Non-Coding RNA Search

Ss1.1-Pig4-TMW8051B11.3

Sequence:


               
               ATGGCAAACTGTGGTCAAAAAATGGCTTTCAATTAAAGTTTTGACTTTCTTAGTATAAAT
AATATAAAGAATGTCTAAGTAATTAGAAATCCTTCAAAAAAAAAAAGTAGAGCAAATGTG
GCAAATAGGAATCATATTATACAAATTCCATTTCTTTTTATAAGAAAAACACAAACCATT
ATCATTTATTCATGAGCCAAAGCCATTAAGATAAATCAAGCTATCAGCTTCCTGTCTTGC
TGAAGTTTGGATCATTTTATAGATCCATGTAATAGAGAACTTCCTTCCTATGAAACAAAA
ACCTTGAGACCTAACTCATAAATATACTCTTAGTTTTCATTAAAAAATCTTTTTTGTCAC
TTTTAGCTCTAATCAGAGTCAAAAAGGTTATATATTGATTTGGGGAGAGCAAATTTCACA
GGAAGTAGACTTAATTGTATAACATTCCTGGAGACAACACAAGGGAAACAGTGTTTAAAT
GTAAAATAGACTGTGTGCTAGGTAATTTAATGCCCAAATGAATAAAAGATTTTTAAGTCA
AGATTATTGTTTCTAGTTTAGAAAAAAAAATCTACAATCTCAGTTTTAATAATCAGTTTT
ACATCCTTTTTTATTTCTAAAGAATAAACAGAAAGCACAAGAAGTTTTCCTTTTTTAATG
GCCTGCTGGATATGACCAGCAGTACAAGAGTCTGTCTATACTATTCTAACACATTAAAAT
ATTGGACATAAAATGGAGATAACTTTTGGAAATGGTTTGGCTTTTAAGTAGAACTGAAAA
CTAATGGATATAACCCAATGAAAAGGGAATCCTCTCTTCAAATAAAGCCAATCTTTGTGA
ATTACTTTTACATTTTGAATAGATTACTCAATCCTAAATCTTTCTTTACTCTTATTTCCT
AGCACATAAAATATAGATAATAATACTTGTCACTTGACTTCCTGAAGGTTAATTCTTCAG
TTAAGAGGTGACCATTGGAGCATACTTGAAAATAATTTCTGTCCAGCTGTTAAGTACTAA
TGTGATGATAGGTTTTCAAAGTATCCCCTTAGTGGACGCTGCAGATTCGCATTCACTTTT
AGTCTGTTAATAGGCTTTCTTGACTTGATTTGATAATAAAGATAATGGTACAATTTGAAT
TTATGGTTTAAACTCTGCAATTAGATGAACGGTTTCAATTTCCTCCTATCTTTAATAAGG
TTTGTGTAAAATTGATGTTTGCCTAAGTTATTTTAAAAGTTGATTACATTTACAGGAAGC
AAAGATAATCACTTTTGTTGTGGTTATAATTTAAGCTTTCAGACTCGAGAGTGTAAAACT
TAAGGAGATATACTTAAATTATGCTGAGTTTGCTAGAATTGGATAAATTTAGTATAAACC
AAGTATGAACTTGATAAACACCTGAACATACAGAGTTGAAGTAGTAACTTCACAAAGCTA
TTAGTACTCATCAGTCAGGCTTGTGTGATCCACCCCTTACCCAAAAAGAAGTAAATGTTT
CCATTTTTATTCTAATGCTGAAGTTGAATGTTTCTTGGATGTGAGTTCAAATAAATTGAT
CTGAATAAGTTTTCATTTCTTATTAAAACTTCATATATAAAATCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCAAACTGTGGTCAAAAAATGGCTTTCAATTAAAGTTTTGACTTTCTTAGTATAAAT
AATATAAAGAATGTCTAAGTAATTAGAAATCCTTCAAAAAAAAAAAGTAGAGCAAATGTG
GCAAATAGGAATCATATTATACAAATTCCATTTCTTTTTATAAGAAAAACACAAACCATT
ATCATTTATTCATGAGCCAAAGCCATTAAGATAAATCAAGCTATCAGCTTCCTGTCTTGC
TGAAGTTTGGATCATTTTATAGATCCATGTAATAGAGAACTTCCTTCCTATGAAACAAAA
ACCTTGAGACCTAACTCATAAATATACTCTTAGTTTTCATTAAAAAATCTTTTTTGTCAC
TTTTAGCTCTAATCAGAGTCAAAAAGGTTATATATTGATTTGGGGAGAGCAAATTTCACA
GGAAGTAGACTTAATTGTATAACATTCCTGGAGACAACACAAGGGAAACAGTGTTTAAAT
GTAAAATAGACTGTGTGCTAGGTAATTTAATGCCCAAATGAATAAAAGATTTTTAAGTCA
AGATTATTGTTTCTAGTTTAGAAAAAAAAATCTACAATCTCAGTTTTAATAATCAGTTTT
ACATCCTTTTTTATTTCTAAAGAATAAACAGAAAGCACAAGAAGTTTTCCTTTTTTAATG
GCCTGCTGGATATGACCAGCAGTACAAGAGTCTGTCTATACTATTCTAACACATTAAAAT
ATTGGACATAAAATGGAGATAACTTTTGGAAATGGTTTGGCTTTTAAGTAGAACTGAAAA
CTAATGGATATAACCCAATGAAAAGGGAATCCTCTCTTCAAATAAAGCCAATCTTTGTGA
ATTACTTTTACATTTTGAATAGATTACTCAATCCTAAATCTTTCTTTACTCTTATTTCCT
AGCACATAAAATATAGATAATAATACTTGTCACTTGACTTCCTGAAGGTTAATTCTTCAG
TTAAGAGGTGACCATTGGAGCATACTTGAAAATAATTTCTGTCCAGCTGTTAAGTACTAA
TGTGATGATAGGTTTTCAAAGTATCCCCTTAGTGGACGCTGCAGATTCGCATTCACTTTT
AGTCTGTTAATAGGCTTTCTTGACTTGATTTGATAATAAAGATAATGGTACAATTTGAAT
TTATGGTTTAAACTCTGCAATTAGATGAACGGTTTCAATTTCCTCCTATCTTTAATAAGG
TTTGTGTAAAATTGATGTTTGCCTAAGTTATTTTAAAAGTTGATTACATTTACAGGAAGC
AAAGATAATCACTTTTGTTGTGGTTATAATTTAAGCTTTCAGACTCGAGAGTGTAAAACT
TAAGGAGATATACTTAAATTATGCTGAGTTTGCTAGAATTGGATAAATTTAGTATAAACC
AAGTATGAACTTGATAAACACCTGAACATACAGAGTTGAAGTAGTAACTTCACAAAGCTA
TTAGTACTCATCAGTCAGGCTTGTGTGATCCACCCCTTACCCAAAAAGAAGTAAATGTTT
CCATTTTTATTCTAATGCTGAAGTTGAATGTTTCTTGGATGTGAGTTCAAATAAATTGAT
CTGAATAAGTTTTCATTTCTTATTAAAACTTCATATATAAAATCCAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1608, gnl|bosTau2|chr10 (45573587-45572016)
               

               
               1-1608, gnl|Hg17|chr14 (54584088-54585960)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1608, gnl|bosTau2|chr10 (45573587-45572016)
               

               
               1-1608, gnl|Hg17|chr14 (54584088-54585960)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               ret (0.514933)
               

               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               nlu (0.191681)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	1-1608, gnl\|bosTau2\|chr10 (45573587-45572016)
	1-1608, gnl\|Hg17\|chr14 (54584088-54585960)

	ret (0.514933)
	pro (0.512033)
	liv (0.292569)
	nlu (0.191681)
	rec (0.17307)
	eye (0.170503)
	fco (0.157208)
	lin (0.145603)
	nmm (0.132802)
	thg (0.126791)
	cbl (0.114797)
	jej (0.0989218)