Non-Coding RNA Search

Ss1.1-Pig4-TMW8051C10.3

Sequence:


               
               CAGAGGTGAGGGTCTGGCTTCTTTCTGTGGAAAAGCGCAGCGATCTTTCCTCCTGGAGCA
GCCTTGGCAGGGGGCTGGAGCGCTCGGTCTGCCCGGTCTGGTCTTGGGGGCCAGGGCTGG
GTTTCCCTCATGTATGGCAAGAGCCCTACGCGTGCTGTGCTTTTTCTCCTTGGCGTACAG
CTCACAGCTCTTTGGCCAACAGCAGCTGTGGAAATTTACACCTCTCGTCGCTCGGTCTGC
CCGGTCTGGTCTTGGGGGCCAGGGCTGGGTTTCCCTCATGTATGGCAAGAGCCCTACGCG
TGCTGTGCTTTTTCTCCTTGGCGTACAGCTCACAGCTCTTTGGCCAACAGCAGCTGTGGA
AATTTACACCTCTCGTGTGCTGGAGGCGGTCAATGGGACAGATATTCGGTTAAAATGCAC
TTTTTCCAGCTTTGCCCCGGTGGGTGATGCTCTAACAGTGACCTGGAATTTCCGTCCTCG
AGATGGGGGCCCTGAGCAATTTGTTTTCTACTACCACATGGAGCCCTTCTGATAGGAGAG
ATCCGTCTCAGTGTCGTGCAAACAGTGCGCTTCTCTGAGATCCACTTTTGATGTCTCCAT
ATTGGCTCCGCCTGTGCGCTGATGGTCATAATAGTAATACACCTGCCAGGTGAAGAACCC
ACCTGATGTTGACGATGGGCTGAAAGAGCTCATAAAGTGGTGGAGATAAAACCAAAAGAA
GAGGAAAGGCTCAACCAAGAAAAAAAAGTCTCTGTTTATTTAGAAGATACAGACTAACAT
CTTGAGATGGAAGCTGAAGATTTCCAAGAACAATCCTAGGTTAAGCTGAAGTTAATGGAA
GCTTTTCTTTGGCTTTTCCAGTTGTGACCTGTCTTCCAACCAGTTCTGCAGTATATAACT
ACCTAGACAAGTCAACGTTCCTCTGCAGCCAGCATAGGGTCCTTAGGCAGATAGCACTGG
ACTCACACATAGCCCCATTACTAAGGTTTTATTTAATTTCAGAGTGCAGATATTTTTCAA
ATGTTTGTTAGTTTTTGCATATGAAGAGGCTGTATTTTTGCCCTTAAACACTCCTTGTGG
ATTACAACTTGTATACTCATAATTTGGCATCAAATGGGATAAAAGCCAACTTGTCTGTCA
TAACATTTCCTTTAATATTAATTTCCTTAGAGCACCATTCTTGCTACTAAAGTTAACATG
TCTTCTTTTTCCTTCTCACACTCTCAATTAAAAGGTGAGATCATTCTCCCTGCTGTGTTT
TTTTTTTTTTAGGGCCACACCCTAACCACACCTTGGTTCCCAGGCAAGGGGTCCAATGGG
AGCTACAGCTGCCGGCCCACACCACACAGGATCTGAGCCAAGTCTGTGACCTATCCCACA
GCTTACAGCAATGCCAGATCCTTAATCCACTAAGCAAGGCCAGGGATTGAATCCACAACC
TCATGGTTCCTAGTCAGATTCATTTCCACTGTGCCATGATGGGAACTCCCCTCCCAGCTC
TTTTTGACTGATTAACAGAAAAACCTAAATCCAAACAGTTTGATTTTTATGGCTCTTATG
GGACAAATCTTGTTTTATTGAATTTCTTTCAATATCCTAGATGGCAAGTTTTTGTTTCTT
TGTTTTTGAACAATGGATCCAAGGTTTATAGTAGCACAAGTCTAAACCACAGAGTAACCA
AGGGATGGTTACATAAATGCTAATAGATTGACAAATGCCCCCTCAAGATTACTTGTCACC
TTTTGTTCAGTGCTGTGACAAGCAATCAATAGCACAGATCTTTCATGAGCACTGAATGAC
TGTTTGGCTTACTATACCCCCAATTTATTTATAATAACAAAATCTATGCTCATTTGTAGA
CTGGAATCATTAAGCAGTTAAATGGAAGGATTCTGTAGCAGTATATTAAAAATTAAAACT
TTAGGGCTGGTGAATAAAAATCAACCCTAAATGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGTGAGGGTCTGGCTTCTTTCTGTGGAAAAGCGCAGCGATCTTTCCTCCTGGAGCA
GCCTTGGCAGGGGGCTGGAGCGCTCGGTCTGCCCGGTCTGGTCTTGGGGGCCAGGGCTGG
GTTTCCCTCATGTATGGCAAGAGCCCTACGCGTGCTGTGCTTTTTCTCCTTGGCGTACAG
CTCACAGCTCTTTGGCCAACAGCAGCTGTGGAAATTTACACCTCTCGTCGCTCGGTCTGC
CCGGTCTGGTCTTGGGGGCCAGGGCTGGGTTTCCCTCATGTATGGCAAGAGCCCTACGCG
TGCTGTGCTTTTTCTCCTTGGCGTACAGCTCACAGCTCTTTGGCCAACAGCAGCTGTGGA
AATTTACACCTCTCGTGTGCTGGAGGCGGTCAATGGGACAGATATTCGGTTAAAATGCAC
TTTTTCCAGCTTTGCCCCGGTGGGTGATGCTCTAACAGTGACCTGGAATTTCCGTCCTCG
AGATGGGGGCCCTGAGCAATTTGTTTTCTACTACCACATGGAGCCCTTCTGATAGGAGAG
ATCCGTCTCAGTGTCGTGCAAACAGTGCGCTTCTCTGAGATCCACTTTTGATGTCTCCAT
ATTGGCTCCGCCTGTGCGCTGATGGTCATAATAGTAATACACCTGCCAGGTGAAGAACCC
ACCTGATGTTGACGATGGGCTGAAAGAGCTCATAAAGTGGTGGAGATAAAACCAAAAGAA
GAGGAAAGGCTCAACCAAGAAAAAAAAGTCTCTGTTTATTTAGAAGATACAGACTAACAT
CTTGAGATGGAAGCTGAAGATTTCCAAGAACAATCCTAGGTTAAGCTGAAGTTAATGGAA
GCTTTTCTTTGGCTTTTCCAGTTGTGACCTGTCTTCCAACCAGTTCTGCAGTATATAACT
ACCTAGACAAGTCAACGTTCCTCTGCAGCCAGCATAGGGTCCTTAGGCAGATAGCACTGG
ACTCACACATAGCCCCATTACTAAGGTTTTATTTAATTTCAGAGTGCAGATATTTTTCAA
ATGTTTGTTAGTTTTTGCATATGAAGAGGCTGTATTTTTGCCCTTAAACACTCCTTGTGG
ATTACAACTTGTATACTCATAATTTGGCATCAAATGGGATAAAAGCCAACTTGTCTGTCA
TAACATTTCCTTTAATATTAATTTCCTTAGAGCACCATTCTTGCTACTAAAGTTAACATG
TCTTCTTTTTCCTTCTCACACTCTCAATTAAAAGGTGAGATCATTCTCCCTGCTGTGTTT
TTTTTTTTTTAGGGCCACACCCTAACCACACCTTGGTTCCCAGGCAAGGGGTCCAATGGG
AGCTACAGCTGCCGGCCCACACCACACAGGATCTGAGCCAAGTCTGTGACCTATCCCACA
GCTTACAGCAATGCCAGATCCTTAATCCACTAAGCAAGGCCAGGGATTGAATCCACAACC
TCATGGTTCCTAGTCAGATTCATTTCCACTGTGCCATGATGGGAACTCCCCTCCCAGCTC
TTTTTGACTGATTAACAGAAAAACCTAAATCCAAACAGTTTGATTTTTATGGCTCTTATG
GGACAAATCTTGTTTTATTGAATTTCTTTCAATATCCTAGATGGCAAGTTTTTGTTTCTT
TGTTTTTGAACAATGGATCCAAGGTTTATAGTAGCACAAGTCTAAACCACAGAGTAACCA
AGGGATGGTTACATAAATGCTAATAGATTGACAAATGCCCCCTCAAGATTACTTGTCACC
TTTTGTTCAGTGCTGTGACAAGCAATCAATAGCACAGATCTTTCATGAGCACTGAATGAC
TGTTTGGCTTACTATACCCCCAATTTATTTATAATAACAAAATCTATGCTCATTTGTAGA
CTGGAATCATTAAGCAGTTAAATGGAAGGATTCTGTAGCAGTATATTAAAAATTAAAACT
TTAGGGCTGGTGAATAAAAATCAACCCTAAATGATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62751654|ref|NP_001015673.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62751654|ref|NP_001015673.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-228, gnl|bosTau2|chr11 (17749565-17749335)
               

               
               1-228, gnl|Hg17|chr11 (117640214-117638982)
               

               
               1-228, gnl|Mm7|chr9 (44976951-44978085)
               


               
               230-1259, gnl|bosTau2|chr11 (17749481-17748466)
               

               
               230-1259, gnl|Hg17|chr11 (117640126-117630696)
               


               
               1534-1729, gnl|bosTau2|chr11 (17748426-17748234)
               

               
               1534-1729, gnl|Hg17|chr11 (117630658-117630464)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr11 (17749565-17749335)
               

               
               1-228, gnl|Hg17|chr11 (117640214-117638982)
               

               
               1-228, gnl|Mm7|chr9 (44976951-44978085)
               


               
               230-1259, gnl|bosTau2|chr11 (17749481-17748466)
               

               
               230-1259, gnl|Hg17|chr11 (117640126-117630696)
               


               
               1534-1729, gnl|bosTau2|chr11 (17748426-17748234)
               

               
               1534-1729, gnl|Hg17|chr11 (117630658-117630464)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               bla (0.248694)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

	1-228, gnl\|bosTau2\|chr11 (17749565-17749335)
	1-228, gnl\|Hg17\|chr11 (117640214-117638982)
	1-228, gnl\|Mm7\|chr9 (44976951-44978085)

	230-1259, gnl\|bosTau2\|chr11 (17749481-17748466)
	230-1259, gnl\|Hg17\|chr11 (117640126-117630696)

	1534-1729, gnl\|bosTau2\|chr11 (17748426-17748234)
	1534-1729, gnl\|Hg17\|chr11 (117630658-117630464)

	bla (0.248694)
	sag (0.182715)
	sin (0.174948)
	nco (0.161734)
	thg (0.126791)
	eje (0.0988338)