Non-Coding RNA Search

Ss1.1-Pig4-TMW8051E12.5

Sequence:


               
               CTACCCGACGAAGGAGCAGTATGGAGACACGCTCCACTTTTGTCGGCACTGCAGCATCCT
CTTTTGGAAGGACTCAGGCCACCCTTGCACGGCCGCTGACCCTGGTAGCTGCTTCACGCC
TGTGTCGCCGCAGCACTTCATTGACCTCTTCAAGTTTTAAGGGCACCCCTGCCCCACCTG
CCGTGGCCTGAGCAGCACCTGGTAGGACGTATGCTCCATGACTGAGCCGTGACTGCGGTG
CCCCCCCCTGGAGAGGCCATGGATGGACTTGCGGGCAGGAGCACCTGTTGTGTTTCCGTC
TTTGAAAGGGGGTTAGGAAACCCAGGCAAAATCATTTCTACTTCTTAAAAAAATTCTTCT
AAGCACATCAAAATTTGCAACTTGGCATATTTGTGAATATGGTTCAGAAGAGTGTATTTT
CAGCATCATCTCTGCTGAACTAAGACTAACAGCCAAGAATATGCTTAATCGTCAAATGAT
CATTTCTTGATTTTGTAGTAATTGGGGGCGGGGACAGAACATTGGTTCTTGTAAGGATGT
TGTGCAGAATATTTATTTTTCTTAAGATGTATTTTAACTGTACTGATTGTGTCCCCATGA
ATGCTCATGGATACAGACAGAGCCCAGGGAAGTAAATGCATGTTTCTGGTAGCTCAGTGG
TGCAGACGTCTGCCACCCATAGACATGAACTTGGGGCTGTGGTCCCGGGTTCATGGACAG
AGGCTGGCCGGCAGGGCCCCGACCTGTGGCCAGCCCTGTGTGGCCTGCATTTCACTGTTC
TGAAACCCCTTTTACAAAGTAATAAATCATGTTCCTCTATCGATTTTAACTTCATCAGTT
TTGCATCTTTCTGAAAAAAGTAGTATTAAGGATTTTGATATCATTTATTGAAACCTTTCA
AAGATTTTATTTTTAAAATATTGCATGTGCATTTTAGAAAATTTTGAAAATAAAGTTTAT
AAAAGAGAATAAAACTTGCATATCACCCTGCCACTCAAAGATAGCTGTGCTTGCCAGAAA
GCAGGTAGGGGTGGCCTGGTGGATGCAGGGGAAGAATGGGGCCACGCACCTCAGCAAAAC
CACTTCTGCTCTCTTCTTAGCACATGGGGCTTTGCAATTTGCATATTTGTAAATAAAGTT
CTGTGCTGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCCGACGAAGGAGCAGTATGGAGACACGCTCCACTTTTGTCGGCACTGCAGCATCCT
CTTTTGGAAGGACTCAGGCCACCCTTGCACGGCCGCTGACCCTGGTAGCTGCTTCACGCC
TGTGTCGCCGCAGCACTTCATTGACCTCTTCAAGTTTTAAGGGCACCCCTGCCCCACCTG
CCGTGGCCTGAGCAGCACCTGGTAGGACGTATGCTCCATGACTGAGCCGTGACTGCGGTG
CCCCCCCCTGGAGAGGCCATGGATGGACTTGCGGGCAGGAGCACCTGTTGTGTTTCCGTC
TTTGAAAGGGGGTTAGGAAACCCAGGCAAAATCATTTCTACTTCTTAAAAAAATTCTTCT
AAGCACATCAAAATTTGCAACTTGGCATATTTGTGAATATGGTTCAGAAGAGTGTATTTT
CAGCATCATCTCTGCTGAACTAAGACTAACAGCCAAGAATATGCTTAATCGTCAAATGAT
CATTTCTTGATTTTGTAGTAATTGGGGGCGGGGACAGAACATTGGTTCTTGTAAGGATGT
TGTGCAGAATATTTATTTTTCTTAAGATGTATTTTAACTGTACTGATTGTGTCCCCATGA
ATGCTCATGGATACAGACAGAGCCCAGGGAAGTAAATGCATGTTTCTGGTAGCTCAGTGG
TGCAGACGTCTGCCACCCATAGACATGAACTTGGGGCTGTGGTCCCGGGTTCATGGACAG
AGGCTGGCCGGCAGGGCCCCGACCTGTGGCCAGCCCTGTGTGGCCTGCATTTCACTGTTC
TGAAACCCCTTTTACAAAGTAATAAATCATGTTCCTCTATCGATTTTAACTTCATCAGTT
TTGCATCTTTCTGAAAAAAGTAGTATTAAGGATTTTGATATCATTTATTGAAACCTTTCA
AAGATTTTATTTTTAAAATATTGCATGTGCATTTTAGAAAATTTTGAAAATAAAGTTTAT
AAAAGAGAATAAAACTTGCATATCACCCTGCCACTCAAAGATAGCTGTGCTTGCCAGAAA
GCAGGTAGGGGTGGCCTGGTGGATGCAGGGGAAGAATGGGGCCACGCACCTCAGCAAAAC
CACTTCTGCTCTCTTCTTAGCACATGGGGCTTTGCAATTTGCATATTTGTAAATAAAGTT
CTGTGCTGAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               671-770, - strand, RNAz p=0.771038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               671-770, - strand, RNAz p=0.771038

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               295-1147, gnl|bosTau2|chr1 (100112368-100111498)
               

               
               295-1147, gnl|Hg17|chr8 (408968-409902)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               295-1147, gnl|bosTau2|chr1 (100112368-100111498)
               

               
               295-1147, gnl|Hg17|chr8 (408968-409902)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               hea (0.408998)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	295-1147, gnl\|bosTau2\|chr1 (100112368-100111498)
	295-1147, gnl\|Hg17\|chr8 (408968-409902)

	hea (0.408998)
	sin (0.349895)
	sme (0.305437)
	spl (0.286369)
	sag (0.182715)
	tbr (0.154178)
	hlv (0.139256)
	ret (0.128733)
	cly (0.120642)
	spc (0.113366)
	ldo (0.0970026)