Ss1.1-Pig4-TMW8051B23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCCCAGCCCCACATCCTGCATCTCTGACTGCCCCTCAGCGTAACCTTCCCTTTCACG CTGGGAGACCCGGCCCTGGGGAGGGGAGCAGCAGGGGCCAAGAGGCTTTTCCAATGCGTG TCAATCCTTGGAAATAAACACCTCCTGCATCCCACCCGGTGGCCCACCAGATAAATAAGG CCTTTATATACAGAGAAGCATGACAGAGTGGGAGCGGGTGGGCTGGTGGCAGCAGCAGTG GTCTGGGCAGGGGGGCTGGGCCGGCAGGGCCCTGTCAGTGGGAGAAGATGCCCCGGAAGC GGGCCTTGTCCTCCTCGTCCTTCTGCCGGATCCGCGCCTCGAGAGCCCGCAGCTCGCGAC TCACGATGGGCGCCAGGGCCGGGTCCAGCTCCAGCACCTTGGCAAAGTCAGCCTGGGCCT CCTGGGCATTCCACACTGCCGCGTGGGCCTTGCCCCGCTTGAAGTAGGCCTTGACGTTGT CATCATACTTATTGAGGATGGAGGAGCAGTGGTCCAGCACTTCGTAATATTCTTCGGCCA CCAGCTTACACTGACAGTAGTTGAGCAGCAGTGGCGTGATCTGCTGATCCAGCTGAATCC AGTCAGGGGACCCAGGCTGTTCCTTCATTTGAAGGTTCTTGAGGCAGGCGATGGCGTCGT AGTACTTGGCGGCGGCCTCCTTCACGTGGCCCTCGCGGTACAACCGGTTGCCCTCCTGGT GGATGACTGGCACTGCCTTTACCTTCTCCTCGTCCGTCATGGCCCACGGGTCCTGCTGGT ACGTGCCAGGGTTCTCCACCTTTAGCATCTCGATGTCGAAGATGAGAGGCTGGGGCTTCT GCTGCAGAGCGTCCAGGTCGGCGTGGCCCAGGGAACTGTGCTCGTGCATCTGCGCGATGC CGCAGCAGTGCCGCTGGCCCTCCAGGGGGTCCTTGCCCGCGGCGATGTTCCGCAGACTCT TGGCCACCAGCGGATACAGGACCACATGCTTGACGTCGCAGCGGAACTGGGCGATCTCCC CCTCCCGCATGGTGCACACGATGGTCTCCCACACGGGCAGCTTGAACTTCTTGCCCATGA TGAGCTCCATGGGCTTGCCGCGCAGCCGGCTGTCGTCCAGCACGGCGCCCTCCTCGTCAC TGCGCAGAGTCCGGTAATGGAACGTGGCCTTGGTTCCATCCTTAAAGTCAGGGAGCTCTC CTCGGCCCTCCTGTATCACACGCTTTTGGATCCCGTCCTCCCGGAGTCTTGCGATGATAT CCGCCATCCTCCTTCCCCGCTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCCCAGCCCCACATCCTGCATCTCTGACTGCCCCTCAGCGTAACCTTCCCTTTCACG CTGGGAGACCCGGCCCTGGGGAGGGGAGCAGCAGGGGCCAAGAGGCTTTTCCAATGCGTG TCAATCCTTGGAAATAAACACCTCCTGCATCCCACCCGGTGGCCCACCAGATAAATAAGG CCTTTATATACAGAGAAGCATGACAGAGTGGGAGCGGGTGGGCTGGTGGCAGCAGCAGTG GTCTGGGCAGGGGGGCTGGGCCGGCAGGGCCCTGTCAGTGGGAGAAGATGCCCCGGAAGC GGGCCTTGTCCTCCTCGTCCTTCTGCCGGATCCGCGCCTCGAGAGCCCGCAGCTCGCGAC TCACGATGGGCGCCAGGGCCGGGTCCAGCTCCAGCACCTTGGCAAAGTCAGCCTGGGCCT CCTGGGCATTCCACACTGCCGCGTGGGCCTTGCCCCGCTTGAAGTAGGCCTTGACGTTGT CATCATACTTATTGAGGATGGAGGAGCAGTGGTCCAGCACTTCGTAATATTCTTCGGCCA CCAGCTTACACTGACAGTAGTTGAGCAGCAGTGGCGTGATCTGCTGATCCAGCTGAATCC AGTCAGGGGACCCAGGCTGTTCCTTCATTTGAAGGTTCTTGAGGCAGGCGATGGCGTCGT AGTACTTGGCGGCGGCCTCCTTCACGTGGCCCTCGCGGTACAACCGGTTGCCCTCCTGGT GGATGACTGGCACTGCCTTTACCTTCTCCTCGTCCGTCATGGCCCACGGGTCCTGCTGGT ACGTGCCAGGGTTCTCCACCTTTAGCATCTCGATGTCGAAGATGAGAGGCTGGGGCTTCT GCTGCAGAGCGTCCAGGTCGGCGTGGCCCAGGGAACTGTGCTCGTGCATCTGCGCGATGC CGCAGCAGTGCCGCTGGCCCTCCAGGGGGTCCTTGCCCGCGGCGATGTTCCGCAGACTCT TGGCCACCAGCGGATACAGGACCACATGCTTGACGTCGCAGCGGAACTGGGCGATCTCCC CCTCCCGCATGGTGCACACGATGGTCTCCCACACGGGCAGCTTGAACTTCTTGCCCATGA TGAGCTCCATGGGCTTGCCGCGCAGCCGGCTGTCGTCCAGCACGGCGCCCTCCTCGTCAC TGCGCAGAGTCCGGTAATGGAACGTGGCCTTGGTTCCATCCTTAAAGTCAGGGAGCTCTC CTCGGCCCTCCTGTATCACACGCTTTTGGATCCCGTCCTCCCGGAGTCTTGCGATGATAT CCGCCATCCTCCTTCCCCGCTGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 168-481, gnl|bosTau2|chr29 (39689499-39689818) | |
| 168-481, gnl|Hg17|chr11 (67015147-67014834) | |
| 168-481, gnl|Mm7|chr19 (4009272-4009603) | |
| 611-801, gnl|bosTau2|chr29 (39690332-39690522) | |
| 611-801, gnl|Hg17|chr11 (67014273-67014083) | |
| 611-801, gnl|Mm7|chr19 (4010115-4010304) | |
| 989-1170, gnl|bosTau2|chr29 (39692263-39692444) | |
| 989-1170, gnl|canFam2|chr18 (53015657-53015446) | |
| 989-1170, gnl|canFam2|chr5 (33822735-33822533) | |
| 989-1170, gnl|danRer3|chr1 (41747612-41747401) | |
| 989-1170, gnl|danRer3|chr15 (31606065-31606276) | |
| 989-1170, gnl|dasNov1|scaffold_93052 (3235-3435) | |
| 989-1170, gnl|dasNov1|scaffold_93052 (3439-3231) | |
| 989-1170, gnl|echTel1|scaffold_188592 (724-922) | |
| 989-1170, gnl|echTel1|scaffold_248733 (6031-5823) | |
| 989-1170, gnl|fr1|chrUn (190738332-190738143) | |
| 989-1170, gnl|fr1|chrUn (145612482-145612679) | |
| 989-1170, gnl|galGal2|chr4 (1889554-1889370) | |
| 989-1170, gnl|galGal2|chr4 (1889367-1889558) | |
| 989-1170, gnl|hg17|chr11 (67011048-67011256) | |
| 989-1170, gnl|Hg17|chr11 (67011232-67011051) | |
| 989-1170, gnl|hg17|chr17 (6277934-6278147) | |
| 989-1170, gnl|loxAfr1|scaffold_65724 (10875-11082) | |
| 989-1170, gnl|loxAfr1|scaffold_65724 (11086-10878) | |
| 989-1170, gnl|mm7|chr11 (72118167-72118370) | |
| 989-1170, gnl|mm7|chr19 (4013079-4012881) | |
| 989-1170, gnl|Mm7|chr19 (4012893-4013074) | |
| 989-1170, gnl|monDom2|scaffold_107 (1584940-1584756) | |
| 989-1170, gnl|monDom2|scaffold_223 (151850-151643) | |
| 989-1170, gnl|oryCun1|scaffold_25944 (1376-1194) | |
| 989-1170, gnl|oryCun1|scaffold_75580 (417-596) | |
| 989-1170, gnl|panTro1|chr19 (6610405-6610618) | |
| 989-1170, gnl|panTro1|chr9 (68271502-68271710) | |
| 989-1170, gnl|rheMac2|chr14 (6969505-6969297) | |
| 989-1170, gnl|rheMac2|chr16 (6151890-6152102) | |
| 989-1170, gnl|rn3|chr1 (206855001-206854796) | |
| 989-1170, gnl|rn3|chr10 (58903216-58903428) | |
| 989-1170, gnl|tetNig1|chr10 (10050677-10050477) | |
| 989-1170, gnl|tetNig1|chr10 (10050475-10050658) | |
| 989-1170, gnl|xenTro1|scaffold_738 (608750-608942) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 168-481, gnl|bosTau2|chr29 (39689499-39689818) | |
| 168-481, gnl|Hg17|chr11 (67015147-67014834) | |
| 168-481, gnl|Mm7|chr19 (4009272-4009603) | |
| 611-801, gnl|bosTau2|chr29 (39690332-39690522) | |
| 611-801, gnl|Hg17|chr11 (67014273-67014083) | |
| 611-801, gnl|Mm7|chr19 (4010115-4010304) | |
| 989-1170, gnl|bosTau2|chr29 (39692263-39692444) | |
| 989-1170, gnl|canFam2|chr18 (53015657-53015446) | |
| 989-1170, gnl|canFam2|chr5 (33822735-33822533) | |
| 989-1170, gnl|danRer3|chr1 (41747612-41747401) | |
| 989-1170, gnl|danRer3|chr15 (31606065-31606276) | |
| 989-1170, gnl|dasNov1|scaffold_93052 (3235-3435) | |
| 989-1170, gnl|dasNov1|scaffold_93052 (3439-3231) | |
| 989-1170, gnl|echTel1|scaffold_188592 (724-922) | |
| 989-1170, gnl|echTel1|scaffold_248733 (6031-5823) | |
| 989-1170, gnl|fr1|chrUn (190738332-190738143) | |
| 989-1170, gnl|fr1|chrUn (145612482-145612679) | |
| 989-1170, gnl|galGal2|chr4 (1889554-1889370) | |
| 989-1170, gnl|galGal2|chr4 (1889367-1889558) | |
| 989-1170, gnl|hg17|chr11 (67011048-67011256) | |
| 989-1170, gnl|Hg17|chr11 (67011232-67011051) | |
| 989-1170, gnl|hg17|chr17 (6277934-6278147) | |
| 989-1170, gnl|loxAfr1|scaffold_65724 (10875-11082) | |
| 989-1170, gnl|loxAfr1|scaffold_65724 (11086-10878) | |
| 989-1170, gnl|mm7|chr11 (72118167-72118370) | |
| 989-1170, gnl|mm7|chr19 (4013079-4012881) | |
| 989-1170, gnl|Mm7|chr19 (4012893-4013074) | |
| 989-1170, gnl|monDom2|scaffold_107 (1584940-1584756) | |
| 989-1170, gnl|monDom2|scaffold_223 (151850-151643) | |
| 989-1170, gnl|oryCun1|scaffold_25944 (1376-1194) | |
| 989-1170, gnl|oryCun1|scaffold_75580 (417-596) | |
| 989-1170, gnl|panTro1|chr19 (6610405-6610618) | |
| 989-1170, gnl|panTro1|chr9 (68271502-68271710) | |
| 989-1170, gnl|rheMac2|chr14 (6969505-6969297) | |
| 989-1170, gnl|rheMac2|chr16 (6151890-6152102) | |
| 989-1170, gnl|rn3|chr1 (206855001-206854796) | |
| 989-1170, gnl|rn3|chr10 (58903216-58903428) | |
| 989-1170, gnl|tetNig1|chr10 (10050677-10050477) | |
| 989-1170, gnl|tetNig1|chr10 (10050475-10050658) | |
| 989-1170, gnl|xenTro1|scaffold_738 (608750-608942) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.396458) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| med (0.232504) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| csp (0.161186) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| med (0.232504) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| csp (0.161186) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |