Ss1.1-Pig4-TMW8051A14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTTGCCCACCGCGCGCACGCAGCAACATGCACGTGAACGGCAAAGTGGCGCTGGTGAC CGGCGCGGCGCAGGGCATCGGCCGAGCCTCTGCGGAGGCGCTGCTGCTCAAGGGCGCCAA GGTAAGCAGCGCGCGGCGCGAGAACCTCTCCTGCCCACCCGAGACCCGCCCGCCAGACGG GCCGCCAGGAGCGGGGACCGAGGCTGCGCCCCCAGCGCCTGCCGTGCCGCCTGCACAGCT GCCCCGGCTGGCGCGCTCGAGCGGACCTCGAACGCGCTAAGAGAGAACCCGAACTTGAAC CCACCGCGCGCACGCAGCAACATGCACGTGAACGGCAAAGTGGCGCTGGTGACCGGCGCG GCGCAGGGCATCGGCCGAGCCTCTGCGGAGGCGCTGCTGCTCAAGGGCGCCAAGGTAGCG CTTGTCGACTGGAATTTTGAAGCAGGTGTAAAGTGTAAAGCTGCCCTGGATGAGCAGTTT GAACCTCAGAAGACTCTTTTCATCCAGTGCGATGTGGCGGACCAGGCACAACTTAGAGAT ACATTTAGGAAAGTTGTAGATCACTTTGGAAGACTGGACATTTTGGTCAATAATGCTGGA GTGAATAATGAGAAAAATTGGGAAAAAACGCTGCAGATTAACTTGGTTTCTGTAATCAGT GGAACGTACCTGGGTTTGGATTACATGAGTAAGCAAAATGGAGGTGAAGGCGGCATCATT ATCAACATGTCCTCTTTAGCAGGGCTCATGCCTGTTGCACAACAGCCTGTTTATTGTGCT TCAAAACACGGCATAATTGGGTTCACGCGCTCAGCGGCGATGGCTGCTAATCTCATGAAC AGTGGTGTGAGACTGAATGCCATTTGCCCAGGCTTTGTTAATACACCCATCCTCAAGTCC ATTGAAAAAGAAGAAAATATGGGACAATACATAGAGTACACGGACCATATCAAGGATATG ATGAAATACTATGGAGTTTTGGACCCATCAATGATCGCCAATGGATTAATAACACTCATT GAAGATGATGCTTTAAATGGCGCTATTATGAAGATCACAACTTCTAAAGGAATTCATTTT CAGGATTATGATACAACCCCATTTCACACAAAAACTCAATGAACATCTTCTGTGTCAGCC TTAATGAAGATAAGAACAAATGACATATTCAGACCATGTCTTCATTTGAATGTAGCTTTT TAAAATGAAATGTTATCATTTGAAGCTTCCCTTCATGCATTTGATGTTAATTTTTTTTCT AAACAATTAATTAAGTATATAGATTTAAAAAACTTAGAAACTATCAAAAATATGACCTGG ACCAAAGCTAGGTTTTGATCTTTATAGTCTGCACAATGATTAAAACAAAGGATATTCCAG GAATATTCTGCCTTTCAGAAAATATATGTAAATTTGTGATTCACAAATGTTAATGTTTTT CAGAGCATCATATTAAAGGAGATACTTGAATTGTTATTTAACTCAACCAGGTGTAAAAAA ACTCATTTTGTTTCTATGTTCTCACTTTAAAAGAAAGAAGCTACCTACAACGGCAAATAT TTCATAACAATAACTTAAATACCATCTTTCAGCTGAATATTTCAGCCCTTGAAAGATGTA GCACCTTTGGGGGGCCAATAGGTAAAGAATAAACTACAGTGTGAATATATCCCAAATGAA AAACCTAATGTATGGAAAAGTGACAGAAATTAACTGGCTGAGATGTTGATCCACAGCTCA GCCTCCCATCTGGTGAAAACATTTCTTTCTTCTTTGCTAACTTTAAGAATTTTAACTCGA AAAATCTCAGGAATGAAGCTTCTAATAGTTATAGCAAAAAGGGTAGTTAGTGCTCCTAAA ATATCATATTAGGACATGCATGTTAAGAAATAAATACAAATGTAATTTTTTTCAGGTTAC TTTTTTGTTGATTTGTGCCAATTTCAAAAGTGCCTACTTTTCTATAATTTTTTTCCCTAA TCTCCAGGAGTTATTTAGTGTTCTATGTATAGCTGTTGAGGAGAAGAAAACAGTTTTGTC ATATCCTCTACTGTAGATGTTTCTTTGTGCTCAAACCCATAATAAAAAGTGGTAAAAATA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTTGCCCACCGCGCGCACGCAGCAACATGCACGTGAACGGCAAAGTGGCGCTGGTGAC CGGCGCGGCGCAGGGCATCGGCCGAGCCTCTGCGGAGGCGCTGCTGCTCAAGGGCGCCAA GGTAAGCAGCGCGCGGCGCGAGAACCTCTCCTGCCCACCCGAGACCCGCCCGCCAGACGG GCCGCCAGGAGCGGGGACCGAGGCTGCGCCCCCAGCGCCTGCCGTGCCGCCTGCACAGCT GCCCCGGCTGGCGCGCTCGAGCGGACCTCGAACGCGCTAAGAGAGAACCCGAACTTGAAC CCACCGCGCGCACGCAGCAACATGCACGTGAACGGCAAAGTGGCGCTGGTGACCGGCGCG GCGCAGGGCATCGGCCGAGCCTCTGCGGAGGCGCTGCTGCTCAAGGGCGCCAAGGTAGCG CTTGTCGACTGGAATTTTGAAGCAGGTGTAAAGTGTAAAGCTGCCCTGGATGAGCAGTTT GAACCTCAGAAGACTCTTTTCATCCAGTGCGATGTGGCGGACCAGGCACAACTTAGAGAT ACATTTAGGAAAGTTGTAGATCACTTTGGAAGACTGGACATTTTGGTCAATAATGCTGGA GTGAATAATGAGAAAAATTGGGAAAAAACGCTGCAGATTAACTTGGTTTCTGTAATCAGT GGAACGTACCTGGGTTTGGATTACATGAGTAAGCAAAATGGAGGTGAAGGCGGCATCATT ATCAACATGTCCTCTTTAGCAGGGCTCATGCCTGTTGCACAACAGCCTGTTTATTGTGCT TCAAAACACGGCATAATTGGGTTCACGCGCTCAGCGGCGATGGCTGCTAATCTCATGAAC AGTGGTGTGAGACTGAATGCCATTTGCCCAGGCTTTGTTAATACACCCATCCTCAAGTCC ATTGAAAAAGAAGAAAATATGGGACAATACATAGAGTACACGGACCATATCAAGGATATG ATGAAATACTATGGAGTTTTGGACCCATCAATGATCGCCAATGGATTAATAACACTCATT GAAGATGATGCTTTAAATGGCGCTATTATGAAGATCACAACTTCTAAAGGAATTCATTTT CAGGATTATGATACAACCCCATTTCACACAAAAACTCAATGAACATCTTCTGTGTCAGCC TTAATGAAGATAAGAACAAATGACATATTCAGACCATGTCTTCATTTGAATGTAGCTTTT TAAAATGAAATGTTATCATTTGAAGCTTCCCTTCATGCATTTGATGTTAATTTTTTTTCT AAACAATTAATTAAGTATATAGATTTAAAAAACTTAGAAACTATCAAAAATATGACCTGG ACCAAAGCTAGGTTTTGATCTTTATAGTCTGCACAATGATTAAAACAAAGGATATTCCAG GAATATTCTGCCTTTCAGAAAATATATGTAAATTTGTGATTCACAAATGTTAATGTTTTT CAGAGCATCATATTAAAGGAGATACTTGAATTGTTATTTAACTCAACCAGGTGTAAAAAA ACTCATTTTGTTTCTATGTTCTCACTTTAAAAGAAAGAAGCTACCTACAACGGCAAATAT TTCATAACAATAACTTAAATACCATCTTTCAGCTGAATATTTCAGCCCTTGAAAGATGTA GCACCTTTGGGGGGCCAATAGGTAAAGAATAAACTACAGTGTGAATATATCCCAAATGAA AAACCTAATGTATGGAAAAGTGACAGAAATTAACTGGCTGAGATGTTGATCCACAGCTCA GCCTCCCATCTGGTGAAAACATTTCTTTCTTCTTTGCTAACTTTAAGAATTTTAACTCGA AAAATCTCAGGAATGAAGCTTCTAATAGTTATAGCAAAAAGGGTAGTTAGTGCTCCTAAA ATATCATATTAGGACATGCATGTTAAGAAATAAATACAAATGTAATTTTTTTCAGGTTAC TTTTTTGTTGATTTGTGCCAATTTCAAAAGTGCCTACTTTTCTATAATTTTTTTCCCTAA TCTCCAGGAGTTATTTAGTGTTCTATGTATAGCTGTTGAGGAGAAGAAAACAGTTTTGTC ATATCCTCTACTGTAGATGTTTCTTTGTGCTCAAACCCATAATAAAAAGTGGTAAAAATA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 641-743, gnl|bosTau2|chr8 (4623764-4623866) | |
| 641-743, gnl|canFam2|chr25 (27965771-27965879) | |
| 641-743, gnl|danRer3|chr1 (37509297-37509194) | |
| 641-743, gnl|dasNov1|scaffold_4429 (50274-50382) | |
| 641-743, gnl|echTel1|scaffold_300599 (17003-17111) | |
| 641-743, gnl|fr1|chrUn (44295617-44295725) | |
| 641-743, gnl|hg17|chr4 (175804568-175804676) | |
| 641-743, gnl|Hg17|chr4 (175804678-175804576) | |
| 641-743, gnl|loxAfr1|scaffold_22620 (7438-7330) | |
| 641-743, gnl|mm7|chr8 (54708437-54708329) | |
| 641-743, gnl|Mm7|chr8 (54708325-54708427) | |
| 641-743, gnl|monDom2|scaffold_9 (52808058-52808166) | |
| 641-743, gnl|oryCun1|scaffold_203149 (103311-103419) | |
| 641-743, gnl|panTro1|chr3 (193792400-193792508) | |
| 641-743, gnl|rheMac2|chr5 (166578188-166578296) | |
| 641-743, gnl|rn3|chr16 (37436579-37436686) | |
| 641-743, gnl|tetNig1|chr18 (1525941-1526044) | |
| 819-983, gnl|bosTau2|chr8 (4641697-4641861) | |
| 819-983, gnl|Hg17|chr4 (175789196-175789032) | |
| 819-983, gnl|Mm7|chr8 (54719729-54719893) | |
| 984-2100, gnl|bosTau2|chr8 (4643851-4644951) | |
| 984-2100, gnl|Hg17|chr4 (175787975-175786836) | |
| 984-2100, gnl|Mm7|chr8 (54720795-54722028) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 641-743, gnl|bosTau2|chr8 (4623764-4623866) | |
| 641-743, gnl|canFam2|chr25 (27965771-27965879) | |
| 641-743, gnl|danRer3|chr1 (37509297-37509194) | |
| 641-743, gnl|dasNov1|scaffold_4429 (50274-50382) | |
| 641-743, gnl|echTel1|scaffold_300599 (17003-17111) | |
| 641-743, gnl|fr1|chrUn (44295617-44295725) | |
| 641-743, gnl|hg17|chr4 (175804568-175804676) | |
| 641-743, gnl|Hg17|chr4 (175804678-175804576) | |
| 641-743, gnl|loxAfr1|scaffold_22620 (7438-7330) | |
| 641-743, gnl|mm7|chr8 (54708437-54708329) | |
| 641-743, gnl|Mm7|chr8 (54708325-54708427) | |
| 641-743, gnl|monDom2|scaffold_9 (52808058-52808166) | |
| 641-743, gnl|oryCun1|scaffold_203149 (103311-103419) | |
| 641-743, gnl|panTro1|chr3 (193792400-193792508) | |
| 641-743, gnl|rheMac2|chr5 (166578188-166578296) | |
| 641-743, gnl|rn3|chr16 (37436579-37436686) | |
| 641-743, gnl|tetNig1|chr18 (1525941-1526044) | |
| 819-983, gnl|bosTau2|chr8 (4641697-4641861) | |
| 819-983, gnl|Hg17|chr4 (175789196-175789032) | |
| 819-983, gnl|Mm7|chr8 (54719729-54719893) | |
| 984-2100, gnl|bosTau2|chr8 (4643851-4644951) | |
| 984-2100, gnl|Hg17|chr4 (175787975-175786836) | |
| 984-2100, gnl|Mm7|chr8 (54720795-54722028) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| lin (2.62085) | |
| ute (1.32784) | |
| kid (1.03788) | |
| lun (0.902935) | |
| rec (0.865351) | |
| liv (0.731422) | |
| spl (0.572738) | |
| eye (0.511509) | |
| sin (0.349895) | |
| cut (0.339847) | |
| cty (0.31224) | |
| sme (0.305437) | |
| ret (0.257467) | |
| tra (0.246184) | |
| eru (0.240096) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| ill (0.175593) | |
| nco (0.161734) | |
| csp (0.161186) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| spc (0.113366) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (2.62085) | |
| ute (1.32784) | |
| kid (1.03788) | |
| lun (0.902935) | |
| rec (0.865351) | |
| liv (0.731422) | |
| spl (0.572738) | |
| eye (0.511509) | |
| sin (0.349895) | |
| cut (0.339847) | |
| cty (0.31224) | |
| sme (0.305437) | |
| ret (0.257467) | |
| tra (0.246184) | |
| eru (0.240096) | |
| pan (0.23596) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| ill (0.175593) | |
| nco (0.161734) | |
| csp (0.161186) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| spc (0.113366) |