Ss1.1-Pig4-TMW8051C22.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGCGCTGGCAAATACGGTTTCCCAGTTCGCCCTGGCTCTGCTGCTCTTTCTCTACAT CGGGGGGAAGAAGCTGCACCGCGACACCTGGGGAGGGTGGTCCTGGGAGTGCCTGCAGGA CTGGGCCTCCTTCTTCTCGCTGGCCGTCCCCAGCATGCTCATGCTGTGCATCGAGTGGTG GGCCTACGAGATCGGGAGCTTCCTGAGCGGTACCCTGGGCATGGTGGAGCTGGGAGCCCA GTCCGTCGTGTACGAGCTGGCTGTCATCGTGTACATGGTACCCACAGGCTTCAGCGTGGC CGCCAGCGTCCAGGTGGGGAACGCGCTGGGGGCCGGAAACATCGAGCAGGCCAGAAGGTC CTCGGTTGTCGCCCTGGTGGTCACAGAGCTTTTCGCAGTAACCTTCTGCGTCCTGCTCCT GAGCTGCAAGGACCTTGTGGGCTACGTTTTCACCAAGGACCGGGAAATCATTGCCCTGGT GGCCCAGGTGGTTCCGATTTACGCTGTTTCCCATCTCTTTGAGGGTCTGGCGTGCACCTG TGGCGGCGTGCTGCGGGGGAGCGGAAACCAGCGGGTCGGGGCCATTGTCAACACCATCGG GTATTATGTGGTCGGTCTTCCCATCGGGATTTCGCTGATGTTTGCCACTGGACTTGGAGT GGTCGGTCTCTGGCTCGGAATCATCATCTGCACCATCTCCCAGGCCGTGTGTTTTCTGGG CTTCATTGCGCGGCTAAACTGGAAAACAGCCTGCCAGCAGGCTCAGGTCCATGCCAATTT GAAACTAAACGTGGCCCAGGACAGGACCGCAGTTCTCTCGAGGGAGCCACCCTACCCAGT GGGCCCTGAAAACCTCGGAGGAGTTTTGCTGAGAGATGTTGCCAAAATAGAGGCGACCCC GTTGGGTCAGCAGCCACCCCAGGAAGAGCACGTCGAGGTTCATCCCAGAGCCGAGCCGAC CTTGTCCGGGAGACAGTTGCTGCTGCGTCGAGGGCTGCTGCTCCTGGGGGCCCTGTCCCT CTTGCTGGTGGGGATTTTAGTGAGAGTGTGTGTCAGGATTCAGTGACGGGGCTGGAGAGG GTCAGGTCACGTGATGAGAGGGAGACCGGCAGGTCACGTGATGCTTGTGCTGCCGAACAA AGAATTCACCGGCCCTGAGGCGGCAGTTTGTTTGCAGGGGACTTTATGGATGTCCCGAAG GGAGGGTTCCAAGGTATTTTCTGATGAAGAAAAGGAACTAACATAAAAAATACATGTTAG CCCAAGACAGCGCCTGTTGTAACCGAGGACCCCGCGCGCTGGCTGCCTGGATGGAGGGCT TTGATGTTTCTTCTGCTTACTGGTTTCTTGTTCTTTAGACACAATCCCACATACCGAGGA TACTTAAGGATTCTTACTCTCTGAATTATTTAAAATATATTTTACAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGCGCTGGCAAATACGGTTTCCCAGTTCGCCCTGGCTCTGCTGCTCTTTCTCTACAT CGGGGGGAAGAAGCTGCACCGCGACACCTGGGGAGGGTGGTCCTGGGAGTGCCTGCAGGA CTGGGCCTCCTTCTTCTCGCTGGCCGTCCCCAGCATGCTCATGCTGTGCATCGAGTGGTG GGCCTACGAGATCGGGAGCTTCCTGAGCGGTACCCTGGGCATGGTGGAGCTGGGAGCCCA GTCCGTCGTGTACGAGCTGGCTGTCATCGTGTACATGGTACCCACAGGCTTCAGCGTGGC CGCCAGCGTCCAGGTGGGGAACGCGCTGGGGGCCGGAAACATCGAGCAGGCCAGAAGGTC CTCGGTTGTCGCCCTGGTGGTCACAGAGCTTTTCGCAGTAACCTTCTGCGTCCTGCTCCT GAGCTGCAAGGACCTTGTGGGCTACGTTTTCACCAAGGACCGGGAAATCATTGCCCTGGT GGCCCAGGTGGTTCCGATTTACGCTGTTTCCCATCTCTTTGAGGGTCTGGCGTGCACCTG TGGCGGCGTGCTGCGGGGGAGCGGAAACCAGCGGGTCGGGGCCATTGTCAACACCATCGG GTATTATGTGGTCGGTCTTCCCATCGGGATTTCGCTGATGTTTGCCACTGGACTTGGAGT GGTCGGTCTCTGGCTCGGAATCATCATCTGCACCATCTCCCAGGCCGTGTGTTTTCTGGG CTTCATTGCGCGGCTAAACTGGAAAACAGCCTGCCAGCAGGCTCAGGTCCATGCCAATTT GAAACTAAACGTGGCCCAGGACAGGACCGCAGTTCTCTCGAGGGAGCCACCCTACCCAGT GGGCCCTGAAAACCTCGGAGGAGTTTTGCTGAGAGATGTTGCCAAAATAGAGGCGACCCC GTTGGGTCAGCAGCCACCCCAGGAAGAGCACGTCGAGGTTCATCCCAGAGCCGAGCCGAC CTTGTCCGGGAGACAGTTGCTGCTGCGTCGAGGGCTGCTGCTCCTGGGGGCCCTGTCCCT CTTGCTGGTGGGGATTTTAGTGAGAGTGTGTGTCAGGATTCAGTGACGGGGCTGGAGAGG GTCAGGTCACGTGATGAGAGGGAGACCGGCAGGTCACGTGATGCTTGTGCTGCCGAACAA AGAATTCACCGGCCCTGAGGCGGCAGTTTGTTTGCAGGGGACTTTATGGATGTCCCGAAG GGAGGGTTCCAAGGTATTTTCTGATGAAGAAAAGGAACTAACATAAAAAATACATGTTAG CCCAAGACAGCGCCTGTTGTAACCGAGGACCCCGCGCGCTGGCTGCCTGGATGGAGGGCT TTGATGTTTCTTCTGCTTACTGGTTTCTTGTTCTTTAGACACAATCCCACATACCGAGGA TACTTAAGGATTCTTACTCTCTGAATTATTTAAAATATATTTTACAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 94-219, gnl|bosTau2|chr19 (24720384-24720258) | |
| 94-219, gnl|canFam2|chr5 (43664496-43664358) | |
| 94-219, gnl|danRer3|chrUn (13143943-13144073) | |
| 94-219, gnl|dasNov1|scaffold_95040 (7729-7591) | |
| 94-219, gnl|echTel1|scaffold_223442 (4427-4305) | |
| 94-219, gnl|fr1|chrUn (220217670-220217788) | |
| 94-219, gnl|galGal2|chr19 (6425567-6425429) | |
| 94-219, gnl|hg17|chr17 (19399684-19399822) | |
| 94-219, gnl|Hg17|chr17 (19399699-19399825) | |
| 94-219, gnl|loxAfr1|scaffold_4756 (78052-77914) | |
| 94-219, gnl|mm7|chr11 (61444517-61444379) | |
| 94-219, gnl|Mm7|chr11 (61444500-61444377) | |
| 94-219, gnl|monDom2|scaffold_86 (4903524-4903386) | |
| 94-219, gnl|oryCun1|scaffold_159561 (14893-15029) | |
| 94-219, gnl|panTro1|chr19 (19727833-19727971) | |
| 94-219, gnl|rheMac2|chr16 (19107220-19107359) | |
| 94-219, gnl|rn3|chr10 (47546529-47546391) | |
| 94-219, gnl|tetNig1|chrUn_random (118943310-118943192) | |
| 94-219, gnl|xenTro1|scaffold_375 (1034485-1034620) | |
| 277-386, gnl|bosTau2|chr19 (24719300-24719191) | |
| 277-386, gnl|canFam2|chr5 (43660074-43659973) | |
| 277-386, gnl|danRer3|chrUn (13149158-13149258) | |
| 277-386, gnl|dasNov1|scaffold_95040 (3214-3113) | |
| 277-386, gnl|echTel1|scaffold_223442 (2542-2439) | |
| 277-386, gnl|fr1|chrUn (220217922-220218025) | |
| 277-386, gnl|galGal2|chr19 (6425060-6424969) | |
| 277-386, gnl|hg17|chr17 (19404082-19404183) | |
| 277-386, gnl|Hg17|chr17 (19404092-19404201) | |
| 277-386, gnl|loxAfr1|scaffold_4756 (75332-75231) | |
| 277-386, gnl|mm7|chr11 (61441198-61441098) | |
| 277-386, gnl|Mm7|chr11 (61441187-61441078) | |
| 277-386, gnl|monDom2|scaffold_86 (4898225-4898126) | |
| 277-386, gnl|oryCun1|scaffold_159561 (15988-16088) | |
| 277-386, gnl|panTro1|chr19 (19731858-19731959) | |
| 277-386, gnl|rheMac2|chr16 (19111608-19111709) | |
| 277-386, gnl|rn3|chr10 (47543614-47543514) | |
| 277-386, gnl|tetNig1|chrUn_random (118943037-118942934) | |
| 527-667, gnl|bosTau2|chr19 (24715179-24715039) | |
| 527-667, gnl|Hg17|chr17 (19410995-19411135) | |
| 527-667, gnl|Mm7|chr11 (61434358-61434218) | |
| 836-1079, gnl|bosTau2|chr19 (24709782-24709539) | |
| 836-1079, gnl|canFam2|chr5 (43644315-43644020) | |
| 836-1079, gnl|dasNov1|scaffold_164025 (1697-1954) | |
| 836-1079, gnl|hg17|chr17 (19421229-19421492) | |
| 836-1079, gnl|Hg17|chr17 (19421228-19421467) | |
| 836-1079, gnl|loxAfr1|scaffold_139676 (779-1046) | |
| 836-1079, gnl|mm7|chr11 (61426091-61425856) | |
| 836-1079, gnl|Mm7|chr11 (61426090-61425852) | |
| 836-1079, gnl|oryCun1|scaffold_193236 (697-947) | |
| 836-1079, gnl|panTro1|chr19 (19749009-19749272) | |
| 836-1079, gnl|rheMac2|chr16 (19128573-19128836) | |
| 836-1079, gnl|rn3|chr10 (47528157-47527915) | |
| 1282-1428, gnl|bosTau2|chr19 (24709344-24709207) | |
| 1282-1428, gnl|Hg17|chr17 (19421700-19421830) | |
| 1282-1428, gnl|Mm7|chr11 (61425101-61424963) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-219, gnl|bosTau2|chr19 (24720384-24720258) | |
| 94-219, gnl|canFam2|chr5 (43664496-43664358) | |
| 94-219, gnl|danRer3|chrUn (13143943-13144073) | |
| 94-219, gnl|dasNov1|scaffold_95040 (7729-7591) | |
| 94-219, gnl|echTel1|scaffold_223442 (4427-4305) | |
| 94-219, gnl|fr1|chrUn (220217670-220217788) | |
| 94-219, gnl|galGal2|chr19 (6425567-6425429) | |
| 94-219, gnl|hg17|chr17 (19399684-19399822) | |
| 94-219, gnl|Hg17|chr17 (19399699-19399825) | |
| 94-219, gnl|loxAfr1|scaffold_4756 (78052-77914) | |
| 94-219, gnl|mm7|chr11 (61444517-61444379) | |
| 94-219, gnl|Mm7|chr11 (61444500-61444377) | |
| 94-219, gnl|monDom2|scaffold_86 (4903524-4903386) | |
| 94-219, gnl|oryCun1|scaffold_159561 (14893-15029) | |
| 94-219, gnl|panTro1|chr19 (19727833-19727971) | |
| 94-219, gnl|rheMac2|chr16 (19107220-19107359) | |
| 94-219, gnl|rn3|chr10 (47546529-47546391) | |
| 94-219, gnl|tetNig1|chrUn_random (118943310-118943192) | |
| 94-219, gnl|xenTro1|scaffold_375 (1034485-1034620) | |
| 277-386, gnl|bosTau2|chr19 (24719300-24719191) | |
| 277-386, gnl|canFam2|chr5 (43660074-43659973) | |
| 277-386, gnl|danRer3|chrUn (13149158-13149258) | |
| 277-386, gnl|dasNov1|scaffold_95040 (3214-3113) | |
| 277-386, gnl|echTel1|scaffold_223442 (2542-2439) | |
| 277-386, gnl|fr1|chrUn (220217922-220218025) | |
| 277-386, gnl|galGal2|chr19 (6425060-6424969) | |
| 277-386, gnl|hg17|chr17 (19404082-19404183) | |
| 277-386, gnl|Hg17|chr17 (19404092-19404201) | |
| 277-386, gnl|loxAfr1|scaffold_4756 (75332-75231) | |
| 277-386, gnl|mm7|chr11 (61441198-61441098) | |
| 277-386, gnl|Mm7|chr11 (61441187-61441078) | |
| 277-386, gnl|monDom2|scaffold_86 (4898225-4898126) | |
| 277-386, gnl|oryCun1|scaffold_159561 (15988-16088) | |
| 277-386, gnl|panTro1|chr19 (19731858-19731959) | |
| 277-386, gnl|rheMac2|chr16 (19111608-19111709) | |
| 277-386, gnl|rn3|chr10 (47543614-47543514) | |
| 277-386, gnl|tetNig1|chrUn_random (118943037-118942934) | |
| 527-667, gnl|bosTau2|chr19 (24715179-24715039) | |
| 527-667, gnl|Hg17|chr17 (19410995-19411135) | |
| 527-667, gnl|Mm7|chr11 (61434358-61434218) | |
| 836-1079, gnl|bosTau2|chr19 (24709782-24709539) | |
| 836-1079, gnl|canFam2|chr5 (43644315-43644020) | |
| 836-1079, gnl|dasNov1|scaffold_164025 (1697-1954) | |
| 836-1079, gnl|hg17|chr17 (19421229-19421492) | |
| 836-1079, gnl|Hg17|chr17 (19421228-19421467) | |
| 836-1079, gnl|loxAfr1|scaffold_139676 (779-1046) | |
| 836-1079, gnl|mm7|chr11 (61426091-61425856) | |
| 836-1079, gnl|Mm7|chr11 (61426090-61425852) | |
| 836-1079, gnl|oryCun1|scaffold_193236 (697-947) | |
| 836-1079, gnl|panTro1|chr19 (19749009-19749272) | |
| 836-1079, gnl|rheMac2|chr16 (19128573-19128836) | |
| 836-1079, gnl|rn3|chr10 (47528157-47527915) | |
| 1282-1428, gnl|bosTau2|chr19 (24709344-24709207) | |
| 1282-1428, gnl|Hg17|chr17 (19421700-19421830) | |
| 1282-1428, gnl|Mm7|chr11 (61425101-61424963) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| cje (0.165235) | |
| pla (0.133672) | |
| cov (0.132153) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| cje (0.165235) | |
| pla (0.133672) | |
| cov (0.132153) |