Ss1.1-Pig4-TMW8051E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTCTGGGCGTGCTCGAGCCCAAGGCAGGATCGGGGTCCCCGCCTTCCAGTCCGAAAAT CCCGCCAAGGGAGCCGAAGAGCAGAGGAAAAGCCAAAGTGGGGAGAGGGGACGAAAGAGA CCTGTGAGTCACCGTGTGGCAGTCAGGGAGCAGCCGCTTCCGCGAGCAGCAGCGACTGGG GTACCTGGACTCCAGGCAGGAAACCTCGCCCCATCAACAAAGGCAGCCTGAGCGCGCACC ACACGTTTGCAACTCCAAAATGCAGACCCCACAGTTCCTGCAGCAGCGTCGAAAATTTGC AGCTGCCTTCTTGGCATTCATTTTCCTTTTGGCAGTTGTGGATACCGCTGAAGCAGGAAA GAAAGAGAAACCAGAAAAAAAGGTGAAGAAGTCTGACTGTGGAGAATGGCAGTGGAGTGT GTGTGTGCCCACCAGTGGGGACTGTGGGCTGGGTACCCGGGAGGGCACCCGGACTGGAGC TGAGTGTAAACAAACCATGAAGACCCAGAGATGTAAGATCCCGTGCAACTGGAAAAAGCA GTTTGGAGCGGAGTGCAAATACCAGTTCCAGGCCTGGGGCGAATGTGACCTGAACACGGC ATTGAAGACCAGAACCGGAAGCCTGAAGCGAGCTCTCCACAACGCCGACTGCCAGAAGAC AGTCACCATCTCCAAGCCCTGTGGCAAAGTGACTAAGCCCAAACCTCAAGCAGAATCTAA GAAGAAGAAAAAGGAAGGCAAGAAACAGGAGAAGATGCTGGACTAAATGACACCACCTTC TGTGGAACAGGAAAAGGACGTCAGCAAACAGGATCAGTTAACTATTGCATTTATACCTAC CGTAGGCTTTTTATTCCAAAATTATCTATAGCTTAAGTACACAATAGGCAGAAATAAAAA GAAAAGAAAAATTTTGTAGTAGCATTTTTAAAATATATACCATAGTACAATTAGGGGCTT ATAATAAAGGACTGTAATCCTATTTAGAATGTTGACTTATAGTACATGATAAATGATAGG AAATTGAGGTAAGTTTTTTGAAGTCATGTGATATTTTACATTTAAAATCTTTTTTTTACA TTTTTTTTTTCTTTTGGCAGCAATTTAAATGTTATGACCATGTAAACTACTTTTCTTGTT AGGTAATTTTTTTCACCTAGACTTTTTTTTTCCCAATTAAGAAAAATATATACTAAACAA AGCAACAATAAAATATGATTATCCTATTTGAGGAAAATATGTTTTCTGCCAGTGGATTTA AAAAACTTTTAGTCTGCAAAATGAGGGGAGGGGTCAGAGCATGTCCTAGTTCAATGTTGA TTTCTTTTTTTAAAGAAAAGCATTAAAACATGAAATTGTTTCACTTTGGCAGAAATATTT GCTCTCTTGATGAAATTATTTTTCCTTATGAGCAAAAAAAAAAAAAAAAAGGACTAGGAA AATAAATCAAGGTGATGTCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTCTGGGCGTGCTCGAGCCCAAGGCAGGATCGGGGTCCCCGCCTTCCAGTCCGAAAAT CCCGCCAAGGGAGCCGAAGAGCAGAGGAAAAGCCAAAGTGGGGAGAGGGGACGAAAGAGA CCTGTGAGTCACCGTGTGGCAGTCAGGGAGCAGCCGCTTCCGCGAGCAGCAGCGACTGGG GTACCTGGACTCCAGGCAGGAAACCTCGCCCCATCAACAAAGGCAGCCTGAGCGCGCACC ACACGTTTGCAACTCCAAAATGCAGACCCCACAGTTCCTGCAGCAGCGTCGAAAATTTGC AGCTGCCTTCTTGGCATTCATTTTCCTTTTGGCAGTTGTGGATACCGCTGAAGCAGGAAA GAAAGAGAAACCAGAAAAAAAGGTGAAGAAGTCTGACTGTGGAGAATGGCAGTGGAGTGT GTGTGTGCCCACCAGTGGGGACTGTGGGCTGGGTACCCGGGAGGGCACCCGGACTGGAGC TGAGTGTAAACAAACCATGAAGACCCAGAGATGTAAGATCCCGTGCAACTGGAAAAAGCA GTTTGGAGCGGAGTGCAAATACCAGTTCCAGGCCTGGGGCGAATGTGACCTGAACACGGC ATTGAAGACCAGAACCGGAAGCCTGAAGCGAGCTCTCCACAACGCCGACTGCCAGAAGAC AGTCACCATCTCCAAGCCCTGTGGCAAAGTGACTAAGCCCAAACCTCAAGCAGAATCTAA GAAGAAGAAAAAGGAAGGCAAGAAACAGGAGAAGATGCTGGACTAAATGACACCACCTTC TGTGGAACAGGAAAAGGACGTCAGCAAACAGGATCAGTTAACTATTGCATTTATACCTAC CGTAGGCTTTTTATTCCAAAATTATCTATAGCTTAAGTACACAATAGGCAGAAATAAAAA GAAAAGAAAAATTTTGTAGTAGCATTTTTAAAATATATACCATAGTACAATTAGGGGCTT ATAATAAAGGACTGTAATCCTATTTAGAATGTTGACTTATAGTACATGATAAATGATAGG AAATTGAGGTAAGTTTTTTGAAGTCATGTGATATTTTACATTTAAAATCTTTTTTTTACA TTTTTTTTTTCTTTTGGCAGCAATTTAAATGTTATGACCATGTAAACTACTTTTCTTGTT AGGTAATTTTTTTCACCTAGACTTTTTTTTTCCCAATTAAGAAAAATATATACTAAACAA AGCAACAATAAAATATGATTATCCTATTTGAGGAAAATATGTTTTCTGCCAGTGGATTTA AAAAACTTTTAGTCTGCAAAATGAGGGGAGGGGTCAGAGCATGTCCTAGTTCAATGTTGA TTTCTTTTTTTAAAGAAAAGCATTAAAACATGAAATTGTTTCACTTTGGCAGAAATATTT GCTCTCTTGATGAAATTATTTTTCCTTATGAGCAAAAAAAAAAAAAAAAAGGACTAGGAA AATAAATCAAGGTGATGTCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 372-490, + strand, RNAz p=0.78037 | |
| 449-554, - strand, RNAz p=0.652621 | |
| 1353-1467, - strand, RNAz p=0.920983 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 372-490, + strand, RNAz p=0.78037 | |
| 449-554, - strand, RNAz p=0.652621 | |
| 1353-1467, - strand, RNAz p=0.920983 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 7-258, gnl|bosTau2|chr4 (55046208-55046464) | |
| 7-258, gnl|dasNov1|scaffold_255 (189143-188141) | |
| 7-258, gnl|hg17|chr7 (136484880-136485908) | |
| 7-258, gnl|Hg17|chr7 (136485701-136485440) | |
| 7-258, gnl|mm7|chr6 (36740913-36741929) | |
| 7-258, gnl|Mm7|chr6 (36741742-36741480) | |
| 7-258, gnl|monDom2|scaffold_22 (5481150-5480069) | |
| 7-258, gnl|oryCun1|scaffold_199664 (35306-34304) | |
| 7-258, gnl|panTro1|chr6 (139206965-139207993) | |
| 7-258, gnl|rheMac2|chr3 (174840931-174841941) | |
| 7-258, gnl|rn3|chr4 (64435635-64436648) | |
| 372-554, gnl|bosTau2|chr4 (55125252-55125434) | |
| 372-554, gnl|canFam2|chr16 (14311983-14311794) | |
| 372-554, gnl|danRer3|chr16 (50456638-50456459) | |
| 372-554, gnl|dasNov1|scaffold_2683 (47377-47188) | |
| 372-554, gnl|echTel1|scaffold_207265 (894-745) | |
| 372-554, gnl|fr1|chrUn (185779329-185779144) | |
| 372-554, gnl|galGal2|chr1 (54402586-54402397) | |
| 372-554, gnl|hg17|chr7 (136395454-136395643) | |
| 372-554, gnl|Hg17|chr7 (136395642-136395460) | |
| 372-554, gnl|loxAfr1|scaffold_40574 (7991-8165) | |
| 372-554, gnl|mm7|chr6 (36674901-36675090) | |
| 372-554, gnl|Mm7|chr6 (36675089-36674907) | |
| 372-554, gnl|monDom2|scaffold_22 (5595734-5595545) | |
| 372-554, gnl|oryCun1|scaffold_199664 (115529-115342) | |
| 372-554, gnl|panTro1|chr6 (139117463-139117652) | |
| 372-554, gnl|rheMac2|chr3 (174758450-174758639) | |
| 372-554, gnl|rn3|chr4 (64374827-64375015) | |
| 372-554, gnl|tetNig1|chr19 (1326827-1326638) | |
| 372-554, gnl|xenTro1|scaffold_447 (640093-640274) | |
| 709-1467, gnl|bosTau2|chr4 (55150871-55151630) | |
| 709-1467, gnl|Hg17|chr7 (136370079-136369344) | |
| 709-1467, gnl|Mm7|chr6 (36647350-36646513) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-258, gnl|bosTau2|chr4 (55046208-55046464) | |
| 7-258, gnl|dasNov1|scaffold_255 (189143-188141) | |
| 7-258, gnl|hg17|chr7 (136484880-136485908) | |
| 7-258, gnl|Hg17|chr7 (136485701-136485440) | |
| 7-258, gnl|mm7|chr6 (36740913-36741929) | |
| 7-258, gnl|Mm7|chr6 (36741742-36741480) | |
| 7-258, gnl|monDom2|scaffold_22 (5481150-5480069) | |
| 7-258, gnl|oryCun1|scaffold_199664 (35306-34304) | |
| 7-258, gnl|panTro1|chr6 (139206965-139207993) | |
| 7-258, gnl|rheMac2|chr3 (174840931-174841941) | |
| 7-258, gnl|rn3|chr4 (64435635-64436648) | |
| 372-554, gnl|bosTau2|chr4 (55125252-55125434) | |
| 372-554, gnl|canFam2|chr16 (14311983-14311794) | |
| 372-554, gnl|danRer3|chr16 (50456638-50456459) | |
| 372-554, gnl|dasNov1|scaffold_2683 (47377-47188) | |
| 372-554, gnl|echTel1|scaffold_207265 (894-745) | |
| 372-554, gnl|fr1|chrUn (185779329-185779144) | |
| 372-554, gnl|galGal2|chr1 (54402586-54402397) | |
| 372-554, gnl|hg17|chr7 (136395454-136395643) | |
| 372-554, gnl|Hg17|chr7 (136395642-136395460) | |
| 372-554, gnl|loxAfr1|scaffold_40574 (7991-8165) | |
| 372-554, gnl|mm7|chr6 (36674901-36675090) | |
| 372-554, gnl|Mm7|chr6 (36675089-36674907) | |
| 372-554, gnl|monDom2|scaffold_22 (5595734-5595545) | |
| 372-554, gnl|oryCun1|scaffold_199664 (115529-115342) | |
| 372-554, gnl|panTro1|chr6 (139117463-139117652) | |
| 372-554, gnl|rheMac2|chr3 (174758450-174758639) | |
| 372-554, gnl|rn3|chr4 (64374827-64375015) | |
| 372-554, gnl|tetNig1|chr19 (1326827-1326638) | |
| 372-554, gnl|xenTro1|scaffold_447 (640093-640274) | |
| 709-1467, gnl|bosTau2|chr4 (55150871-55151630) | |
| 709-1467, gnl|Hg17|chr7 (136370079-136369344) | |
| 709-1467, gnl|Mm7|chr6 (36647350-36646513) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| ece (1.37583) | |
| amn (1.25313) | |
| eru (1.20048) | |
| fco (0.628832) | |
| eep (0.61282) | |
| fcc (0.593354) | |
| fce (0.543183) | |
| cut (0.509771) | |
| fhi (0.508733) | |
| elu (0.385356) | |
| bla (0.373042) | |
| sto (0.359648) | |
| eye (0.341006) | |
| eje (0.296501) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fat (0.147427) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (1.37583) | |
| amn (1.25313) | |
| eru (1.20048) | |
| fco (0.628832) | |
| eep (0.61282) | |
| fcc (0.593354) | |
| fce (0.543183) | |
| cut (0.509771) | |
| fhi (0.508733) | |
| elu (0.385356) | |
| bla (0.373042) | |
| sto (0.359648) | |
| eye (0.341006) | |
| eje (0.296501) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fat (0.147427) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| tra (0.123092) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |