Non-Coding RNA Search

Ss1.1-Pig4-TMW8051C21.5

Sequence:


               
               CTGACTGCTCCCTGTAATGCCAATTGTAACTGCCTGCGATCATATTATTATCCTCTCTGT
GGAGGAGATGGAGTGCAATATTTTTCTCCCTGCTATGCAGGTTGTACAAATTCCATTTCC
AAAAAACATCCAAAGGTATATCAAAACTGTTCATGTATTAAAAGGAAAATAGAAATAACA
CCTACTCCATCAAGTCCTGATTTTGAGGCTAAAGCTGGAAAATGTTCAGTTCAATGTAAA
AACTTGCCCATATTCCTTGGCATATTCTTTGCTGCAATTGTTTTTACCTTTATGGCTGGT
ACTCCTATAACTGTGTCCATCCTAAGGTGTGTTAATCAAAATCAACGGTCTCTAGCTTTG
GGAATACAGTGTATGTTGCTTCGAATATTAGGCACAATACCTGGACCCATTATATTTGGC
ATCGCAATAGACAGCACATGCGTTCTCTGGGATATTAACAAATGCGGAATTAAAGGAGCT
TGCTGGGTTTATAATAACATCCAGATGGCCTATATGTTCATGGCCATAAGTATTATTTGT
AAAATTTTCACTGTTTTCTTCAATGGATGTGCAGTCTTTTTGTATAAACCACCACCATCA
GCCACAGATGTGCCATTTCAAGATCAGGATGCAGTTGTGACTACAGTTTCATTAGAGTGT
GATCTCAATGAAGCAGGAAATAAAGGGTGAATCAGAAAAAGAGAAGACTTTTACAGTTCG
ATTAAAAATTGGCCTCCATTTGTAAGAATGTATATTGTTGCTGGAACAGTAACTACCCAA
TATGGACAATCATTTTAAAAATTGATATTTTATAATTAAATGTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTGCTCCCTGTAATGCCAATTGTAACTGCCTGCGATCATATTATTATCCTCTCTGT
GGAGGAGATGGAGTGCAATATTTTTCTCCCTGCTATGCAGGTTGTACAAATTCCATTTCC
AAAAAACATCCAAAGGTATATCAAAACTGTTCATGTATTAAAAGGAAAATAGAAATAACA
CCTACTCCATCAAGTCCTGATTTTGAGGCTAAAGCTGGAAAATGTTCAGTTCAATGTAAA
AACTTGCCCATATTCCTTGGCATATTCTTTGCTGCAATTGTTTTTACCTTTATGGCTGGT
ACTCCTATAACTGTGTCCATCCTAAGGTGTGTTAATCAAAATCAACGGTCTCTAGCTTTG
GGAATACAGTGTATGTTGCTTCGAATATTAGGCACAATACCTGGACCCATTATATTTGGC
ATCGCAATAGACAGCACATGCGTTCTCTGGGATATTAACAAATGCGGAATTAAAGGAGCT
TGCTGGGTTTATAATAACATCCAGATGGCCTATATGTTCATGGCCATAAGTATTATTTGT
AAAATTTTCACTGTTTTCTTCAATGGATGTGCAGTCTTTTTGTATAAACCACCACCATCA
GCCACAGATGTGCCATTTCAAGATCAGGATGCAGTTGTGACTACAGTTTCATTAGAGTGT
GATCTCAATGAAGCAGGAAATAAAGGGTGAATCAGAAAAAGAGAAGACTTTTACAGTTCG
ATTAAAAATTGGCCTCCATTTGTAAGAATGTATATTGTTGCTGGAACAGTAACTACCCAA
TATGGACAATCATTTTAAAAATTGATATTTTATAATTAAATGTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55730798|emb|CAH92118.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55730798|emb|CAH92118.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               134-332, gnl|bosTau2|chr7 (63354229-63354031)
               

               
               134-332, gnl|Hg17|chr5 (101611047-101610849)
               

               
               134-332, gnl|Mm7|chr1 (96680861-96680669)
               


               
               495-691, gnl|bosTau2|chr7 (63347996-63347800)
               

               
               495-691, gnl|Hg17|chr5 (101600654-101600460)
               

               
               495-691, gnl|Mm7|chr1 (96671052-96670830)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-332, gnl|bosTau2|chr7 (63354229-63354031)
               

               
               134-332, gnl|Hg17|chr5 (101611047-101610849)
               

               
               134-332, gnl|Mm7|chr1 (96680861-96680669)
               


               
               495-691, gnl|bosTau2|chr7 (63347996-63347800)
               

               
               495-691, gnl|Hg17|chr5 (101600654-101600460)
               

               
               495-691, gnl|Mm7|chr1 (96671052-96670830)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgm (0.180343)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	134-332, gnl\|bosTau2\|chr7 (63354229-63354031)
	134-332, gnl\|Hg17\|chr5 (101611047-101610849)
	134-332, gnl\|Mm7\|chr1 (96680861-96680669)

	495-691, gnl\|bosTau2\|chr7 (63347996-63347800)
	495-691, gnl\|Hg17\|chr5 (101600654-101600460)
	495-691, gnl\|Mm7\|chr1 (96671052-96670830)