Non-Coding RNA Search

Ss1.1-Pig4-TMW8051D03.3

Sequence:


               
               TTGAGGGTAGCTGGAATCCTAGGCCCTTACGGTGTTGAAGACTCACGTATTCAGCCTCGT
GGAAGTTACCCTCGTGCTCCATGACATTCACTTCACGTTGCCCATTGCACTTGAACCTGC
ACCTCGCTAGGTGTCCTCGTTTCGCTGTGTAGGCATCTCAGTTCCCAAAGCAGCCTTACC
CTCCTCCTCTGCTGTGATCGCCTGTGACATCATTGCTTCCAGCAGCACATCCACAGCCTG
ATCCGAGTTTAGCCACCGTTAGTCTTCCTGTGGCTCCTGTATTCCCTGGGAAGAAAAAAA
AAAATGCACCAAACACGGGATCTTCGATGTCAGGAATTGAATGTTTGTCTAATTTGAACC
TCTCCTCTTCCTTTAATAGGTAGATCTCATTTGAAATTTCATATCCGAAACTCTGAAACC
GTCTCAGAATCGTCGTTTGACCACACAGAGTGTTTTAATAACACTTTTGGGGGGAGGGAG
CTATAAACAGTTCAGCATTAATGGAATCTATTTGAATTTCCACAGTGGTGAATATTTTTA
TTCTTGGGTCCTCCAGGAATGGATTTTCTGTTATGTCTGGTGTCTTTTTAAAACAACAAC
AACAACAAAACTGAAAACAACAACAACAACAAACAAAAAGCCTCTACAAACTCCATTAAT
TTTCCATGGGATCCAGAAATAAACTTTCCATATCTGTAAACTGTATGTCTGTGGAGTTTA
GTTCTTGTTTTAGATTTAAACAGAAAAAAAATCAGGAAGTATTATGGCAGTGTCTAGGCA
TCTTTAGGCTATTATATTTCTGTGCTTGGTCAGCATGAAAATTTCAGCCATAATTAAGAG
GTAAAACCTCTAAGCCGCAGAGAAGATATTTTTGCCCATAAGTTTGGAGATGCTCTTTGA
TGTGAAGTATCTTACGGAAAAATTGTTACTTGGTTCAATTCAGTTTTTCTGGAGTGAGGG
ACTTGATTTTTTTCTTTCTTTCTTTCTTTTCTTTTCCCAGTGCTGTTTGGCACAATGAGC
TTATATGTGTTTGGGGTTAAAAATCACCTGCAAAGGATGGTAGCCCAGGGTTTTGGGTGG
ACAGCCTGGTGGGCCTGATTAGAGCTGTCATTTCCTGGTCGTCACGAAATAACCACCCAC
AGTAGCATTGCGTATGTAGTGTAGGTGAGCTTTCTTAAAGCTATGTATTCTCGATTTCTT
TTCCTGTAAACATCCAGTGTACTGAGTCTGTATCATTCCTTAAGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGGGTAGCTGGAATCCTAGGCCCTTACGGTGTTGAAGACTCACGTATTCAGCCTCGT
GGAAGTTACCCTCGTGCTCCATGACATTCACTTCACGTTGCCCATTGCACTTGAACCTGC
ACCTCGCTAGGTGTCCTCGTTTCGCTGTGTAGGCATCTCAGTTCCCAAAGCAGCCTTACC
CTCCTCCTCTGCTGTGATCGCCTGTGACATCATTGCTTCCAGCAGCACATCCACAGCCTG
ATCCGAGTTTAGCCACCGTTAGTCTTCCTGTGGCTCCTGTATTCCCTGGGAAGAAAAAAA
AAAATGCACCAAACACGGGATCTTCGATGTCAGGAATTGAATGTTTGTCTAATTTGAACC
TCTCCTCTTCCTTTAATAGGTAGATCTCATTTGAAATTTCATATCCGAAACTCTGAAACC
GTCTCAGAATCGTCGTTTGACCACACAGAGTGTTTTAATAACACTTTTGGGGGGAGGGAG
CTATAAACAGTTCAGCATTAATGGAATCTATTTGAATTTCCACAGTGGTGAATATTTTTA
TTCTTGGGTCCTCCAGGAATGGATTTTCTGTTATGTCTGGTGTCTTTTTAAAACAACAAC
AACAACAAAACTGAAAACAACAACAACAACAAACAAAAAGCCTCTACAAACTCCATTAAT
TTTCCATGGGATCCAGAAATAAACTTTCCATATCTGTAAACTGTATGTCTGTGGAGTTTA
GTTCTTGTTTTAGATTTAAACAGAAAAAAAATCAGGAAGTATTATGGCAGTGTCTAGGCA
TCTTTAGGCTATTATATTTCTGTGCTTGGTCAGCATGAAAATTTCAGCCATAATTAAGAG
GTAAAACCTCTAAGCCGCAGAGAAGATATTTTTGCCCATAAGTTTGGAGATGCTCTTTGA
TGTGAAGTATCTTACGGAAAAATTGTTACTTGGTTCAATTCAGTTTTTCTGGAGTGAGGG
ACTTGATTTTTTTCTTTCTTTCTTTCTTTTCTTTTCCCAGTGCTGTTTGGCACAATGAGC
TTATATGTGTTTGGGGTTAAAAATCACCTGCAAAGGATGGTAGCCCAGGGTTTTGGGTGG
ACAGCCTGGTGGGCCTGATTAGAGCTGTCATTTCCTGGTCGTCACGAAATAACCACCCAC
AGTAGCATTGCGTATGTAGTGTAGGTGAGCTTTCTTAAAGCTATGTATTCTCGATTTCTT
TTCCTGTAAACATCCAGTGTACTGAGTCTGTATCATTCCTTAAGACAG

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-603, gnl|bosTau2|chr25 (19043522-19042908)
               

               
               1-603, gnl|Hg17|chr16 (22985125-22984515)
               

               
               1-603, gnl|Mm7|chr7 (117568825-117568266)
               


               
               373-596, gnl|bosTau2|chr22 (16215062-16215281)
               

               
               373-596, gnl|Hg17|chr16 (22984755-22984522)
               


               
               631-869, gnl|bosTau2|chr22 (16215272-16215511)
               

               
               631-869, gnl|Hg17|chr16 (22984531-22984291)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-603, gnl|bosTau2|chr25 (19043522-19042908)
               

               
               1-603, gnl|Hg17|chr16 (22985125-22984515)
               

               
               1-603, gnl|Mm7|chr7 (117568825-117568266)
               


               
               373-596, gnl|bosTau2|chr22 (16215062-16215281)
               

               
               373-596, gnl|Hg17|chr16 (22984755-22984522)
               


               
               631-869, gnl|bosTau2|chr22 (16215272-16215511)
               

               
               631-869, gnl|Hg17|chr16 (22984531-22984291)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	1-603, gnl\|bosTau2\|chr25 (19043522-19042908)
	1-603, gnl\|Hg17\|chr16 (22985125-22984515)
	1-603, gnl\|Mm7\|chr7 (117568825-117568266)

	373-596, gnl\|bosTau2\|chr22 (16215062-16215281)
	373-596, gnl\|Hg17\|chr16 (22984755-22984522)

	631-869, gnl\|bosTau2\|chr22 (16215272-16215511)
	631-869, gnl\|Hg17\|chr16 (22984531-22984291)