Non-Coding RNA Search

Ss1.1-Pig4-TMW8051A13.5

Sequence:


               
               CACAGCAACACAAATCCAAGCTTTGTCTGCAACCTACACCACAGCTCACGGCAACGCTGG
ATCCTTAACCCACTGAGGAAGACCAGGGATTAAACCTGTGTCCTCATGGATACTAGTCAG
ATTCATTTCTGCTGAGCCACGAGGGGAACTCCTAGAGCATTACCTTGGAGTGAAATTTAT
AGTTTAACTTCTTTTGTTATAAAGGAGGATCTGTAAATCTGAGTGGAAATTTCCTATAGG
TATGTGTTTATTTATTTGATGTGTCACAAAAATCATGGTAGTAAGTCACATTGCTATTTT
AATGCCCTGCTTTTATAAATATTAAATATTTCATATTCTGAAAAGGTTTCTTTCATTTTG
TTAATGTTAGTTTGGATGTTAGTTTGTCATAACTAAACTGTTATTTTATCTCTTGTTTAG
TGCTATTTTTTAACTTTGTTAACATCTATCTCTTGTTCATCTACAATGACTTAATTTTAT
AGGAGATGTAGCTTCTGTGTAAAGGCTAATTTTATCTTCATTGTGTTAGAGAATCATGTC
AGTCAGCTAAATTATCCTATTCTATATCCTAAAAACTCTTGGAAAAAGAAACTTAATCAG
TGTATTACTTACAAAGTAGAAGGACTTGTTCACACCTGTGTTTAATCTGATTCATGTAAA
GAGGATGTGAAGAATTTGTAATTTGTAAATCTTAAAGGAGATGTGATTATAGTTCTTTGT
TTTTTTTGACTTTTCCTCCTGAACACTTAGTCTTAGCAAGTGATCAACATGATGGTTTAA
AAGCCTAATTGTTGGTAAATGATTGAGGCACAGATAGAAATATGAATATCCACTGTTTAC
CACCATGTTCTTTGAATTATAAGTGACCATGTATATACTATCTTGCTTGAAGAAGTCTTT
GACAAAAAAGCAATATCTGTCGTAAATTTTCTTGTTCTAAAGAAAGCAGTTATATTCTAT
AGATATGAATTATGTAAATAAAAGTTATTTTATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGCAACACAAATCCAAGCTTTGTCTGCAACCTACACCACAGCTCACGGCAACGCTGG
ATCCTTAACCCACTGAGGAAGACCAGGGATTAAACCTGTGTCCTCATGGATACTAGTCAG
ATTCATTTCTGCTGAGCCACGAGGGGAACTCCTAGAGCATTACCTTGGAGTGAAATTTAT
AGTTTAACTTCTTTTGTTATAAAGGAGGATCTGTAAATCTGAGTGGAAATTTCCTATAGG
TATGTGTTTATTTATTTGATGTGTCACAAAAATCATGGTAGTAAGTCACATTGCTATTTT
AATGCCCTGCTTTTATAAATATTAAATATTTCATATTCTGAAAAGGTTTCTTTCATTTTG
TTAATGTTAGTTTGGATGTTAGTTTGTCATAACTAAACTGTTATTTTATCTCTTGTTTAG
TGCTATTTTTTAACTTTGTTAACATCTATCTCTTGTTCATCTACAATGACTTAATTTTAT
AGGAGATGTAGCTTCTGTGTAAAGGCTAATTTTATCTTCATTGTGTTAGAGAATCATGTC
AGTCAGCTAAATTATCCTATTCTATATCCTAAAAACTCTTGGAAAAAGAAACTTAATCAG
TGTATTACTTACAAAGTAGAAGGACTTGTTCACACCTGTGTTTAATCTGATTCATGTAAA
GAGGATGTGAAGAATTTGTAATTTGTAAATCTTAAAGGAGATGTGATTATAGTTCTTTGT
TTTTTTTGACTTTTCCTCCTGAACACTTAGTCTTAGCAAGTGATCAACATGATGGTTTAA
AAGCCTAATTGTTGGTAAATGATTGAGGCACAGATAGAAATATGAATATCCACTGTTTAC
CACCATGTTCTTTGAATTATAAGTGACCATGTATATACTATCTTGCTTGAAGAAGTCTTT
GACAAAAAAGCAATATCTGTCGTAAATTTTCTTGTTCTAAAGAAAGCAGTTATATTCTAT
AGATATGAATTATGTAAATAAAAGTTATTTTATACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               158-994, gnl|bosTau2|chr20 (4766520-4767362)
               

               
               158-994, gnl|Hg17|chr5 (70898571-70899400)
               

               
               158-994, gnl|Mm7|chr13 (97091447-97090683)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-994, gnl|bosTau2|chr20 (4766520-4767362)
               

               
               158-994, gnl|Hg17|chr5 (70898571-70899400)
               

               
               158-994, gnl|Mm7|chr13 (97091447-97090683)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ret (0.7724)
               

               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               tra (0.369276)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               kid (0.259471)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)

	158-994, gnl\|bosTau2\|chr20 (4766520-4767362)
	158-994, gnl\|Hg17\|chr5 (70898571-70899400)
	158-994, gnl\|Mm7\|chr13 (97091447-97090683)

	ret (0.7724)
	tra (0.369276)
	liv (0.292569)
	spl (0.286369)
	kid (0.259471)
	fli (0.202881)
	sag (0.182715)
	mga (0.160205)
	fat (0.147427)
	lnt (0.142308)