Non-Coding RNA Search

Ss1.1-Pig4-TMW8051C13.3

Sequence:


               
               TGTATTCAGTGGATACATGTGTAGGAGGGTGCAGTTACCCTCAACTCCATTCTGTGAAGT
CTCTCTTGCCATAGCACAGATATACACACAAACCCTGCAGTTTGTATGGACCTAGAAAGT
CCAGGGGGTGTTCAGATTCACAGGGTGAAATATTCCTTCGTTTGAATGCATTTGTTGACT
GCTACAAAGGACCCATGTGCTCAAGGGTTTCTTTCTTTCAGGGACGTTTGGAAAGCCTCT
GAGGAGACCTCACCTGGATGCCTTTTCAAGCTCTGGACAGGCATCGGATTGTCAGCCCAG
AGCCTTTCACTTGAAAGCACGTTCTTCTCCGAACTTGGACTGTGAGTCAGAGGAAGATGG
GAAAGAAAGGACAGATTTTCAGCAAGAAAATCACACATATACCTATAAACAGAGCTTAGA
AAACCACAGGACTTCAAATTTTCAGTCTTATGACTTGGACACATAAATGGGATGGGACCA
AGGAAGAATTCTAACATACTACCTCAAGTGGACTTTTATTTAAAAGAGAGAGAATCCTAT
GTTTTTAAATGGAGCTATGAATTTTAAAAGGATAAAACGTCTTATTTATACAGATGGACC
AAAATTACAAAAACTTATAAAAATTTTATACTGGGAGTAACTTTCATATAAGAATGCCTT
TTTAAACTATTTTACTATTTTATACTTGGCTTTATGCAAAAAAAATATCTTATGTAAATT
AATGGTATAAATCCATGACTATTTTATGTATTTTTATAATGCCAGATGTCTTTTTATTGA
AAATGAGTACTAAAGCATTTTAAACAATAACTGTCTTGTACATTTTTTGAATAGAGGTCA
CCGCATTTTATTTTGCACATTACATTTAATAAAGTGTGTCATTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATTCAGTGGATACATGTGTAGGAGGGTGCAGTTACCCTCAACTCCATTCTGTGAAGT
CTCTCTTGCCATAGCACAGATATACACACAAACCCTGCAGTTTGTATGGACCTAGAAAGT
CCAGGGGGTGTTCAGATTCACAGGGTGAAATATTCCTTCGTTTGAATGCATTTGTTGACT
GCTACAAAGGACCCATGTGCTCAAGGGTTTCTTTCTTTCAGGGACGTTTGGAAAGCCTCT
GAGGAGACCTCACCTGGATGCCTTTTCAAGCTCTGGACAGGCATCGGATTGTCAGCCCAG
AGCCTTTCACTTGAAAGCACGTTCTTCTCCGAACTTGGACTGTGAGTCAGAGGAAGATGG
GAAAGAAAGGACAGATTTTCAGCAAGAAAATCACACATATACCTATAAACAGAGCTTAGA
AAACCACAGGACTTCAAATTTTCAGTCTTATGACTTGGACACATAAATGGGATGGGACCA
AGGAAGAATTCTAACATACTACCTCAAGTGGACTTTTATTTAAAAGAGAGAGAATCCTAT
GTTTTTAAATGGAGCTATGAATTTTAAAAGGATAAAACGTCTTATTTATACAGATGGACC
AAAATTACAAAAACTTATAAAAATTTTATACTGGGAGTAACTTTCATATAAGAATGCCTT
TTTAAACTATTTTACTATTTTATACTTGGCTTTATGCAAAAAAAATATCTTATGTAAATT
AATGGTATAAATCCATGACTATTTTATGTATTTTTATAATGCCAGATGTCTTTTTATTGA
AAATGAGTACTAAAGCATTTTAAACAATAACTGTCTTGTACATTTTTTGAATAGAGGTCA
CCGCATTTTATTTTGCACATTACATTTAATAAAGTGTGTCATTTTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-461, + strand, RNAz p=0.939055

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-461, + strand, RNAz p=0.939055

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY358288, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY358288, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chrX (14981244-14982116)
               

               
               1-888, gnl|Hg17|chr12 (57553091-57552203)
               

               
               1-888, gnl|Mm7|chr10 (125506876-125507715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chrX (14981244-14982116)
               

               
               1-888, gnl|Hg17|chr12 (57553091-57552203)
               

               
               1-888, gnl|Mm7|chr10 (125506876-125507715)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sag (0.36543)
               

               
               lyg (0.266205)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               lyg (0.266205)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	1-888, gnl\|bosTau2\|chrX (14981244-14982116)
	1-888, gnl\|Hg17\|chr12 (57553091-57552203)
	1-888, gnl\|Mm7\|chr10 (125506876-125507715)

	sag (0.36543)
	lyg (0.266205)
	rec (0.17307)
	tbr (0.154178)
	ski (0.146735)
	csk (0.140746)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	jca (0.11396)