Non-Coding RNA Search

Ss1.1-Pig4-TMW8051D12.5

Sequence:


               
               ACAAAGATTTTAATGAGAAAAAAGTCACAAAAACCAAACCGAGGTTGTGTTATATACGGG
TTTAGAATAATCAGTCATTCTCTGGGTACAATTTAATTATTTTCAAGTTATACAGATTTG
GTGGTGTCTTTCATTTCTTACATTTTTGATTATAGATCTGCTACAGAACTTTTTGAGGCT
TACAGCATGGCAGCAATGACATTCAATCCTCCTGTTGAATCTTCAAACTCCAAAAGGAAA
GATAAAGTTTTACAAGGGGATTCATTTTTGAATGAAGATTTAAATCAGCTAATCAAAAGA
TATTGCAATGAAGATGCTACTCCGTTGCCTCTGGATTTCACCAAGTATTTGGAAACATCA
CCGGAGCAGGTGATGTGAGTCCTCGGGGCTGTTTAGTTGACTTGGTGAGCTTCTTGAGTT
CACTTGCCAAAGAGATGCCTTTTCTTTTGTCTTCTCGGGATGCCTGCACCTGTTCCTTTA
GCTTAAGGATGAATTTTCCTGCACGTGAAAAGAGGCACAGGAAAATCAAGACCATAAGAT
TGCTTTTTATCATTCAGTGACTCTTTATAACCAAATAAACATTTTTATTGCAACACCACA
ATGGAAATAACATTCTAAATTGGGTGTATATAATTTTATGAAGATTTTTTGAGAAAAGGA
AGAATAGCTTGCAATTGGATACCAGGTTCTTTGACTCTTACTAGATGGTATGCTTCAAGA
AGTAACCTAATTTCAGAGTTCCTCTGTGGCTCAGCAGGTTTAAGGACCTGGTGGTGGTCC
TGGAGAGGCTCTGATCACTGCTCTGGTGCAGGTTTGATCCCAAGGCCAGGAACTTCTGCA
TGCTGCAGGAGCAGCAAAGAAAAGAAAAAGAAGTAATCTAATTTGGCCTATGTGAAAAAG
AATGAGGGGCGTCATGGCTACTGTCAAAGTCTGAGTGTGATTCTAGTCTCTTCGAAGTTC
TTTGCATTTTCTGTCATGCCCTGGAGGTTAATGGGGGGGGGGGGGGGGAAAGAATTGCTC
CCAGGTAGAAAAAAGTCTGAGACTTTACTATTCTGTTTTAAGGATAAACAGTACCCAGTG
AGGGGCTTCTCCCACTGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAGATTTTAATGAGAAAAAAGTCACAAAAACCAAACCGAGGTTGTGTTATATACGGG
TTTAGAATAATCAGTCATTCTCTGGGTACAATTTAATTATTTTCAAGTTATACAGATTTG
GTGGTGTCTTTCATTTCTTACATTTTTGATTATAGATCTGCTACAGAACTTTTTGAGGCT
TACAGCATGGCAGCAATGACATTCAATCCTCCTGTTGAATCTTCAAACTCCAAAAGGAAA
GATAAAGTTTTACAAGGGGATTCATTTTTGAATGAAGATTTAAATCAGCTAATCAAAAGA
TATTGCAATGAAGATGCTACTCCGTTGCCTCTGGATTTCACCAAGTATTTGGAAACATCA
CCGGAGCAGGTGATGTGAGTCCTCGGGGCTGTTTAGTTGACTTGGTGAGCTTCTTGAGTT
CACTTGCCAAAGAGATGCCTTTTCTTTTGTCTTCTCGGGATGCCTGCACCTGTTCCTTTA
GCTTAAGGATGAATTTTCCTGCACGTGAAAAGAGGCACAGGAAAATCAAGACCATAAGAT
TGCTTTTTATCATTCAGTGACTCTTTATAACCAAATAAACATTTTTATTGCAACACCACA
ATGGAAATAACATTCTAAATTGGGTGTATATAATTTTATGAAGATTTTTTGAGAAAAGGA
AGAATAGCTTGCAATTGGATACCAGGTTCTTTGACTCTTACTAGATGGTATGCTTCAAGA
AGTAACCTAATTTCAGAGTTCCTCTGTGGCTCAGCAGGTTTAAGGACCTGGTGGTGGTCC
TGGAGAGGCTCTGATCACTGCTCTGGTGCAGGTTTGATCCCAAGGCCAGGAACTTCTGCA
TGCTGCAGGAGCAGCAAAGAAAAGAAAAAGAAGTAATCTAATTTGGCCTATGTGAAAAAG
AATGAGGGGCGTCATGGCTACTGTCAAAGTCTGAGTGTGATTCTAGTCTCTTCGAAGTTC
TTTGCATTTTCTGTCATGCCCTGGAGGTTAATGGGGGGGGGGGGGGGGAAAGAATTGCTC
CCAGGTAGAAAAAAGTCTGAGACTTTACTATTCTGTTTTAAGGATAAACAGTACCCAGTG
AGGGGCTTCTCCCACTGCCAAAAA

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

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               77-239, gnl|bosTau2|chr18 (24491088-24490929)
               

               
               77-239, gnl|canFam2|chr28 (11487618-11487736)
               

               
               77-239, gnl|danRer3|chrNA (7431912-7431806)
               

               
               77-239, gnl|dasNov1|scaffold_69748 (630-552)
               

               
               77-239, gnl|echTel1|scaffold_290756 (49976-50101)
               

               
               77-239, gnl|galGal2|chr6 (18978024-18978132)
               

               
               77-239, gnl|hg17|chr10 (96084364-96084487)
               

               
               77-239, gnl|Hg17|chr10 (96084525-96084382)
               

               
               77-239, gnl|loxAfr1|scaffold_46309 (6573-6697)
               

               
               77-239, gnl|mm7|chr19 (38490955-38491078)
               

               
               77-239, gnl|monDom2|scaffold_14 (28249695-28249576)
               

               
               77-239, gnl|panTro1|chr8 (97840084-97840207)
               

               
               77-239, gnl|rheMac2|chr9 (93795335-93795455)
               

               
               77-239, gnl|rn3|chr1 (243206458-243206575)
               

               
               77-239, gnl|xenTro1|scaffold_180 (1265973-1266074)
               


               
               241-733, gnl|bosTau2|chr18 (24490579-24490083)
               

               
               241-733, gnl|Hg17|chr10 (96084052-96083354)
               


               
               868-1090, gnl|bosTau2|chr18 (24490099-24489880)
               

               
               868-1090, gnl|Hg17|chr10 (96083370-96083154)
               

               
               868-1090, gnl|Mm7|chr19 (38489322-38489145)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-239, gnl|bosTau2|chr18 (24491088-24490929)
               

               
               77-239, gnl|canFam2|chr28 (11487618-11487736)
               

               
               77-239, gnl|danRer3|chrNA (7431912-7431806)
               

               
               77-239, gnl|dasNov1|scaffold_69748 (630-552)
               

               
               77-239, gnl|echTel1|scaffold_290756 (49976-50101)
               

               
               77-239, gnl|galGal2|chr6 (18978024-18978132)
               

               
               77-239, gnl|hg17|chr10 (96084364-96084487)
               

               
               77-239, gnl|Hg17|chr10 (96084525-96084382)
               

               
               77-239, gnl|loxAfr1|scaffold_46309 (6573-6697)
               

               
               77-239, gnl|mm7|chr19 (38490955-38491078)
               

               
               77-239, gnl|monDom2|scaffold_14 (28249695-28249576)
               

               
               77-239, gnl|panTro1|chr8 (97840084-97840207)
               

               
               77-239, gnl|rheMac2|chr9 (93795335-93795455)
               

               
               77-239, gnl|rn3|chr1 (243206458-243206575)
               

               
               77-239, gnl|xenTro1|scaffold_180 (1265973-1266074)
               


               
               241-733, gnl|bosTau2|chr18 (24490579-24490083)
               

               
               241-733, gnl|Hg17|chr10 (96084052-96083354)
               


               
               868-1090, gnl|bosTau2|chr18 (24490099-24489880)
               

               
               868-1090, gnl|Hg17|chr10 (96083370-96083154)
               

               
               868-1090, gnl|Mm7|chr19 (38489322-38489145)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	77-239, gnl\|bosTau2\|chr18 (24491088-24490929)
	77-239, gnl\|canFam2\|chr28 (11487618-11487736)
	77-239, gnl\|danRer3\|chrNA (7431912-7431806)
	77-239, gnl\|dasNov1\|scaffold_69748 (630-552)
	77-239, gnl\|echTel1\|scaffold_290756 (49976-50101)
	77-239, gnl\|galGal2\|chr6 (18978024-18978132)
	77-239, gnl\|hg17\|chr10 (96084364-96084487)
	77-239, gnl\|Hg17\|chr10 (96084525-96084382)
	77-239, gnl\|loxAfr1\|scaffold_46309 (6573-6697)
	77-239, gnl\|mm7\|chr19 (38490955-38491078)
	77-239, gnl\|monDom2\|scaffold_14 (28249695-28249576)
	77-239, gnl\|panTro1\|chr8 (97840084-97840207)
	77-239, gnl\|rheMac2\|chr9 (93795335-93795455)
	77-239, gnl\|rn3\|chr1 (243206458-243206575)
	77-239, gnl\|xenTro1\|scaffold_180 (1265973-1266074)

	241-733, gnl\|bosTau2\|chr18 (24490579-24490083)
	241-733, gnl\|Hg17\|chr10 (96084052-96083354)

	868-1090, gnl\|bosTau2\|chr18 (24490099-24489880)
	868-1090, gnl\|Hg17\|chr10 (96083370-96083154)
	868-1090, gnl\|Mm7\|chr19 (38489322-38489145)