Non-Coding RNA Search

Ss1.1-Pig4-TMW8051F04.3

Sequence:


               
               CGTTTTTCATGTGTTTTTACTGGAGTGAATTCTGACAGTCCACCTGGGAATGTGGAGGCA
ACTGTGGTTGCCGTTCTACAGCTGAAGAACCGAGGCTCAGAGGACAAGGACAGCCCGTGT
CGCCTACAAGTCCTGCTCTAGGACCTTCTCCCCGCTTCTGTGGAGACAGAATCACACAGA
CATGGGGATAGAAGTGGTTATTTTGTAGACATACGGGTTTTAGAAAAACCCTTAATACTG
CTAAGGGCTTAAAAATACATATCTAGATTAAATTACTGCAATGAGAGAGTCCTTAATTGC
TAAATGACACAGACATTAGCAGTTTCATTTGGGGAGTCATTTCCCCTGATTTTGTTATGT
TCTTTCCTGACAATTTTCCTAGAACTAATTTGCAAGTTCAATTGGGGATTAAAATTTTCC
CTTGAAAATGTTAAACATTTCAGGTAACTGAAAATAGTTTATTTGTATTCCTTGCCAATC
TGGGAATATGCCTTTTATTTTTTTTAAGTGCTGTATTAATACTTTTTGAAGGAAAAGGAC
GCTTAAAATTTTACCCCGAAACTTCAATCTGAAATGTCTTACATTAAGAATTTCTTGAAT
GTTGTGTATATATTTTTAAAAAAGCACTTTGTGAAATAGTTTGTACATTTATTTCCTAAT
TTATACATGATTTTTGGTGTTGATATATTTAATGATTAATAACAAAATGTTTATTTAATG
TGTTGTCCATTCTTATGTAATATTGTGGGGAAAGTGATGCCAGCAGCTCCTTTTCGTTCT
CTGTATTATATCTTCTCTTCTGTAATATGAATGTCTGCAAAGCTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTTTTCATGTGTTTTTACTGGAGTGAATTCTGACAGTCCACCTGGGAATGTGGAGGCA
ACTGTGGTTGCCGTTCTACAGCTGAAGAACCGAGGCTCAGAGGACAAGGACAGCCCGTGT
CGCCTACAAGTCCTGCTCTAGGACCTTCTCCCCGCTTCTGTGGAGACAGAATCACACAGA
CATGGGGATAGAAGTGGTTATTTTGTAGACATACGGGTTTTAGAAAAACCCTTAATACTG
CTAAGGGCTTAAAAATACATATCTAGATTAAATTACTGCAATGAGAGAGTCCTTAATTGC
TAAATGACACAGACATTAGCAGTTTCATTTGGGGAGTCATTTCCCCTGATTTTGTTATGT
TCTTTCCTGACAATTTTCCTAGAACTAATTTGCAAGTTCAATTGGGGATTAAAATTTTCC
CTTGAAAATGTTAAACATTTCAGGTAACTGAAAATAGTTTATTTGTATTCCTTGCCAATC
TGGGAATATGCCTTTTATTTTTTTTAAGTGCTGTATTAATACTTTTTGAAGGAAAAGGAC
GCTTAAAATTTTACCCCGAAACTTCAATCTGAAATGTCTTACATTAAGAATTTCTTGAAT
GTTGTGTATATATTTTTAAAAAAGCACTTTGTGAAATAGTTTGTACATTTATTTCCTAAT
TTATACATGATTTTTGGTGTTGATATATTTAATGATTAATAACAAAATGTTTATTTAATG
TGTTGTCCATTCTTATGTAATATTGTGGGGAAAGTGATGCCAGCAGCTCCTTTTCGTTCT
CTGTATTATATCTTCTCTTCTGTAATATGAATGTCTGCAAAGCTTAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-238, + strand, RNAz p=0.678702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, + strand, RNAz p=0.678702

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB014593, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB014593, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-769, gnl|bosTau2|chr13 (36154481-36153710)
               

               
               3-769, gnl|Hg17|chr20 (60189428-60190206)
               

               
               3-769, gnl|Mm7|chr2 (180569781-180570621)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-769, gnl|bosTau2|chr13 (36154481-36153710)
               

               
               3-769, gnl|Hg17|chr20 (60189428-60190206)
               

               
               3-769, gnl|Mm7|chr2 (180569781-180570621)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	3-769, gnl\|bosTau2\|chr13 (36154481-36153710)
	3-769, gnl\|Hg17\|chr20 (60189428-60190206)
	3-769, gnl\|Mm7\|chr2 (180569781-180570621)