Non-Coding RNA Search

Ss1.1-Pig4-TMW8051D14.3

Sequence:


               
               GCGTCAGCCCCAGCTCCCTCGGTCCCAGCCTGGCAGGGCCGCTCCATTGGCACAACCAAA
CTTCGCCTGGTGGAATTCTCAGCTTTCCTCGAACAGCAGCGAGACCCGGACTCGTACAAC
AAACACCTCTTCGTGCACATTGGGCATGCCAACCATTCTTACAGTGACCCATTGCTCGAG
TCAGTGGACATTCGTCAGATTTATGACAAATTTCCTGAAAAGAAAGGTGGCTTAAAGGAA
CTGTTTGGAAAGGGCCCTCAAAATGCCTTCTTCCTCGTAAAATTCTGGGCCGATTTAAAC
TGCAATATTCAAGATGATGCCGGGGCTTTTTATGGTGTAACGAGTCAATATGAGAGTTCT
GAAAATATGACAGTCACGTGTTCCACCAAAGTTTGCTCCTTTGGGAAGCAAGTAGTAGAA
AAAGTAGAGACGGAATACGCGAGGTTTGAGAATGGCCGATTTGTATACCGAATAAACCGC
TCCCCGATGTGTGAATATATGATCAACTTCATCCACAAGCTCAAACACTTACCAGAGAAA
TATATGATGAACAGTGTTTTGGAAAACTTCACAATTTTATTGGTGGTAACAAACAGGGAT
ACACAAGAAACTCTCCTGTGCATGGCCTGTGTATTTGAAGTTTCAAATAGTGAACATGGA
GCACAGCATCACATTTACAGGCTTGTAAAGGACTAACCATGGTTATTTATATATATAGAT
ATCTGTATATATACACACACACATATGTGCGCACACACACACACACTCTCCATGATCCAA
CGACTGACTGTAAACCTCACCACGCAGGGGTGCTGCCCTGGCCCTGAGGTCACCCCAACT
TTTCTAAATCCTGTTTGAGTGAAGTCATTTTTTCATGTGTTCATACTATCATTCTAGCTG
TGAAGTTCTGGTACAGTTGTAAAAAGAGAAATTGAGTTGTTTCTGTGTGTTCTTCAGATC
CACAGCCCACAGTTCCTCAGAAGGGTGAACCGTGAGAACCCAGGTCTCTGTCTGCAGAGA
GCTGTGTCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCAGCCCCAGCTCCCTCGGTCCCAGCCTGGCAGGGCCGCTCCATTGGCACAACCAAA
CTTCGCCTGGTGGAATTCTCAGCTTTCCTCGAACAGCAGCGAGACCCGGACTCGTACAAC
AAACACCTCTTCGTGCACATTGGGCATGCCAACCATTCTTACAGTGACCCATTGCTCGAG
TCAGTGGACATTCGTCAGATTTATGACAAATTTCCTGAAAAGAAAGGTGGCTTAAAGGAA
CTGTTTGGAAAGGGCCCTCAAAATGCCTTCTTCCTCGTAAAATTCTGGGCCGATTTAAAC
TGCAATATTCAAGATGATGCCGGGGCTTTTTATGGTGTAACGAGTCAATATGAGAGTTCT
GAAAATATGACAGTCACGTGTTCCACCAAAGTTTGCTCCTTTGGGAAGCAAGTAGTAGAA
AAAGTAGAGACGGAATACGCGAGGTTTGAGAATGGCCGATTTGTATACCGAATAAACCGC
TCCCCGATGTGTGAATATATGATCAACTTCATCCACAAGCTCAAACACTTACCAGAGAAA
TATATGATGAACAGTGTTTTGGAAAACTTCACAATTTTATTGGTGGTAACAAACAGGGAT
ACACAAGAAACTCTCCTGTGCATGGCCTGTGTATTTGAAGTTTCAAATAGTGAACATGGA
GCACAGCATCACATTTACAGGCTTGTAAAGGACTAACCATGGTTATTTATATATATAGAT
ATCTGTATATATACACACACACATATGTGCGCACACACACACACACTCTCCATGATCCAA
CGACTGACTGTAAACCTCACCACGCAGGGGTGCTGCCCTGGCCCTGAGGTCACCCCAACT
TTTCTAAATCCTGTTTGAGTGAAGTCATTTTTTCATGTGTTCATACTATCATTCTAGCTG
TGAAGTTCTGGTACAGTTGTAAAAAGAGAAATTGAGTTGTTTCTGTGTGTTCTTCAGATC
CACAGCCCACAGTTCCTCAGAAGGGTGAACCGTGAGAACCCAGGTCTCTGTCTGCAGAGA
GCTGTGTCTCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34365243|emb|CAE45959.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34365243|emb|CAE45959.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               609-728, - strand, RNAz p=0.595082
               

               
               919-1032, - strand, RNAz p=0.541836

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               609-728, - strand, RNAz p=0.595082
               

               
               919-1032, - strand, RNAz p=0.541836

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               575-1032, gnl|bosTau2|chr15 (25018664-25018215)
               

               
               575-1032, gnl|Hg17|chr11 (12915224-12915677)
               

               
               575-1032, gnl|Mm7|chr7 (108814555-108814993)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               575-1032, gnl|bosTau2|chr15 (25018664-25018215)
               

               
               575-1032, gnl|Hg17|chr11 (12915224-12915677)
               

               
               575-1032, gnl|Mm7|chr7 (108814555-108814993)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               bla (0.621736)
               

               
               ldo (0.485013)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               ldo (0.485013)
               

               
               tes (0.415628)
               

               
               ste (0.405625)
               

               
               pla (0.401016)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)

	609-728, - strand, RNAz p=0.595082
	919-1032, - strand, RNAz p=0.541836

	575-1032, gnl\|bosTau2\|chr15 (25018664-25018215)
	575-1032, gnl\|Hg17\|chr11 (12915224-12915677)
	575-1032, gnl\|Mm7\|chr7 (108814555-108814993)

	bla (0.621736)
	ldo (0.485013)
	tes (0.415628)
	ste (0.405625)
	pla (0.401016)
	vin (0.332557)
	tbr (0.308356)
	isp (0.300752)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	ret (0.128733)
	pgl (0.118483)