Non-Coding RNA Search

Ss1.1-Pig4-TMW8051A04.3

Sequence:


               
               CTTCAGATTTATCATTTTTCTGACATATGTTGGAATAGTTTTTTCCATTCTTTCTATTGT
CCTGATTTGAATATTCTCTTCACCTCTAAAAATTTTAACAGGTTTTCCCCTTAATTATTT
AATAATAGATTGCCCCATTAGTAACTGATTAATGCACTTTGACCTTCTCTGTAGTAATTC
TTTTAACTTAGCCTAGCTTTGACTCTGTCAAGATGGCTGCTATCAGAGGTTTGACATTAT
GGACACTGGGAGGAAGCCTAAGCCAGCTGAGTGCCTGTCATAGCTGAATCTTGATTTGAG
GGTGGCCTCATAACTCATGAAATAGGGACTTTGGCAGATTTCAGTAGCATTGCATGAACA
AGTAGTATTGAGACAAAATAATCAGAGAGTAGCAAACCCCTGTTCCATGTGGAAAGAAAA
AAAAATTATTTTTGTCCTTAGCTACTCTTGCTTTTACATCTTGGAACAACAAGAAGAACA
TTTTTAAACTTGTGTATCTGTACTTTAAAACACTGCCATCAAAAAGCAGACTTAATGTAA
AAGGGTTGCCTCATCCAGAAATTGTTGGTGTAAAGGGGGGAGATTGGGGTCTCCCCAGTC
CTATCTTTATTTTTATTTTATCCTACATATGCTAGGAAATGTGGTATGGTCTCTTAAAAG
CCCTATTTGTCTTCAGAGTAGCAACCCTGCCTTTTTGTTGTGGAGGGGGAAAGCTATTGC
TTTGTCTTACAGAGCAAACGTCTGCCAACTGCCCCTTCGTTACATAAGTCTGAACTTTGG
TAATATGTGACTATGGAGATTAAGCCTTCTGTAAAGACTTCTTATTGAGGTGAATGCTCA
TATTGAAATGTAGTTACCTACAATATTTACTAGAGATTTATGAGATTAAATTAAGAGATA
ACGTAAGAAAGTAGACTTTTTTTGTTCTACATAATGCTTGATGATTCATTTAGGGACCTA
GAAATGTTGTGTGAAAATGTATAAATATCACTCAAAAGGCTTTCTGCCCTATATTTTTAA
AATACAGAATAGTTATATTTGAAGTAGTCCTGGCCCTAGTTCTATAGGGCTTGGCTATTT
AATATTTTTATGGAAGAAACGTTTAGTTCCGGAAAAGGTAAATGCTTGTATATATTTTTG
CAGCCTGGGATCTCCCTTATTCCATTTCTTCCTTTAATTTAAATGGCCACATGTATATGT
CTCTCCCTGCTGTGTTAGGAAAATGGGGGCTGGATATCCCAAGAATCAGAGGTTATATAA
AAATAATGCAAATAGACAGTGGACATAAATATCTATCAAATGCTATCTTAAATTTTGGTC
CAAACTGAACATTTGGAAATAGATTTATTGTAAGTGTTTAATTAGAGCGATTTCTTAAAT
CTGAGCTAAATTGCTTTTAGAGTCCTTTTTCTTTGTAAGCATTGTAAATGCTAATAAATC
CTGTTAATTTTTTTACTGCATGTTATGTTGAAATAAAAACAAAGTAAAATGAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGATTTATCATTTTTCTGACATATGTTGGAATAGTTTTTTCCATTCTTTCTATTGT
CCTGATTTGAATATTCTCTTCACCTCTAAAAATTTTAACAGGTTTTCCCCTTAATTATTT
AATAATAGATTGCCCCATTAGTAACTGATTAATGCACTTTGACCTTCTCTGTAGTAATTC
TTTTAACTTAGCCTAGCTTTGACTCTGTCAAGATGGCTGCTATCAGAGGTTTGACATTAT
GGACACTGGGAGGAAGCCTAAGCCAGCTGAGTGCCTGTCATAGCTGAATCTTGATTTGAG
GGTGGCCTCATAACTCATGAAATAGGGACTTTGGCAGATTTCAGTAGCATTGCATGAACA
AGTAGTATTGAGACAAAATAATCAGAGAGTAGCAAACCCCTGTTCCATGTGGAAAGAAAA
AAAAATTATTTTTGTCCTTAGCTACTCTTGCTTTTACATCTTGGAACAACAAGAAGAACA
TTTTTAAACTTGTGTATCTGTACTTTAAAACACTGCCATCAAAAAGCAGACTTAATGTAA
AAGGGTTGCCTCATCCAGAAATTGTTGGTGTAAAGGGGGGAGATTGGGGTCTCCCCAGTC
CTATCTTTATTTTTATTTTATCCTACATATGCTAGGAAATGTGGTATGGTCTCTTAAAAG
CCCTATTTGTCTTCAGAGTAGCAACCCTGCCTTTTTGTTGTGGAGGGGGAAAGCTATTGC
TTTGTCTTACAGAGCAAACGTCTGCCAACTGCCCCTTCGTTACATAAGTCTGAACTTTGG
TAATATGTGACTATGGAGATTAAGCCTTCTGTAAAGACTTCTTATTGAGGTGAATGCTCA
TATTGAAATGTAGTTACCTACAATATTTACTAGAGATTTATGAGATTAAATTAAGAGATA
ACGTAAGAAAGTAGACTTTTTTTGTTCTACATAATGCTTGATGATTCATTTAGGGACCTA
GAAATGTTGTGTGAAAATGTATAAATATCACTCAAAAGGCTTTCTGCCCTATATTTTTAA
AATACAGAATAGTTATATTTGAAGTAGTCCTGGCCCTAGTTCTATAGGGCTTGGCTATTT
AATATTTTTATGGAAGAAACGTTTAGTTCCGGAAAAGGTAAATGCTTGTATATATTTTTG
CAGCCTGGGATCTCCCTTATTCCATTTCTTCCTTTAATTTAAATGGCCACATGTATATGT
CTCTCCCTGCTGTGTTAGGAAAATGGGGGCTGGATATCCCAAGAATCAGAGGTTATATAA
AAATAATGCAAATAGACAGTGGACATAAATATCTATCAAATGCTATCTTAAATTTTGGTC
CAAACTGAACATTTGGAAATAGATTTATTGTAAGTGTTTAATTAGAGCGATTTCTTAAAT
CTGAGCTAAATTGCTTTTAGAGTCCTTTTTCTTTGTAAGCATTGTAAATGCTAATAAATC
CTGTTAATTTTTTTACTGCATGTTATGTTGAAATAAAAACAAAGTAAAATGAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               967-1205, + strand, RNAz p=0.996098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               967-1205, + strand, RNAz p=0.996098

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1030-1090, + strand, RNAmicro p=0.991928

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1030-1090, + strand, RNAmicro p=0.991928

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031483, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031483, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               967-1499, gnl|bosTau2|chr16 (20102040-20101526)
               

               
               967-1499, gnl|Hg17|chr20 (32561456-32561975)
               

               
               967-1499, gnl|Mm7|chr2 (154967187-154967712)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               967-1499, gnl|bosTau2|chr16 (20102040-20101526)
               

               
               967-1499, gnl|Hg17|chr20 (32561456-32561975)
               

               
               967-1499, gnl|Mm7|chr2 (154967187-154967712)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               amn (0.417711)
               

               
               sag (0.36543)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sag (0.36543)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	967-1499, gnl\|bosTau2\|chr16 (20102040-20101526)
	967-1499, gnl\|Hg17\|chr20 (32561456-32561975)
	967-1499, gnl\|Mm7\|chr2 (154967187-154967712)

	amn (0.417711)
	sag (0.36543)
	ste (0.270416)
	ret (0.257467)
	thg (0.253582)
	ecc (0.23007)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	tbr (0.154178)
	eli (0.151814)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	nmm (0.132802)
	bla (0.124347)
	nbm (0.0993246)
	ldo (0.0970026)