATAAATGAC
CCCAGAGCTTTGACCAGCAAGGATATGAGGTTCTGTCTGAACACTCTCCAGCATGAGTGG
TTCCGCGTGTCCAGTCAGAAGTCAGCCATCCCGGCCATGGTGGGGGACTACATCACCGCC
TTCGAGGCCATCTCCCCAGATGTTCTCCGCCACATCATCAACATGGCAGATGGCAATGGC
AACACCGCCCTCCACTACAGCGTGTCCCACTCCAACTTTGAGATCGTCAAGCTGCTCTTG
GATGCTGATGTGTGTAACGTGGATCACCAGAACAAGGCAGGGTACACCCCCATTATGCTG
GCAGCCCTCGCCGCCGTGGAAGCAGAGAAGGACATGCAAGTTGTGGAAGAACTCTTTGGC
TGTGGGGACGTGAACGCCAAAGCCAGCCAGGCAGGACAGACAGCCCTCATGCTGGCAGTC
AGTCATGGGCGGATAGATATGGTGAAGGGCCTGCTGGCCTGTGGGGCTGACGTCAACATC
CAGGACGACGAGGGTTCCACCGCCCTGATGTGTGCTAGTGAGCATGGCCACGTGGAGATT
GTCAAGCTGCTGCTGGCCCAGCCGGGCTGCAATGGCCACCTGGAGGACAACGATGGCAGC
ACCGCGCTCTCAATAGCCCTGGAAGCAGGACACAAGGACATTGCCGTTCTGCTGTACGCC
CACGTCAACTTCGCGAAAGCCCAGTCTCCGGGCACCCCAAGGCTTGGAAGGAAGACATCT
CCTGGTCCCACCCACCGAGGTTCATTTGATTGATTGTGTGCAAATAGCCGTCCATTTATA
TGCCACCACCGTTTAGCTGCTAATTGTTCCTGTTGGGGTGACAGATACTGAATGTATATC
GTGCCTGAGCTTACCAGCAAACAACACATAAAGCCAAGGGCTGAAGGCTAGAGCTGTCAC
AGTGGAAGCTGAGCCAGCAGGAGATTGCTGGCTGGGCACACACCACCTCCCTTCTGGCCA
TCTTCCCTCTGTGTAGAGCACACTTGCTGTCAAGTCTCTTCTCCTGCTCCGTTATGTACA
GTTGTAGGAAGTTGTAACCTGACCTGAGTGGGCAACTTCTATTCCTTCTCTCCTCTCCAC
CCCGCACCCCCACCGCTGCTGAGAAGTGTCAGGTTCTCATTGACATGGTGTTTTTAAATG
TTCTCACAAATATTTATATTTACTAAATGTGGAACCATTGGAAAACTCTTTGAAAATTCC
ATTCCAGGATGGTTTTGTTGCTTTCTCTTTTGTCTTTATTATTTTCAAGTAAGGAAGTGG
AGATGACTTTGATCATCAGTGAATTGGGCCTGGGCTGGTAGGTTTCTGGTTTAAAAATAA
AAGATGGAACTCTCAGACAGTATAAAACTTACAAAAGGAAGTCTTTTCAGTTGGTTTTAT
CTAGGTGGGTGTATTATATGACTTTTTATATAAAGGGTATCTATATAAAATTGACACAGT
ATTTTCAACTTTTATATTCCATAATAATTAAATACATGAAGAATGACCTGTAACATTACC
ATATTTTTATTAATAATTGCACAACTGTGTATCTAATGATAAAGGTTGAATTGTGTTAGA
GGAATTGGCTACATATTTGCCTCTAGAGAAACATAGTATAGTTCTCCACATATTTATGGA
CTCCTTTATCCCACGTCACATTTGCTTTGGTCTTATATGTATTTAAATGTTTGAAGTGCC
TTAGACTCTTGCCATATTTTCAAAATAAAATTTCATTAAGCAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TATGAATTAAGTGAAAAGATGTTGTCTGCATGCAACTTACTGAAAAATAATATAAATGAC
CCCAGAGCTTTGACCAGCAAGGATATGAGGTTCTGTCTGAACACTCTCCAGCATGAGTGG
TTCCGCGTGTCCAGTCAGAAGTCAGCCATCCCGGCCATGGTGGGGGACTACATCACCGCC
TTCGAGGCCATCTCCCCAGATGTTCTCCGCCACATCATCAACATGGCAGATGGCAATGGC
AACACCGCCCTCCACTACAGCGTGTCCCACTCCAACTTTGAGATCGTCAAGCTGCTCTTG
GATGCTGATGTGTGTAACGTGGATCACCAGAACAAGGCAGGGTACACCCCCATTATGCTG
GCAGCCCTCGCCGCCGTGGAAGCAGAGAAGGACATGCAAGTTGTGGAAGAACTCTTTGGC
TGTGGGGACGTGAACGCCAAAGCCAGCCAGGCAGGACAGACAGCCCTCATGCTGGCAGTC
AGTCATGGGCGGATAGATATGGTGAAGGGCCTGCTGGCCTGTGGGGCTGACGTCAACATC
CAGGACGACGAGGGTTCCACCGCCCTGATGTGTGCTAGTGAGCATGGCCACGTGGAGATT
GTCAAGCTGCTGCTGGCCCAGCCGGGCTGCAATGGCCACCTGGAGGACAACGATGGCAGC
ACCGCGCTCTCAATAGCCCTGGAAGCAGGACACAAGGACATTGCCGTTCTGCTGTACGCC
CACGTCAACTTCGCGAAAGCCCAGTCTCCGGGCACCCCAAGGCTTGGAAGGAAGACATCT
CCTGGTCCCACCCACCGAGGTTCATTTGATTGATTGTGTGCAAATAGCCGTCCATTTATA
TGCCACCACCGTTTAGCTGCTAATTGTTCCTGTTGGGGTGACAGATACTGAATGTATATC
GTGCCTGAGCTTACCAGCAAACAACACATAAAGCCAAGGGCTGAAGGCTAGAGCTGTCAC
AGTGGAAGCTGAGCCAGCAGGAGATTGCTGGCTGGGCACACACCACCTCCCTTCTGGCCA
TCTTCCCTCTGTGTAGAGCACACTTGCTGTCAAGTCTCTTCTCCTGCTCCGTTATGTACA
GTTGTAGGAAGTTGTAACCTGACCTGAGTGGGCAACTTCTATTCCTTCTCTCCTCTCCAC
CCCGCACCCCCACCGCTGCTGAGAAGTGTCAGGTTCTCATTGACATGGTGTTTTTAAATG
TTCTCACAAATATTTATATTTACTAAATGTGGAACCATTGGAAAACTCTTTGAAAATTCC
ATTCCAGGATGGTTTTGTTGCTTTCTCTTTTGTCTTTATTATTTTCAAGTAAGGAAGTGG
AGATGACTTTGATCATCAGTGAATTGGGCCTGGGCTGGTAGGTTTCTGGTTTAAAAATAA
AAGATGGAACTCTCAGACAGTATAAAACTTACAAAAGGAAGTCTTTTCAGTTGGTTTTAT
CTAGGTGGGTGTATTATATGACTTTTTATATAAAGGGTATCTATATAAAATTGACACAGT
ATTTTCAACTTTTATATTCCATAATAATTAAATACATGAAGAATGACCTGTAACATTACC
ATATTTTTATTAATAATTGCACAACTGTGTATCTAATGATAAAGGTTGAATTGTGTTAGA
GGAATTGGCTACATATTTGCCTCTAGAGAAACATAGTATAGTTCTCCACATATTTATGGA
CTCCTTTATCCCACGTCACATTTGCTTTGGTCTTATATGTATTTAAATGTTTGAAGTGCC
TTAGACTCTTGCCATATTTTCAAAATAAAATTTCATTAAGCAAAAAAA
|
|
gi|55662012|emb|CAH70389.1| |
Protein identifier
|
gi|55662012|emb|CAH70389.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
447-629, gnl|bosTau2|chr7 (11064739-11064557) |
|
447-629, gnl|canFam2|chr20 (53092858-53092647) |
|
447-629, gnl|danRer3|chr14 (52159207-52159418) |
|
447-629, gnl|dasNov1|scaffold_9741 (92565-92750) |
|
447-629, gnl|echTel1|scaffold_314974 (992-1203) |
|
447-629, gnl|fr1|chrUn (67644297-67644519) |
|
447-629, gnl|galGal2|chr8 (27690094-27690305) |
|
447-629, gnl|hg17|chr19 (11141717-11141928) |
|
447-629, gnl|Hg17|chr19 (11141928-11141746) |
|
447-629, gnl|loxAfr1|scaffold_954 (56353-56564) |
|
447-629, gnl|mm7|chr9 (21651495-21651706) |
|
447-629, gnl|Mm7|chr9 (21651705-21651524) |
|
447-629, gnl|monDom2|scaffold_106 (3148250-3148459) |
|
447-629, gnl|oryCun1|scaffold_197172 (582-793) |
|
447-629, gnl|panTro1|chr20 (11539471-11539682) |
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447-629, gnl|rheMac2|chr19 (10990058-10990269) |
|
447-629, gnl|rn3|chr8 (20868984-20869194) |
|
447-629, gnl|tetNig1|chr3 (11748323-11748116) |
|
447-629, gnl|xenTro1|scaffold_1142 (33213-33003) |
| |
|
1479-1788, gnl|bosTau2|chr5 (68524286-68524595) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
447-629, gnl|bosTau2|chr7 (11064739-11064557) |
|
447-629, gnl|canFam2|chr20 (53092858-53092647) |
|
447-629, gnl|danRer3|chr14 (52159207-52159418) |
|
447-629, gnl|dasNov1|scaffold_9741 (92565-92750) |
|
447-629, gnl|echTel1|scaffold_314974 (992-1203) |
|
447-629, gnl|fr1|chrUn (67644297-67644519) |
|
447-629, gnl|galGal2|chr8 (27690094-27690305) |
|
447-629, gnl|hg17|chr19 (11141717-11141928) |
|
447-629, gnl|Hg17|chr19 (11141928-11141746) |
|
447-629, gnl|loxAfr1|scaffold_954 (56353-56564) |
|
447-629, gnl|mm7|chr9 (21651495-21651706) |
|
447-629, gnl|Mm7|chr9 (21651705-21651524) |
|
447-629, gnl|monDom2|scaffold_106 (3148250-3148459) |
|
447-629, gnl|oryCun1|scaffold_197172 (582-793) |
|
447-629, gnl|panTro1|chr20 (11539471-11539682) |
|
447-629, gnl|rheMac2|chr19 (10990058-10990269) |
|
447-629, gnl|rn3|chr8 (20868984-20869194) |
|
447-629, gnl|tetNig1|chr3 (11748323-11748116) |
|
447-629, gnl|xenTro1|scaffold_1142 (33213-33003) |
| |
|
1479-1788, gnl|bosTau2|chr5 (68524286-68524595) |
|
gul (0.710353) |
|
aor (0.585823) |
|
pro (0.512033) |
|
kid (0.389206) |
|
cki (0.330469) |
|
sme (0.305437) |
|
lin (0.291206) |
|
csk (0.281492) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
lun (0.150489) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
gul (0.710353) |
|
aor (0.585823) |
|
pro (0.512033) |
|
kid (0.389206) |
|
cki (0.330469) |
|
sme (0.305437) |
|
lin (0.291206) |
|
csk (0.281492) |
|
mgp (0.230681) |
|
fcc (0.197785) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
lun (0.150489) |
|
spl (0.143184) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
cty (0.10408) |
