Ss1.1-Pig4-TMW8051E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGATTGTTCCTCCCTGCCAGAAAAAAAAAGTGCAGGATGGCTCTACGCTGCCGGGGCG CCGTCCGCACTGTATGCCCCCGGGTGAGCGGCGGGGCGAAAAGGGAGCGGGCGTGGGGTG CCAGAAAAAAAAAGTGCAGGATGGCTCTACGCTGCCGGGGCGCCGTCCGCACTGTATGCC CCCGGGTATTTGGAAGATATTTATGCAGTCCAGTCAGAGCAATAAGTTCCTTGCCAGATA AAAAAAAGGAATTTTTACAGAATGGACCAGACCTTCAAGATTTTCTATCTGGTGATCTTG CAGACAAGAGCACCTGGGATGACTATAAAGGAAACCTAAAACGCCAGAAAGGAGAAAGGT TAAGACTACCTCCATGGCTAAAGACAGAGATTCCCATGGGGAAAAATTACAATAAACTGA AGAATACATTGCGGAATTTAAATCTCCATACTGTGTGTGAGGAAGCTCGATGTCCTAATA TTGGAGAGTGCTGGGGAGGCGGAGAATATGCCACTGCTACAGCCACAATCATGTTGATGG GTGATACATGTACAAGAGGTTGCAGATTTTGTTCTGTTAAGACTGCAAGAAATCCACCTC CACTGGATGCCAATGAGCCCTACAATACCGCAAAGGCAATTGCAGAATGGGGTCTGGATT ATGTTGTCCTGACGTCTGTGGATCGAGATGATATGCCTGATGGAGGAGCTGAGCACTTTG CAAAGACCGTATCTTACTTAAAGGAAAGGAATCCAAAAATTCTTGTGGAATGTCTCACCC CTGATTTCCGAGGAGATCTTAAAGCAGTAGAAAAAGTTGCTCTGTCCGGATTAGATGTAT ATGCACATAATGTAGAAACTGTTCCGGAATTACAGAGGAAAGTTCGTGATCCCCGGGCTG GTTTCGACCAGTCTCTACGCGTACTGAAACATGCCAAGGAGGTTCGACCTGATGTTATTT CTAAAACATCCATAATGTTGGGTTTAGGTGAGAATGATGAGCAAGTATATGCAACGATGA AAGCACTTCGTGAAGCAGATGTGGACTGTTTGACTTTAGGACAATATATGCAGCCAACAA AGCGCCACCTTAAGGTCGAAGAATACATTACTCCTGAAAAGTTCAAATACTGGGAAAAAG TAGGAAATGAACTTGGATTTCATTATACTGCCAGTGGCCCTCTGGTGCGTTCTTCATATA AAGCAGGTGAATTTTTCCTGAAAAATCTAGTGGCTAAAAGAAAAACAAAAGCCCTCTAAT ATTCAACAAGACATTCAAGATCACAGGAATTTTAAACATTTGACTGCAGTTGGTAACAGA AGTGATGGCAGAATGCCTAGACTTCAGTGGGCATATCCCAGTCTTTTTGTTTTAAGAAAA AGGTCAATAAGCTGTGCATATTTAATTGTAGTAATTTGTCTTTTAGCATATCGTCTTTGT CCCAATAAATAATTGCTTGTTATGTATGATATATTCATAAAACTTCTTTGTAGGAGTTTA CTGTTAACAGTATAATTTTAAAAACACATTAAAAACTTCTAGAAAATCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGATTGTTCCTCCCTGCCAGAAAAAAAAAGTGCAGGATGGCTCTACGCTGCCGGGGCG CCGTCCGCACTGTATGCCCCCGGGTGAGCGGCGGGGCGAAAAGGGAGCGGGCGTGGGGTG CCAGAAAAAAAAAGTGCAGGATGGCTCTACGCTGCCGGGGCGCCGTCCGCACTGTATGCC CCCGGGTATTTGGAAGATATTTATGCAGTCCAGTCAGAGCAATAAGTTCCTTGCCAGATA AAAAAAAGGAATTTTTACAGAATGGACCAGACCTTCAAGATTTTCTATCTGGTGATCTTG CAGACAAGAGCACCTGGGATGACTATAAAGGAAACCTAAAACGCCAGAAAGGAGAAAGGT TAAGACTACCTCCATGGCTAAAGACAGAGATTCCCATGGGGAAAAATTACAATAAACTGA AGAATACATTGCGGAATTTAAATCTCCATACTGTGTGTGAGGAAGCTCGATGTCCTAATA TTGGAGAGTGCTGGGGAGGCGGAGAATATGCCACTGCTACAGCCACAATCATGTTGATGG GTGATACATGTACAAGAGGTTGCAGATTTTGTTCTGTTAAGACTGCAAGAAATCCACCTC CACTGGATGCCAATGAGCCCTACAATACCGCAAAGGCAATTGCAGAATGGGGTCTGGATT ATGTTGTCCTGACGTCTGTGGATCGAGATGATATGCCTGATGGAGGAGCTGAGCACTTTG CAAAGACCGTATCTTACTTAAAGGAAAGGAATCCAAAAATTCTTGTGGAATGTCTCACCC CTGATTTCCGAGGAGATCTTAAAGCAGTAGAAAAAGTTGCTCTGTCCGGATTAGATGTAT ATGCACATAATGTAGAAACTGTTCCGGAATTACAGAGGAAAGTTCGTGATCCCCGGGCTG GTTTCGACCAGTCTCTACGCGTACTGAAACATGCCAAGGAGGTTCGACCTGATGTTATTT CTAAAACATCCATAATGTTGGGTTTAGGTGAGAATGATGAGCAAGTATATGCAACGATGA AAGCACTTCGTGAAGCAGATGTGGACTGTTTGACTTTAGGACAATATATGCAGCCAACAA AGCGCCACCTTAAGGTCGAAGAATACATTACTCCTGAAAAGTTCAAATACTGGGAAAAAG TAGGAAATGAACTTGGATTTCATTATACTGCCAGTGGCCCTCTGGTGCGTTCTTCATATA AAGCAGGTGAATTTTTCCTGAAAAATCTAGTGGCTAAAAGAAAAACAAAAGCCCTCTAAT ATTCAACAAGACATTCAAGATCACAGGAATTTTAAACATTTGACTGCAGTTGGTAACAGA AGTGATGGCAGAATGCCTAGACTTCAGTGGGCATATCCCAGTCTTTTTGTTTTAAGAAAA AGGTCAATAAGCTGTGCATATTTAATTGTAGTAATTTGTCTTTTAGCATATCGTCTTTGT CCCAATAAATAATTGCTTGTTATGTATGATATATTCATAAAACTTCTTTGTAGGAGTTTA CTGTTAACAGTATAATTTTAAAAACACATTAAAAACTTCTAGAAAATCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-119, + strand, RNAz p=0.584366 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-119, + strand, RNAz p=0.584366 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC062751, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 3-119, gnl|bosTau2|chr6 (30739243-30739128) | |
| 3-119, gnl|Hg17|chr4 (39283263-39283383) | |
| 185-360, gnl|bosTau2|chr6 (30738031-30737856) | |
| 185-360, gnl|Hg17|chr4 (39284975-39285150) | |
| 185-360, gnl|Mm7|chr5 (64747030-64747202) | |
| 513-690, gnl|bosTau2|chr6 (30734461-30734284) | |
| 513-690, gnl|Hg17|chr4 (39289211-39289388) | |
| 513-690, gnl|Mm7|chr5 (64752393-64752570) | |
| 876-1023, gnl|bosTau2|chr6 (30731069-30730922) | |
| 876-1023, gnl|Hg17|chr4 (39294203-39294350) | |
| 876-1023, gnl|Mm7|chr5 (64757420-64757567) | |
| 1093-1221, gnl|bosTau2|chr6 (30729580-30729452) | |
| 1093-1221, gnl|canFam2|chr3 (75802645-75802496) | |
| 1093-1221, gnl|danRer3|chr1 (21411624-21411485) | |
| 1093-1221, gnl|dasNov1|scaffold_24442 (40091-40249) | |
| 1093-1221, gnl|echTel1|scaffold_213127 (5404-5562) | |
| 1093-1221, gnl|fr1|chrUn (234001894-234002041) | |
| 1093-1221, gnl|galGal2|chr4 (69768807-69768964) | |
| 1093-1221, gnl|hg17|chr4 (39297285-39297444) | |
| 1093-1221, gnl|loxAfr1|scaffold_2611 (11511-11353) | |
| 1093-1221, gnl|mm7|chr5 (64760140-64760297) | |
| 1093-1221, gnl|monDom2|scaffold_26 (4583928-4584083) | |
| 1093-1221, gnl|oryCun1|scaffold_198215 (5527-5368) | |
| 1093-1221, gnl|panTro1|chr3 (41989098-41989257) | |
| 1093-1221, gnl|rheMac2|chr5 (34466808-34466967) | |
| 1093-1221, gnl|rn3|chr14 (45581915-45581753) | |
| 1093-1221, gnl|tetNig1|chrUn_random (51271253-51271406) | |
| 1093-1221, gnl|xenTro1|scaffold_84 (2008561-2008425) | |
| 1321-1548, gnl|bosTau2|chr22 (1651722-1651939) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-119, gnl|bosTau2|chr6 (30739243-30739128) | |
| 3-119, gnl|Hg17|chr4 (39283263-39283383) | |
| 185-360, gnl|bosTau2|chr6 (30738031-30737856) | |
| 185-360, gnl|Hg17|chr4 (39284975-39285150) | |
| 185-360, gnl|Mm7|chr5 (64747030-64747202) | |
| 513-690, gnl|bosTau2|chr6 (30734461-30734284) | |
| 513-690, gnl|Hg17|chr4 (39289211-39289388) | |
| 513-690, gnl|Mm7|chr5 (64752393-64752570) | |
| 876-1023, gnl|bosTau2|chr6 (30731069-30730922) | |
| 876-1023, gnl|Hg17|chr4 (39294203-39294350) | |
| 876-1023, gnl|Mm7|chr5 (64757420-64757567) | |
| 1093-1221, gnl|bosTau2|chr6 (30729580-30729452) | |
| 1093-1221, gnl|canFam2|chr3 (75802645-75802496) | |
| 1093-1221, gnl|danRer3|chr1 (21411624-21411485) | |
| 1093-1221, gnl|dasNov1|scaffold_24442 (40091-40249) | |
| 1093-1221, gnl|echTel1|scaffold_213127 (5404-5562) | |
| 1093-1221, gnl|fr1|chrUn (234001894-234002041) | |
| 1093-1221, gnl|galGal2|chr4 (69768807-69768964) | |
| 1093-1221, gnl|hg17|chr4 (39297285-39297444) | |
| 1093-1221, gnl|loxAfr1|scaffold_2611 (11511-11353) | |
| 1093-1221, gnl|mm7|chr5 (64760140-64760297) | |
| 1093-1221, gnl|monDom2|scaffold_26 (4583928-4584083) | |
| 1093-1221, gnl|oryCun1|scaffold_198215 (5527-5368) | |
| 1093-1221, gnl|panTro1|chr3 (41989098-41989257) | |
| 1093-1221, gnl|rheMac2|chr5 (34466808-34466967) | |
| 1093-1221, gnl|rn3|chr14 (45581915-45581753) | |
| 1093-1221, gnl|tetNig1|chrUn_random (51271253-51271406) | |
| 1093-1221, gnl|xenTro1|scaffold_84 (2008561-2008425) | |
| 1321-1548, gnl|bosTau2|chr22 (1651722-1651939) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| pro (0.512033) | |
| sug (0.381874) | |
| bla (0.373042) | |
| mgm (0.360685) | |
| vin (0.332557) | |
| spc (0.226732) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| sug (0.381874) | |
| bla (0.373042) | |
| mgm (0.360685) | |
| vin (0.332557) | |
| spc (0.226732) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| clu (0.119646) | |
| cty (0.10408) |