Non-Coding RNA Search

Ss1.1-Pig4-TMW8051F01.3

Sequence:


               
               GAGATGCCATTTCCAGTGTTGAACGATATGATCCACAGACCAATGAATGGCGAATGGTAG
CTTCAATGAGCAAAAGGAGATGTGGAGTTGGGGTCAGTGTTCTTGATGACCTGTTATATG
CAGTAGGAGGCCATGATGGATCTTCTTATCTCAATAGTGTTGAAAGATATGATCCCAAAA
CAAACCAATGGAGCAGTGATGTGGCTCCTACAAGCACCTGCAGGACAAGTGTCGGTGTGG
CAGTGCTTGGAGGCTTTCTCTATGCTGTGGGTGGCCAGGATGGCGTGTCTTGCCTCAACA
TTGTTGAGAGGTACGATCCAAAGGAGAACAAGTGGACTCGGGTGGCTTCAATGAGTACCA
GAAGACTGGGTGTGGCCGTGGCTGTGTTAGGAGGTTTCTTATATGCTGTAGGTGGCTCTG
ATGGGACATCTCCACTCAACACAGTGGAGCGTTATAACCCTCAGGAAAACAGATGGCACA
CCATAGCCCCTATGGGGACCCGGAGGAAACACCTAGGCTGTGCGGTGTATCAGGACATGA
TCTATGCCGTAGGAGGTAGAGATGACACTACAGAGCTTAGCAGTGCTGAGAGATATAACC
CCAGAACTAACCAGTGGTCTCCAGTGGTGGCTATGACATCCCGCCGTAGTGGAGTTGGCC
TGGCAGTCGTGAATGGACAGCTCATGGCTGTTGGAGGTTTTGATGGCACAACGTACTTGA
AGACCATTGAAGTTTTTGATCCTGATGCCAATACGTGGAGGTTATATGGTGGGATGAATT
ACCGTCGGCTTGGGGGTGGTGTAGGAGTTATAAAAATGACACATTGTGAATCCCATATAT
GGTGAACATAAAGAAGAGAGTCATGTATATGCACTTCTGTGTTCTGGAGAGCTTTGACTT
TGGAGCTTTGTACAGCTCTAGAAAACACTAAACAAATTGTATTCTTTGCCGGTGCCTCAA
CATGTGGAAATACAAACACAAGGAAAGTACTTCACCTGCAAGATGCCATCTTTGCACAAT
AATTTTCAGTTTTCTGCAGAATAATATTTATTTTTGGTTTTAATTTATCATGGATTTTTT
GTTGTTGGGTTTTTGTTTTTTTTTAATTTAGCCTTCCCTCCTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATGCCATTTCCAGTGTTGAACGATATGATCCACAGACCAATGAATGGCGAATGGTAG
CTTCAATGAGCAAAAGGAGATGTGGAGTTGGGGTCAGTGTTCTTGATGACCTGTTATATG
CAGTAGGAGGCCATGATGGATCTTCTTATCTCAATAGTGTTGAAAGATATGATCCCAAAA
CAAACCAATGGAGCAGTGATGTGGCTCCTACAAGCACCTGCAGGACAAGTGTCGGTGTGG
CAGTGCTTGGAGGCTTTCTCTATGCTGTGGGTGGCCAGGATGGCGTGTCTTGCCTCAACA
TTGTTGAGAGGTACGATCCAAAGGAGAACAAGTGGACTCGGGTGGCTTCAATGAGTACCA
GAAGACTGGGTGTGGCCGTGGCTGTGTTAGGAGGTTTCTTATATGCTGTAGGTGGCTCTG
ATGGGACATCTCCACTCAACACAGTGGAGCGTTATAACCCTCAGGAAAACAGATGGCACA
CCATAGCCCCTATGGGGACCCGGAGGAAACACCTAGGCTGTGCGGTGTATCAGGACATGA
TCTATGCCGTAGGAGGTAGAGATGACACTACAGAGCTTAGCAGTGCTGAGAGATATAACC
CCAGAACTAACCAGTGGTCTCCAGTGGTGGCTATGACATCCCGCCGTAGTGGAGTTGGCC
TGGCAGTCGTGAATGGACAGCTCATGGCTGTTGGAGGTTTTGATGGCACAACGTACTTGA
AGACCATTGAAGTTTTTGATCCTGATGCCAATACGTGGAGGTTATATGGTGGGATGAATT
ACCGTCGGCTTGGGGGTGGTGTAGGAGTTATAAAAATGACACATTGTGAATCCCATATAT
GGTGAACATAAAGAAGAGAGTCATGTATATGCACTTCTGTGTTCTGGAGAGCTTTGACTT
TGGAGCTTTGTACAGCTCTAGAAAACACTAAACAAATTGTATTCTTTGCCGGTGCCTCAA
CATGTGGAAATACAAACACAAGGAAAGTACTTCACCTGCAAGATGCCATCTTTGCACAAT
AATTTTCAGTTTTCTGCAGAATAATATTTATTTTTGGTTTTAATTTATCATGGATTTTTT
GTTGTTGGGTTTTTGTTTTTTTTTAATTTAGCCTTCCCTCCTCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K2U3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K2U3_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               442-664, gnl|bosTau2|chr16 (41806467-41806691)
               

               
               442-664, gnl|Hg17|chr1 (170476427-170476645)
               

               
               442-664, gnl|Mm7|chr1 (161058110-161057887)
               


               
               756-1104, gnl|bosTau2|chr16 (41812464-41812812)
               

               
               756-1104, gnl|Hg17|chr1 (170485953-170486277)
               

               
               756-1104, gnl|Mm7|chr1 (161052886-161052485)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               442-664, gnl|bosTau2|chr16 (41806467-41806691)
               

               
               442-664, gnl|Hg17|chr1 (170476427-170476645)
               

               
               442-664, gnl|Mm7|chr1 (161058110-161057887)
               


               
               756-1104, gnl|bosTau2|chr16 (41812464-41812812)
               

               
               756-1104, gnl|Hg17|chr1 (170485953-170486277)
               

               
               756-1104, gnl|Mm7|chr1 (161052886-161052485)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

	442-664, gnl\|bosTau2\|chr16 (41806467-41806691)
	442-664, gnl\|Hg17\|chr1 (170476427-170476645)
	442-664, gnl\|Mm7\|chr1 (161058110-161057887)

	756-1104, gnl\|bosTau2\|chr16 (41812464-41812812)
	756-1104, gnl\|Hg17\|chr1 (170485953-170486277)
	756-1104, gnl\|Mm7\|chr1 (161052886-161052485)

	ece (0.229305)
	ste (0.135208)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)