Non-Coding RNA Search

Ss1.1-Pig4-TMW8051E04.5.5

Sequence:


               
               TTGTGTAGATGGCCTTTGCTCCCTGCCCTGCTAGGGACCCTACTTCTCTAGTCCAGGCCT
GCAGCTTGCTTGTCACTCAGGCAAAAGCAGAGGGGAGGAAGCTGACCCCCTAGCCTGCAG
AAGTGATCCATTCCACCTAAGGGTATGTTGGGAGCTGTAATGGTCTGTGGGTGAACTTAT
CCCAGCCTTGCTTCCTGAACCCTTGGTCCTAGCCAAAAGTGATAGACTCGCCCAGTCCAC
TGATTTCTTCCTGTTACTTTAGATATTTTTTTTCTCTGCTCTTGTGACTTAGAAGTTCCA
TTCTGGGGTCTGGAGTGGCTCTTGGTGAGAGTTCTGGGGTGGGGCTCAGCTCCTAAGAGG
CAAGGATACTAGGTCCTTGGACTTCTTTTTATGCTACCACTGCTGCTTGGTGGAGGTAAC
AAGACTTGTACTCTGCCTCCTAATTGGAAGTGTCCCTTTGCTCCCTGACTTCTTATTCCA
GGCCAGTTTTTCCATGGCTTCTTGAGCAAGGTGGGGTCCAAAGGAGGGAGGCCTTCACAC
TGGCCCCCAGGGCCAGCCCAGCCCAGTGTGCATCTTCTTGCTTCCCTGTCTCTTTCCCCT
CAGCTGTCCCCCTTTGCCAGCTGTCCGAGTCCTTTCTACACCAAAGCAAAGAATGGCCTC
AGCGGGGAGTAAAGAAGGTGCCCTGTGGTTAAGGGGCCCCCCGGTGCTACTGGACATTTC
AAGCTGCCGGAGCCCTGGGGTTGGTCAGTCAGCCTTGGAAAGAAACTATCTTGACAGTTT
GAAAAACAACCAAAGAAAGGGAGCGAGGACTACGGCTGCGTGCCCTCCACTTGCCAGCTC
CCGCCGTGCAGGAAGCAGAGCAGAGATGTGCAGCCCTCGTGTCAGCTGGGCCAGGCTGGT
TGCCTTCCACGCTGGCCCCAGGAGCCCGCTTATCCTGGGCTTCCACCCAGCTGATGAGAA
GAGCCTCTGGAAGCCAGATGCGAATGCCCTGTAGATGGAGGCCCAGCCCTGACAATCCTT
TTGAGCCGACCCGAACTCTGGCCTTGGGGACCATGCTTGCGAGAAGACAGGAACAGCAGG
GCTCCCAGAGGCTGAAGGGAACCCGTGTGTTTAACTCTCCACCGACATCTGTGTGCAAAC
GTGTTGGTAAAGCGCCCCACCTGGCTGTCCCGAGAGAGCCTGAGCCGTGTTAAGAGCCCT
GTTGCTTCCCCCTCCAGGCAGATCTGCACGTTGCCCTCATTCAGACCAGCTCTGAGACGA
GAAGGAAACTGGGTCCAACATAAGAGGGAGCTGGTTCCAGTCCTGGCAGGTGAAAGAGTG
TGGGGCATCCTTTCCTGGCCCATCTCCACTCTCCTTGAAGCCTGTACTCAGGTTGCCTTG
AATGTGGACTTTGGGAGAGCCAGGGCTCAGAGGACCAGAGCAGGCTTCCAGGTGGCACTC
GTGGAATGGCCTGGCCCTCTGCCTGCCATAAGCTCTGTCCCCAGTGTCAGGGAGTAGAGG
CTGGGCTGTGAGAGTGCTGCCGCCTCTGTATTGTTCTTCTAATGCACTGTAGAAATTGTA
TGTAATGTATTTAAATCAATGCAGATGTATGAATAACAAGTCCAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTAGATGGCCTTTGCTCCCTGCCCTGCTAGGGACCCTACTTCTCTAGTCCAGGCCT
GCAGCTTGCTTGTCACTCAGGCAAAAGCAGAGGGGAGGAAGCTGACCCCCTAGCCTGCAG
AAGTGATCCATTCCACCTAAGGGTATGTTGGGAGCTGTAATGGTCTGTGGGTGAACTTAT
CCCAGCCTTGCTTCCTGAACCCTTGGTCCTAGCCAAAAGTGATAGACTCGCCCAGTCCAC
TGATTTCTTCCTGTTACTTTAGATATTTTTTTTCTCTGCTCTTGTGACTTAGAAGTTCCA
TTCTGGGGTCTGGAGTGGCTCTTGGTGAGAGTTCTGGGGTGGGGCTCAGCTCCTAAGAGG
CAAGGATACTAGGTCCTTGGACTTCTTTTTATGCTACCACTGCTGCTTGGTGGAGGTAAC
AAGACTTGTACTCTGCCTCCTAATTGGAAGTGTCCCTTTGCTCCCTGACTTCTTATTCCA
GGCCAGTTTTTCCATGGCTTCTTGAGCAAGGTGGGGTCCAAAGGAGGGAGGCCTTCACAC
TGGCCCCCAGGGCCAGCCCAGCCCAGTGTGCATCTTCTTGCTTCCCTGTCTCTTTCCCCT
CAGCTGTCCCCCTTTGCCAGCTGTCCGAGTCCTTTCTACACCAAAGCAAAGAATGGCCTC
AGCGGGGAGTAAAGAAGGTGCCCTGTGGTTAAGGGGCCCCCCGGTGCTACTGGACATTTC
AAGCTGCCGGAGCCCTGGGGTTGGTCAGTCAGCCTTGGAAAGAAACTATCTTGACAGTTT
GAAAAACAACCAAAGAAAGGGAGCGAGGACTACGGCTGCGTGCCCTCCACTTGCCAGCTC
CCGCCGTGCAGGAAGCAGAGCAGAGATGTGCAGCCCTCGTGTCAGCTGGGCCAGGCTGGT
TGCCTTCCACGCTGGCCCCAGGAGCCCGCTTATCCTGGGCTTCCACCCAGCTGATGAGAA
GAGCCTCTGGAAGCCAGATGCGAATGCCCTGTAGATGGAGGCCCAGCCCTGACAATCCTT
TTGAGCCGACCCGAACTCTGGCCTTGGGGACCATGCTTGCGAGAAGACAGGAACAGCAGG
GCTCCCAGAGGCTGAAGGGAACCCGTGTGTTTAACTCTCCACCGACATCTGTGTGCAAAC
GTGTTGGTAAAGCGCCCCACCTGGCTGTCCCGAGAGAGCCTGAGCCGTGTTAAGAGCCCT
GTTGCTTCCCCCTCCAGGCAGATCTGCACGTTGCCCTCATTCAGACCAGCTCTGAGACGA
GAAGGAAACTGGGTCCAACATAAGAGGGAGCTGGTTCCAGTCCTGGCAGGTGAAAGAGTG
TGGGGCATCCTTTCCTGGCCCATCTCCACTCTCCTTGAAGCCTGTACTCAGGTTGCCTTG
AATGTGGACTTTGGGAGAGCCAGGGCTCAGAGGACCAGAGCAGGCTTCCAGGTGGCACTC
GTGGAATGGCCTGGCCCTCTGCCTGCCATAAGCTCTGTCCCCAGTGTCAGGGAGTAGAGG
CTGGGCTGTGAGAGTGCTGCCGCCTCTGTATTGTTCTTCTAATGCACTGTAGAAATTGTA
TGTAATGTATTTAAATCAATGCAGATGTATGAATAACAAGTCCAATTC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               771-917, - strand, RNAz p=0.913975
               

               
               774-975, - strand, RNAz p=0.916314
               

               
               1220-1437, - strand, RNAz p=0.984044
               

               
               1319-1437, - strand, RNAz p=0.568462

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-917, - strand, RNAz p=0.913975
               

               
               774-975, - strand, RNAz p=0.916314
               

               
               1220-1437, - strand, RNAz p=0.984044
               

               
               1319-1437, - strand, RNAz p=0.568462

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               835-1067, - strand, RNAmicro p=0.995832
               

               
               831-913, + strand, RNAmicro p=0.939603

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               835-1067, - strand, RNAmicro p=0.995832
               

               
               831-913, + strand, RNAmicro p=0.939603

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-1608, gnl|bosTau2|chr26 (10449857-10448250)
               

               
               1-1608, gnl|canFam2|chr28 (13917338-13919147)
               

               
               1-1608, gnl|dasNov1|scaffold_31067 (12152-10341)
               

               
               1-1608, gnl|echTel1|scaffold_277259 (34202-35918)
               

               
               1-1608, gnl|hg17|chr10 (99423893-99425728)
               

               
               1-1608, gnl|Hg17|chr10 (99424169-99425795)
               

               
               1-1608, gnl|loxAfr1|scaffold_11731 (8660-6781)
               

               
               1-1608, gnl|mm7|chr19 (42014210-42015800)
               

               
               1-1608, gnl|Mm7|chr19 (42014428-42015867)
               

               
               1-1608, gnl|monDom2|scaffold_14 (24793360-24791239)
               

               
               1-1608, gnl|oryCun1|scaffold_185475 (9330-7642)
               

               
               1-1608, gnl|panTro1|chr8 (101160558-101162394)
               

               
               1-1608, gnl|rheMac2|chr9 (97259800-97261623)
               

               
               1-1608, gnl|rn3|chr1 (248994940-248993333)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1608, gnl|bosTau2|chr26 (10449857-10448250)
               

               
               1-1608, gnl|canFam2|chr28 (13917338-13919147)
               

               
               1-1608, gnl|dasNov1|scaffold_31067 (12152-10341)
               

               
               1-1608, gnl|echTel1|scaffold_277259 (34202-35918)
               

               
               1-1608, gnl|hg17|chr10 (99423893-99425728)
               

               
               1-1608, gnl|Hg17|chr10 (99424169-99425795)
               

               
               1-1608, gnl|loxAfr1|scaffold_11731 (8660-6781)
               

               
               1-1608, gnl|mm7|chr19 (42014210-42015800)
               

               
               1-1608, gnl|Mm7|chr19 (42014428-42015867)
               

               
               1-1608, gnl|monDom2|scaffold_14 (24793360-24791239)
               

               
               1-1608, gnl|oryCun1|scaffold_185475 (9330-7642)
               

               
               1-1608, gnl|panTro1|chr8 (101160558-101162394)
               

               
               1-1608, gnl|rheMac2|chr9 (97259800-97261623)
               

               
               1-1608, gnl|rn3|chr1 (248994940-248993333)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               eli (0.303628)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.303628)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	771-917, - strand, RNAz p=0.913975
	774-975, - strand, RNAz p=0.916314
	1220-1437, - strand, RNAz p=0.984044
	1319-1437, - strand, RNAz p=0.568462

	835-1067, - strand, RNAmicro p=0.995832
	831-913, + strand, RNAmicro p=0.939603

	1-1608, gnl\|bosTau2\|chr26 (10449857-10448250)
	1-1608, gnl\|canFam2\|chr28 (13917338-13919147)
	1-1608, gnl\|dasNov1\|scaffold_31067 (12152-10341)
	1-1608, gnl\|echTel1\|scaffold_277259 (34202-35918)
	1-1608, gnl\|hg17\|chr10 (99423893-99425728)
	1-1608, gnl\|Hg17\|chr10 (99424169-99425795)
	1-1608, gnl\|loxAfr1\|scaffold_11731 (8660-6781)
	1-1608, gnl\|mm7\|chr19 (42014210-42015800)
	1-1608, gnl\|Mm7\|chr19 (42014428-42015867)
	1-1608, gnl\|monDom2\|scaffold_14 (24793360-24791239)
	1-1608, gnl\|oryCun1\|scaffold_185475 (9330-7642)
	1-1608, gnl\|panTro1\|chr8 (101160558-101162394)
	1-1608, gnl\|rheMac2\|chr9 (97259800-97261623)
	1-1608, gnl\|rn3\|chr1 (248994940-248993333)

	eli (0.303628)
	lnt (0.284616)
	fce (0.271592)
	jca (0.22792)
	nbm (0.198649)
	nep (0.183925)
	nco (0.161734)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)