Non-Coding RNA Search

Ss1.1-Pig4-TMW8051C04.5.5

Sequence:


               
               GCGGGACGGGCCCGGCGCGGGAGGGAGCGAAGCAGCGCCGGCAGAGAGCGAGATGCAGCG
CCGAGGCTTCCTCCTCCTCGCCCTCTTCGCCCTGCTAGCGCTCACCGACGCGGTGGCCAA
AAAGAAAGACAAAGTGAAGAAGGGCGGCCCGGGGAGCGAGTGTGCCGAGTGGACCTGGGG
GCCCTGCACCCCCAGCAGCAAGGACTGCGGAGTGGGTTTCCGCGAGGGCACCTGCGGGGC
CCAGACGCAGCGCGTCCGGTGCCGAGTGCCCTGTAACTGGAAGAAGGAGTTTGGAGCTGA
CTGCAAGTACAAGTTTGAGAGCTGGGGGGCATGTGATGGGGGCACAGGCACCAAAGCCCG
CCAAGGCACCCTGAAGAAGGCTCGGTACAATGCTCAGTGCCAGGAGACCATCCGTGTGAC
CAAGCCCTGCACCCCCAAGACCAAAGCCAAGGCCAAAGCCAAGAAAGGGAAGGGAAAAGA
TTAGCAGCCAGGCCTGGATGCCAAGGAGCCCCTGGCTTTACTCGGGGGCCTGGCCCACGC
CCTCCTTCCACAGGCCCAAGAAATAACCCACCAGTGCCTTTTGCCTACTCGTTAGCTTTA
TCAATCATGCCCCGCTTCCTCCCTTTCATGCTCCCACCCCCACCCGCAAGTGCCCGGAGT
GGGGAGGGACAAGGGATTCTGGGCAGCTTGAGCCTCCTCCCCTAAAGGGATTTGATTCCC
CCCTGGGCCCGCTGTGCTCCTTCCCCTCAATGATGCCATTACTAAGAAACAAAATAAACT
ATCATTTTTTTTCCCAATAAAAGCTTTTCTTTTAATAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGACGGGCCCGGCGCGGGAGGGAGCGAAGCAGCGCCGGCAGAGAGCGAGATGCAGCG
CCGAGGCTTCCTCCTCCTCGCCCTCTTCGCCCTGCTAGCGCTCACCGACGCGGTGGCCAA
AAAGAAAGACAAAGTGAAGAAGGGCGGCCCGGGGAGCGAGTGTGCCGAGTGGACCTGGGG
GCCCTGCACCCCCAGCAGCAAGGACTGCGGAGTGGGTTTCCGCGAGGGCACCTGCGGGGC
CCAGACGCAGCGCGTCCGGTGCCGAGTGCCCTGTAACTGGAAGAAGGAGTTTGGAGCTGA
CTGCAAGTACAAGTTTGAGAGCTGGGGGGCATGTGATGGGGGCACAGGCACCAAAGCCCG
CCAAGGCACCCTGAAGAAGGCTCGGTACAATGCTCAGTGCCAGGAGACCATCCGTGTGAC
CAAGCCCTGCACCCCCAAGACCAAAGCCAAGGCCAAAGCCAAGAAAGGGAAGGGAAAAGA
TTAGCAGCCAGGCCTGGATGCCAAGGAGCCCCTGGCTTTACTCGGGGGCCTGGCCCACGC
CCTCCTTCCACAGGCCCAAGAAATAACCCACCAGTGCCTTTTGCCTACTCGTTAGCTTTA
TCAATCATGCCCCGCTTCCTCCCTTTCATGCTCCCACCCCCACCCGCAAGTGCCCGGAGT
GGGGAGGGACAAGGGATTCTGGGCAGCTTGAGCCTCCTCCCCTAAAGGGATTTGATTCCC
CCCTGGGCCCGCTGTGCTCCTTCCCCTCAATGATGCCATTACTAAGAAACAAAATAAACT
ATCATTTTTTTTCCCAATAAAAGCTTTTCTTTTAATAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MK_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MK_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               174-293, - strand, RNAz p=0.609173

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-293, - strand, RNAz p=0.609173

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-702, gnl|bosTau2|chr11 (72090162-72089463)
               

               
               1-702, gnl|Hg17|chr11 (46359834-46361836)
               

               
               1-702, gnl|Mm7|chr2 (91782457-91780620)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-702, gnl|bosTau2|chr11 (72090162-72089463)
               

               
               1-702, gnl|Hg17|chr11 (46359834-46361836)
               

               
               1-702, gnl|Mm7|chr2 (91782457-91780620)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               elu (1.15607)
               

               
               eru (0.720288)
               

               
               mcp (0.682594)
               

               
               ese (0.506009)
               

               
               eje (0.494169)
               

               
               eep (0.367692)
               

               
               eye (0.341006)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (1.15607)
               

               
               eru (0.720288)
               

               
               mcp (0.682594)
               

               
               ese (0.506009)
               

               
               eje (0.494169)
               

               
               eep (0.367692)
               

               
               eye (0.341006)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-702, gnl\|bosTau2\|chr11 (72090162-72089463)
	1-702, gnl\|Hg17\|chr11 (46359834-46361836)
	1-702, gnl\|Mm7\|chr2 (91782457-91780620)

	elu (1.15607)
	eru (0.720288)
	mcp (0.682594)
	ese (0.506009)
	eje (0.494169)
	eep (0.367692)
	eye (0.341006)
	nmm (0.265604)
	cov (0.264306)
	ece (0.229305)
	fty (0.17584)
	ill (0.175593)
	fhi (0.169578)
	cag (0.151194)
	hyp (0.142837)
	hlv (0.139256)
	pla (0.133672)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)