Ss1.1-Pig4-TMW8051B14.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCTGTCTTCCTGTTCCAAACCACGTGGACGCGCCGGGGGCTGCGGGGGCTGCGGGAG GGAACCTGGGCCGCCACAGCAGCTGTCGGCGCCACCCCAAGAGTCAAGACCCTCGCGCCC GTCCAAAGTCGCCTCGCCCCGGCCGCCCGCTCCTTTGCGGAGAGCGTGCACATGGCGACC CAGGCGCACTCCCTCAGCTACACGGGCTGCAACTTCTTGCGCCAGCGTCTGGTCCTGTCC ACTTTGAGCGGGCGCCCCGTCAAAATCCGAAAGATTCGGGCCAGAGACGACAACCCAGGC CTTCGAGATTTTGAAGCTAGCTTCATAAGGCTATTGGACAAAATAACTAATGGTTCTCGA ATTGAAATAAATCAAACAGGAACAACCTTATATTATCAGCCTGGCCTCCTGTATGGCGGG TCCGTGGAACATGACTGCAGCATCCTTCGAAGCATTGGCTATTATCTGGAAAGTCTTCTT TGTCTGGCTCCATTTATGAAGCACCCGCTTAGAATAGTTCTGCGAGGAGTGACCAATGAC CAGGTTGACCCTTCGGTTGATGTTCTTAAGGTGACAGCCCTCCCTCTGTTGAAACAATTT GGAATTGATGGTGAATCATTTGAGCTAAAGATTGTGCGACGGGGAATGCCTCCTGGAGGA GGAGGTGAAGTGTTGTTCTCATGTCCTGTGAGGAAGGTGCTGAAACCCATTCAGCTCACA GATCCAGGAAAGATCAAACGTATCAGAGGAATGGCGTACTCAGTTCGCGTCTCACCTCAG ATGGCAAACCGGATTGTGGATTCTGCCAGGAGCATCCTCAACAAGTTTATACCTGATATC TATATTTACACAGACCACATGAAAGGAGTCAACTCTGGAAAGTCTCCGGGCTTTGGGCTG TCCCTGGTTGCTGAGACCACCAACGGCACCTTCCTCAGTGCTGAACTGGCCTCCAACCCC CAGGGCCAGGGAGCAGCGGTGCTTCCTGAGGATCTGGGCAGGAACTGTGCCAGGCTGCTG CTCGAAGAAATCTATAGGGGTGGATGTGTGGACTCGACCAACCAAAGTCTGGCTCTATTG CTTATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTTGGACCACTCTCTCCCTAC ACGATAGAATTTTTGCGGCATTTGAAGAGCTTTTTCCAGATTATGTTTAAAATTGAAACC AAGCCGTGTGGTGAAGAACTCAAGGGAGGGGATAAAGTGCTGATGACCTGTGTTGGCATT GGCTTCTCCAACCTCAGCAAGACCCTCAAGTGACACTGTCTCAAGATGAAAGCCCCAAGA CTTCTGGAGAAGACAGAACCTGCCAAGGAACCAAAGGGACCAGATTCATCCAGGACAGGA TGGCCTCATACATTAAGGACTTTCTTAATTTTCTATTTAAAAACAATCAGGATATCCGAA TAAAAGACATCTCACTCTTGTGGTTTCCAGACATTTCTCGAAGCAGGCATTCCTCAGGAG GGCCAGTCATGATGGGAGCTCCCTTGCCTTACCTGGCTGAAGAGTGTGCCTCAGGACACA GTCATGCTGCTGGAACAGCATTACAACTGCATTTCAGCAGTGCTTCCTCAGCCCACATCC CTGGGCTTCTGCTGTACAGCAGTTTTCCAGACTGTGGAGTTTGTTATTATTGCTTCTACA AGGACTGACCTCTCTGAGCCTTGATTTCTGTGTAGGGAATAAATGAGACAATATGGGTGG AAGCACTTTATGAGGAGTGCATTGTTATGCAAATGTTGGGAATTGGTGTTTTAGAGTCTT TTCTCCCTTGTCTTCTGAATGGACTGCTATCTTGGAGACAGATATGTCTCCCAATTGTGT TCATTTTGTGTGAATTTTGTGGGGATGTGTGCCTTGGGAGAGCAAGGGTCCATTTAAAGA TAATGAATATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCTGTCTTCCTGTTCCAAACCACGTGGACGCGCCGGGGGCTGCGGGGGCTGCGGGAG GGAACCTGGGCCGCCACAGCAGCTGTCGGCGCCACCCCAAGAGTCAAGACCCTCGCGCCC GTCCAAAGTCGCCTCGCCCCGGCCGCCCGCTCCTTTGCGGAGAGCGTGCACATGGCGACC CAGGCGCACTCCCTCAGCTACACGGGCTGCAACTTCTTGCGCCAGCGTCTGGTCCTGTCC ACTTTGAGCGGGCGCCCCGTCAAAATCCGAAAGATTCGGGCCAGAGACGACAACCCAGGC CTTCGAGATTTTGAAGCTAGCTTCATAAGGCTATTGGACAAAATAACTAATGGTTCTCGA ATTGAAATAAATCAAACAGGAACAACCTTATATTATCAGCCTGGCCTCCTGTATGGCGGG TCCGTGGAACATGACTGCAGCATCCTTCGAAGCATTGGCTATTATCTGGAAAGTCTTCTT TGTCTGGCTCCATTTATGAAGCACCCGCTTAGAATAGTTCTGCGAGGAGTGACCAATGAC CAGGTTGACCCTTCGGTTGATGTTCTTAAGGTGACAGCCCTCCCTCTGTTGAAACAATTT GGAATTGATGGTGAATCATTTGAGCTAAAGATTGTGCGACGGGGAATGCCTCCTGGAGGA GGAGGTGAAGTGTTGTTCTCATGTCCTGTGAGGAAGGTGCTGAAACCCATTCAGCTCACA GATCCAGGAAAGATCAAACGTATCAGAGGAATGGCGTACTCAGTTCGCGTCTCACCTCAG ATGGCAAACCGGATTGTGGATTCTGCCAGGAGCATCCTCAACAAGTTTATACCTGATATC TATATTTACACAGACCACATGAAAGGAGTCAACTCTGGAAAGTCTCCGGGCTTTGGGCTG TCCCTGGTTGCTGAGACCACCAACGGCACCTTCCTCAGTGCTGAACTGGCCTCCAACCCC CAGGGCCAGGGAGCAGCGGTGCTTCCTGAGGATCTGGGCAGGAACTGTGCCAGGCTGCTG CTCGAAGAAATCTATAGGGGTGGATGTGTGGACTCGACCAACCAAAGTCTGGCTCTATTG CTTATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTTGGACCACTCTCTCCCTAC ACGATAGAATTTTTGCGGCATTTGAAGAGCTTTTTCCAGATTATGTTTAAAATTGAAACC AAGCCGTGTGGTGAAGAACTCAAGGGAGGGGATAAAGTGCTGATGACCTGTGTTGGCATT GGCTTCTCCAACCTCAGCAAGACCCTCAAGTGACACTGTCTCAAGATGAAAGCCCCAAGA CTTCTGGAGAAGACAGAACCTGCCAAGGAACCAAAGGGACCAGATTCATCCAGGACAGGA TGGCCTCATACATTAAGGACTTTCTTAATTTTCTATTTAAAAACAATCAGGATATCCGAA TAAAAGACATCTCACTCTTGTGGTTTCCAGACATTTCTCGAAGCAGGCATTCCTCAGGAG GGCCAGTCATGATGGGAGCTCCCTTGCCTTACCTGGCTGAAGAGTGTGCCTCAGGACACA GTCATGCTGCTGGAACAGCATTACAACTGCATTTCAGCAGTGCTTCCTCAGCCCACATCC CTGGGCTTCTGCTGTACAGCAGTTTTCCAGACTGTGGAGTTTGTTATTATTGCTTCTACA AGGACTGACCTCTCTGAGCCTTGATTTCTGTGTAGGGAATAAATGAGACAATATGGGTGG AAGCACTTTATGAGGAGTGCATTGTTATGCAAATGTTGGGAATTGGTGTTTTAGAGTCTT TTCTCCCTTGTCTTCTGAATGGACTGCTATCTTGGAGACAGATATGTCTCCCAATTGTGT TCATTTTGTGTGAATTTTGTGGGGATGTGTGCCTTGGGAGAGCAAGGGTCCATTTAAAGA TAATGAATATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 625-1675, + strand, RNAz p=0.998924 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 625-1675, + strand, RNAz p=0.998924 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 119-307, gnl|bosTau2|chr8 (18519762-18519575) | |
| 378-557, gnl|bosTau2|chr8 (18495338-18495159) | |
| 378-557, gnl|canFam2|chr1 (96229964-96230177) | |
| 378-557, gnl|danRer3|chrNA (236340542-236340724) | |
| 378-557, gnl|dasNov1|scaffold_78674 (6136-6349) | |
| 378-557, gnl|fr1|chrUn (248928571-248928368) | |
| 378-557, gnl|galGal2|chrZ (11627205-11627407) | |
| 378-557, gnl|hg17|chr9 (4816827-4817040) | |
| 378-557, gnl|Hg17|chr9 (4816856-4817035) | |
| 378-557, gnl|loxAfr1|scaffold_29520 (7394-7183) | |
| 378-557, gnl|mm7|chr19 (28818018-28818245) | |
| 378-557, gnl|Mm7|chr19 (28818061-28818240) | |
| 378-557, gnl|monDom2|scaffold_5 (111769902-111769690) | |
| 378-557, gnl|oryCun1|scaffold_129439 (8328-8541) | |
| 378-557, gnl|panTro1|chr11 (4819037-4819250) | |
| 378-557, gnl|rheMac2|chr15 (72390124-72389911) | |
| 378-557, gnl|rn3|chr1 (232927207-232927431) | |
| 378-557, gnl|tetNig1|chr4 (847601-847787) | |
| 378-557, gnl|xenTro1|scaffold_52 (2224759-2224560) | |
| 625-758, gnl|bosTau2|chr8 (18488623-18488490) | |
| 625-758, gnl|Hg17|chr9 (4824135-4824268) | |
| 625-758, gnl|Mm7|chr19 (28821599-28821731) | |
| 882-1039, gnl|bosTau2|chr8 (18470576-18470419) | |
| 882-1039, gnl|canFam2|chr1 (96254497-96254678) | |
| 882-1039, gnl|dasNov1|scaffold_223759 (1099-1276) | |
| 882-1039, gnl|echTel1|scaffold_307516 (14637-14816) | |
| 882-1039, gnl|fr1|chrUn (248926744-248926579) | |
| 882-1039, gnl|galGal2|chrZ (11643094-11643268) | |
| 882-1039, gnl|hg17|chr9 (4834507-4834688) | |
| 882-1039, gnl|Hg17|chr9 (4834525-4834682) | |
| 882-1039, gnl|loxAfr1|scaffold_124976 (604-785) | |
| 882-1039, gnl|mm7|chr19 (28830472-28830651) | |
| 882-1039, gnl|Mm7|chr19 (28830488-28830645) | |
| 882-1039, gnl|monDom2|scaffold_5 (111745786-111745609) | |
| 882-1039, gnl|oryCun1|scaffold_156341 (15830-15650) | |
| 882-1039, gnl|panTro1|chr11 (4837642-4837823) | |
| 882-1039, gnl|rheMac2|chr15 (72372523-72372342) | |
| 882-1039, gnl|rn3|chr1 (232939012-232939191) | |
| 882-1039, gnl|tetNig1|chr4 (849313-849481) | |
| 882-1039, gnl|xenTro1|scaffold_52 (2220319-2220133) | |
| 1143-1376, gnl|bosTau2|chr8 (18455491-18455257) | |
| 1143-1376, gnl|Hg17|chr9 (4850125-4850380) | |
| 1143-1376, gnl|Mm7|chr19 (28842980-28843221) | |
| 1388-1932, gnl|bosTau2|chr8 (18455269-18454726) | |
| 1388-1932, gnl|Hg17|chr9 (4850357-4850919) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-307, gnl|bosTau2|chr8 (18519762-18519575) | |
| 378-557, gnl|bosTau2|chr8 (18495338-18495159) | |
| 378-557, gnl|canFam2|chr1 (96229964-96230177) | |
| 378-557, gnl|danRer3|chrNA (236340542-236340724) | |
| 378-557, gnl|dasNov1|scaffold_78674 (6136-6349) | |
| 378-557, gnl|fr1|chrUn (248928571-248928368) | |
| 378-557, gnl|galGal2|chrZ (11627205-11627407) | |
| 378-557, gnl|hg17|chr9 (4816827-4817040) | |
| 378-557, gnl|Hg17|chr9 (4816856-4817035) | |
| 378-557, gnl|loxAfr1|scaffold_29520 (7394-7183) | |
| 378-557, gnl|mm7|chr19 (28818018-28818245) | |
| 378-557, gnl|Mm7|chr19 (28818061-28818240) | |
| 378-557, gnl|monDom2|scaffold_5 (111769902-111769690) | |
| 378-557, gnl|oryCun1|scaffold_129439 (8328-8541) | |
| 378-557, gnl|panTro1|chr11 (4819037-4819250) | |
| 378-557, gnl|rheMac2|chr15 (72390124-72389911) | |
| 378-557, gnl|rn3|chr1 (232927207-232927431) | |
| 378-557, gnl|tetNig1|chr4 (847601-847787) | |
| 378-557, gnl|xenTro1|scaffold_52 (2224759-2224560) | |
| 625-758, gnl|bosTau2|chr8 (18488623-18488490) | |
| 625-758, gnl|Hg17|chr9 (4824135-4824268) | |
| 625-758, gnl|Mm7|chr19 (28821599-28821731) | |
| 882-1039, gnl|bosTau2|chr8 (18470576-18470419) | |
| 882-1039, gnl|canFam2|chr1 (96254497-96254678) | |
| 882-1039, gnl|dasNov1|scaffold_223759 (1099-1276) | |
| 882-1039, gnl|echTel1|scaffold_307516 (14637-14816) | |
| 882-1039, gnl|fr1|chrUn (248926744-248926579) | |
| 882-1039, gnl|galGal2|chrZ (11643094-11643268) | |
| 882-1039, gnl|hg17|chr9 (4834507-4834688) | |
| 882-1039, gnl|Hg17|chr9 (4834525-4834682) | |
| 882-1039, gnl|loxAfr1|scaffold_124976 (604-785) | |
| 882-1039, gnl|mm7|chr19 (28830472-28830651) | |
| 882-1039, gnl|Mm7|chr19 (28830488-28830645) | |
| 882-1039, gnl|monDom2|scaffold_5 (111745786-111745609) | |
| 882-1039, gnl|oryCun1|scaffold_156341 (15830-15650) | |
| 882-1039, gnl|panTro1|chr11 (4837642-4837823) | |
| 882-1039, gnl|rheMac2|chr15 (72372523-72372342) | |
| 882-1039, gnl|rn3|chr1 (232939012-232939191) | |
| 882-1039, gnl|tetNig1|chr4 (849313-849481) | |
| 882-1039, gnl|xenTro1|scaffold_52 (2220319-2220133) | |
| 1143-1376, gnl|bosTau2|chr8 (18455491-18455257) | |
| 1143-1376, gnl|Hg17|chr9 (4850125-4850380) | |
| 1143-1376, gnl|Mm7|chr19 (28842980-28843221) | |
| 1388-1932, gnl|bosTau2|chr8 (18455269-18454726) | |
| 1388-1932, gnl|Hg17|chr9 (4850357-4850919) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| lun (0.451467) | |
| cga (0.279096) | |
| bla (0.248694) | |
| duo (0.172801) | |
| cut (0.169924) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| eep (0.122564) | |
| ecc (0.115035) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.451467) | |
| cga (0.279096) | |
| bla (0.248694) | |
| duo (0.172801) | |
| cut (0.169924) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| eep (0.122564) | |
| ecc (0.115035) |