Ss1.1-Pig4-TMW8051C15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTAGTGTAAAAATAGCTAAAGAAGCTGTAATGAATATAAATAAACCTGAAAGCCTTTT TAAGCCTACCAATGGGTTTCTAGAAACCAAAGTATACTTTGCGGGACTACCTCGGAAAGT GGAGAATGCACTCATTAAACCGATTAACCCTCGTCTAGATGGATGTATTCGAGGCTGGAA TCTGATGAATCAAGGAGCTTCAGGAGTGAAGGAAATCATTCAAGAAAAACAAAATAAGCA TTGTCTTGTCACTGTGGAGAAGGGTTCCTACTATCCTGGTTCTGGAGTTGCTCAATTTAG CATAGATTATAAGAATGTATCCAGTGCTGGGGCTTGGCAAGTAAATGTGTCCTTGAATAT TCGCCCATCAGCAGGCACTGGTGTTATGTTGGCCTTGGTTTCTGGTAACACAGTGCCTTT TGCCTTGTCCTTGGTGGACTCCGCCACTGAAAAGCTTCAGGATATCGTGGTATCTGTTGA AAATGTGGAAATAGCTCGAATAAAGGCCTTAAGTCTGTGTTCCAGTCTACAATCCCTTCT GGAAATGAGAGTCAGTGTAAACAGTTTGGAGCTATTGACTCAATTTGAAAAACGTAGGAT CTCCTCTGAAGACTATCAGGGACAATTTGCCATCTTGGATAAAGCAATGGAAGGAACAGT GGCCACTTACCTGGGTGGCCTTCCAGATGTTCCATTCAGTGCCACACCAGTGAACGCCTT TTATAATGGCTGCATGGACGTGATCATTAACGGTGTACCGTTGGATCTGGATGAAGCCAT TGCTAAACATAACGATATTAGAGCTCATTCATGTCCATCAGTTTGGAAGAACACAAGGAA TACTTAAGGCATCTTTTCTCTGCTGATATCTTTTTCCTGTGTATAATTATACTTATGTTT CAATACTAGTTGAAGGGTTCAACTTGTGATGTGCAGACCTTGATTATTTTGTGGTATTTT AACCTTTCTGGAATTTTAAAAAGGTCCTTTTTCAAGAAAACAGGGTTCTTTTGTGATATA AATCACATTAAAAAATTCTTATCTCTGTTGCTGTCTAGAAATTAAATAATGAAACATAAA CAATTTTAATTTGAATGTTTTGCTACAAATGGCATTTCTTCATTTTTATGTTTGTAAAAG TAAAATGTAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTAGTGTAAAAATAGCTAAAGAAGCTGTAATGAATATAAATAAACCTGAAAGCCTTTT TAAGCCTACCAATGGGTTTCTAGAAACCAAAGTATACTTTGCGGGACTACCTCGGAAAGT GGAGAATGCACTCATTAAACCGATTAACCCTCGTCTAGATGGATGTATTCGAGGCTGGAA TCTGATGAATCAAGGAGCTTCAGGAGTGAAGGAAATCATTCAAGAAAAACAAAATAAGCA TTGTCTTGTCACTGTGGAGAAGGGTTCCTACTATCCTGGTTCTGGAGTTGCTCAATTTAG CATAGATTATAAGAATGTATCCAGTGCTGGGGCTTGGCAAGTAAATGTGTCCTTGAATAT TCGCCCATCAGCAGGCACTGGTGTTATGTTGGCCTTGGTTTCTGGTAACACAGTGCCTTT TGCCTTGTCCTTGGTGGACTCCGCCACTGAAAAGCTTCAGGATATCGTGGTATCTGTTGA AAATGTGGAAATAGCTCGAATAAAGGCCTTAAGTCTGTGTTCCAGTCTACAATCCCTTCT GGAAATGAGAGTCAGTGTAAACAGTTTGGAGCTATTGACTCAATTTGAAAAACGTAGGAT CTCCTCTGAAGACTATCAGGGACAATTTGCCATCTTGGATAAAGCAATGGAAGGAACAGT GGCCACTTACCTGGGTGGCCTTCCAGATGTTCCATTCAGTGCCACACCAGTGAACGCCTT TTATAATGGCTGCATGGACGTGATCATTAACGGTGTACCGTTGGATCTGGATGAAGCCAT TGCTAAACATAACGATATTAGAGCTCATTCATGTCCATCAGTTTGGAAGAACACAAGGAA TACTTAAGGCATCTTTTCTCTGCTGATATCTTTTTCCTGTGTATAATTATACTTATGTTT CAATACTAGTTGAAGGGTTCAACTTGTGATGTGCAGACCTTGATTATTTTGTGGTATTTT AACCTTTCTGGAATTTTAAAAAGGTCCTTTTTCAAGAAAACAGGGTTCTTTTGTGATATA AATCACATTAAAAAATTCTTATCTCTGTTGCTGTCTAGAAATTAAATAATGAAACATAAA CAATTTTAATTTGAATGTTTTGCTACAAATGGCATTTCTTCATTTTTATGTTTGTAAAAG TAAAATGTAATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 142-311, gnl|bosTau2|chr1 (26870495-26870326) | |
| 142-311, gnl|canFam2|chr33 (4638659-4638845) | |
| 142-311, gnl|danRer3|chrUn (104761186-104761006) | |
| 142-311, gnl|dasNov1|scaffold_198104 (3900-4085) | |
| 142-311, gnl|echTel1|scaffold_302059 (1670-1857) | |
| 142-311, gnl|fr1|chrUn (162974055-162973872) | |
| 142-311, gnl|galGal2|chr1 (83602408-83602594) | |
| 142-311, gnl|hg17|chr3 (90345643-90345829) | |
| 142-311, gnl|Hg17|chr3 (95086431-95086262) | |
| 142-311, gnl|loxAfr1|scaffold_42205 (17171-17357) | |
| 142-311, gnl|mm7|chr16 (62860119-62859933) | |
| 142-311, gnl|Mm7|chr16 (62859938-62860107) | |
| 142-311, gnl|monDom2|scaffold_25 (14154531-14154720) | |
| 142-311, gnl|oryCun1|scaffold_42557 (1237-1052) | |
| 142-311, gnl|panTro1|chr2 (95891018-95891204) | |
| 142-311, gnl|rheMac2|chr2 (14348011-14348197) | |
| 142-311, gnl|rn3|chrUn (8287404-8287218) | |
| 142-311, gnl|tetNig1|chr5 (8254342-8254156) | |
| 142-311, gnl|xenTro1|scaffold_255 (1097446-1097261) | |
| 312-461, gnl|bosTau2|chr1 (26868680-26868531) | |
| 312-461, gnl|echTel1|scaffold_231659 (12520-12707) | |
| 312-461, gnl|galGal2|chr1 (83600704-83600885) | |
| 312-461, gnl|hg17|chr3 (90340039-90340230) | |
| 312-461, gnl|Hg17|chr3 (95080848-95080696) | |
| 312-461, gnl|loxAfr1|scaffold_42205 (12461-12651) | |
| 312-461, gnl|mm7|chr16 (62865103-62864912) | |
| 312-461, gnl|Mm7|chr16 (62864942-62865091) | |
| 312-461, gnl|monDom2|scaffold_25 (14152581-14152770) | |
| 312-461, gnl|oryCun1|scaffold_102033 (3771-3581) | |
| 312-461, gnl|panTro1|chr2 (95885448-95885639) | |
| 312-461, gnl|rheMac2|chr2 (14342403-14342594) | |
| 312-461, gnl|rn3|chrUn (8292279-8292091) | |
| 312-461, gnl|xenTro1|scaffold_255 (1098361-1098184) | |
| 684-1152, gnl|bosTau2|chr1 (26860660-26860189) | |
| 684-1152, gnl|canFam2|chr33 (4629242-4629612) | |
| 684-1152, gnl|dasNov1|scaffold_7802 (4766-5131) | |
| 684-1152, gnl|echTel1|scaffold_231659 (1532-1863) | |
| 684-1152, gnl|galGal2|chr1 (83597204-83597559) | |
| 684-1152, gnl|hg17|chr3 (90333827-90334179) | |
| 684-1152, gnl|Hg17|chr3 (95075942-95075484) | |
| 684-1152, gnl|loxAfr1|scaffold_42205 (4983-5371) | |
| 684-1152, gnl|mm7|chr16 (62868958-62868598) | |
| 684-1152, gnl|Mm7|chr16 (62868456-62868918) | |
| 684-1152, gnl|monDom2|scaffold_25 (14144042-14144421) | |
| 684-1152, gnl|oryCun1|scaffold_209179 (6739-7087) | |
| 684-1152, gnl|panTro1|chr2 (95879026-95879383) | |
| 684-1152, gnl|rheMac2|chr2 (14336610-14336939) | |
| 684-1152, gnl|rn3|chrUn (8299238-8298892) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-311, gnl|bosTau2|chr1 (26870495-26870326) | |
| 142-311, gnl|canFam2|chr33 (4638659-4638845) | |
| 142-311, gnl|danRer3|chrUn (104761186-104761006) | |
| 142-311, gnl|dasNov1|scaffold_198104 (3900-4085) | |
| 142-311, gnl|echTel1|scaffold_302059 (1670-1857) | |
| 142-311, gnl|fr1|chrUn (162974055-162973872) | |
| 142-311, gnl|galGal2|chr1 (83602408-83602594) | |
| 142-311, gnl|hg17|chr3 (90345643-90345829) | |
| 142-311, gnl|Hg17|chr3 (95086431-95086262) | |
| 142-311, gnl|loxAfr1|scaffold_42205 (17171-17357) | |
| 142-311, gnl|mm7|chr16 (62860119-62859933) | |
| 142-311, gnl|Mm7|chr16 (62859938-62860107) | |
| 142-311, gnl|monDom2|scaffold_25 (14154531-14154720) | |
| 142-311, gnl|oryCun1|scaffold_42557 (1237-1052) | |
| 142-311, gnl|panTro1|chr2 (95891018-95891204) | |
| 142-311, gnl|rheMac2|chr2 (14348011-14348197) | |
| 142-311, gnl|rn3|chrUn (8287404-8287218) | |
| 142-311, gnl|tetNig1|chr5 (8254342-8254156) | |
| 142-311, gnl|xenTro1|scaffold_255 (1097446-1097261) | |
| 312-461, gnl|bosTau2|chr1 (26868680-26868531) | |
| 312-461, gnl|echTel1|scaffold_231659 (12520-12707) | |
| 312-461, gnl|galGal2|chr1 (83600704-83600885) | |
| 312-461, gnl|hg17|chr3 (90340039-90340230) | |
| 312-461, gnl|Hg17|chr3 (95080848-95080696) | |
| 312-461, gnl|loxAfr1|scaffold_42205 (12461-12651) | |
| 312-461, gnl|mm7|chr16 (62865103-62864912) | |
| 312-461, gnl|Mm7|chr16 (62864942-62865091) | |
| 312-461, gnl|monDom2|scaffold_25 (14152581-14152770) | |
| 312-461, gnl|oryCun1|scaffold_102033 (3771-3581) | |
| 312-461, gnl|panTro1|chr2 (95885448-95885639) | |
| 312-461, gnl|rheMac2|chr2 (14342403-14342594) | |
| 312-461, gnl|rn3|chrUn (8292279-8292091) | |
| 312-461, gnl|xenTro1|scaffold_255 (1098361-1098184) | |
| 684-1152, gnl|bosTau2|chr1 (26860660-26860189) | |
| 684-1152, gnl|canFam2|chr33 (4629242-4629612) | |
| 684-1152, gnl|dasNov1|scaffold_7802 (4766-5131) | |
| 684-1152, gnl|echTel1|scaffold_231659 (1532-1863) | |
| 684-1152, gnl|galGal2|chr1 (83597204-83597559) | |
| 684-1152, gnl|hg17|chr3 (90333827-90334179) | |
| 684-1152, gnl|Hg17|chr3 (95075942-95075484) | |
| 684-1152, gnl|loxAfr1|scaffold_42205 (4983-5371) | |
| 684-1152, gnl|mm7|chr16 (62868958-62868598) | |
| 684-1152, gnl|Mm7|chr16 (62868456-62868918) | |
| 684-1152, gnl|monDom2|scaffold_25 (14144042-14144421) | |
| 684-1152, gnl|oryCun1|scaffold_209179 (6739-7087) | |
| 684-1152, gnl|panTro1|chr2 (95879026-95879383) | |
| 684-1152, gnl|rheMac2|chr2 (14336610-14336939) | |
| 684-1152, gnl|rn3|chrUn (8299238-8298892) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| ret (1.02987) | |
| ova (0.774793) | |
| rec (0.692281) | |
| tes (0.623441) | |
| fat (0.442282) | |
| mas (0.42061) | |
| fli (0.405762) | |
| sag (0.36543) | |
| sin (0.349895) | |
| mga (0.32041) | |
| sme (0.305437) | |
| lun (0.300978) | |
| cte (0.29274) | |
| kid (0.259471) | |
| sug (0.254582) | |
| bla (0.248694) | |
| hea (0.204499) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.02987) | |
| ova (0.774793) | |
| rec (0.692281) | |
| tes (0.623441) | |
| fat (0.442282) | |
| mas (0.42061) | |
| fli (0.405762) | |
| sag (0.36543) | |
| sin (0.349895) | |
| mga (0.32041) | |
| sme (0.305437) | |
| lun (0.300978) | |
| cte (0.29274) | |
| kid (0.259471) | |
| sug (0.254582) | |
| bla (0.248694) | |
| hea (0.204499) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| jej (0.0989218) | |
| ldo (0.0970026) |