Ss1.1-Pig4-TMW8051F05.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTGGTGGGTTACCCGGGCCGCCTGCATCTCTGGGACCATGAGATGAGTAAGTGGAAGTAC GAGTCCGAGTGGACCAACGAGGTGTCCATGGTTCTCACCGGAGCAGCTTTTTATCATAAG TATTTTAATTACCTGTATACCTACAAGATGCCTGGGGACATTAAGAACTGGGTAGATGCT CATATGAACTGTGAAGACATTGCCATGAATTTCCTGGTGGCTAACGTCACCGGGAAAGCG GTCATCAAGGTAACACCACGAAAGAAATTCAAGTGTCCTGAGTGCACAGCCATTGATGGG CTCTCGCTCGACCAGACACACATGGTGGAGAGGTCTGAGTGCATCAACAAGTTTGCTTCA GTCTTTGGGACAATGCCCCTTAAGGTGGTGGAACACCGAGCCGACCCCGTCCTGTACAAG GACGACTTTCCTGAGAAACTCAAGAGCTTCCCCAACATCGGCAGCTTATGAAATGTGTCA CTGGTGGAGATCGAAACACTAACCCTGGACAGAGGAGGAGCCCGCGGCCCCCCAGCACTC TGGTACCCGGACTTGAGAGTGGAAGGTGGGCACGGCCCCACGCAGCCTGCTGTCCCGAGA GCAGGAGCCTAGGACATCTCAGCACCTCGAGCTGGGCATCCTCCTTTCTGATACTCTCGA CGGGTTCCTTCTGAAAAGACCAGCTGGATGGACGTGGCAGGCTCCGGGGGGAAGGCCGGC TCAGCCATGCTTTGTCTGAGAGGAAACCTCACTGGCTGTGAGAGGGATGGGACGAGAACC CTCCCAGCCCATTTCAGATTTGCGAAATCATGCAAGAGCTACCGTTTTTTCACTTTTTGT TATTTCCAATCAGTGGGTTCTTCAGAGGAAAAGCCGAGCCCAGAATTGGGTGCAAAATGC AAACCTCCTAGTGGCGTTTGACATACGCCTCGGGACCCGGGGCCCTGGCCTCATGTGGAG GAGGAGCACCAGCTGCTGAGTAGGGATCCTGTAAGTTCCTCTTTGGTTTGGCTTTTTGAT ATTAAAATTATTTTTTATTCTGTTTCCTACTATGTC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTGGTGGGTTACCCGGGCCGCCTGCATCTCTGGGACCATGAGATGAGTAAGTGGAAGTAC GAGTCCGAGTGGACCAACGAGGTGTCCATGGTTCTCACCGGAGCAGCTTTTTATCATAAG TATTTTAATTACCTGTATACCTACAAGATGCCTGGGGACATTAAGAACTGGGTAGATGCT CATATGAACTGTGAAGACATTGCCATGAATTTCCTGGTGGCTAACGTCACCGGGAAAGCG GTCATCAAGGTAACACCACGAAAGAAATTCAAGTGTCCTGAGTGCACAGCCATTGATGGG CTCTCGCTCGACCAGACACACATGGTGGAGAGGTCTGAGTGCATCAACAAGTTTGCTTCA GTCTTTGGGACAATGCCCCTTAAGGTGGTGGAACACCGAGCCGACCCCGTCCTGTACAAG GACGACTTTCCTGAGAAACTCAAGAGCTTCCCCAACATCGGCAGCTTATGAAATGTGTCA CTGGTGGAGATCGAAACACTAACCCTGGACAGAGGAGGAGCCCGCGGCCCCCCAGCACTC TGGTACCCGGACTTGAGAGTGGAAGGTGGGCACGGCCCCACGCAGCCTGCTGTCCCGAGA GCAGGAGCCTAGGACATCTCAGCACCTCGAGCTGGGCATCCTCCTTTCTGATACTCTCGA CGGGTTCCTTCTGAAAAGACCAGCTGGATGGACGTGGCAGGCTCCGGGGGGAAGGCCGGC TCAGCCATGCTTTGTCTGAGAGGAAACCTCACTGGCTGTGAGAGGGATGGGACGAGAACC CTCCCAGCCCATTTCAGATTTGCGAAATCATGCAAGAGCTACCGTTTTTTCACTTTTTGT TATTTCCAATCAGTGGGTTCTTCAGAGGAAAAGCCGAGCCCAGAATTGGGTGCAAAATGC AAACCTCCTAGTGGCGTTTGACATACGCCTCGGGACCCGGGGCCCTGGCCTCATGTGGAG GAGGAGCACCAGCTGCTGAGTAGGGATCCTGTAAGTTCCTCTTTGGTTTGGCTTTTTGAT ATTAAAATTATTTTTTATTCTGTTTCCTACTATGTC |
Aligned organism(s): 22 entry(ies) | More info |
Aligned organism(s): 22 entry(ies) | Help | Less info |
119-252, gnl|bosTau2|chr15 (47176447-47176314) | |
119-252, gnl|canFam2|chr18 (48036768-48036615) | |
119-252, gnl|danRer3|chr7 (12707381-12707515) | |
119-252, gnl|dasNov1|scaffold_2513 (4377-4241) | |
119-252, gnl|echTel1|scaffold_311272 (17423-17281) | |
119-252, gnl|fr1|chrUn (105977942-105978076) | |
119-252, gnl|galGal2|chr5 (19032008-19032145) | |
119-252, gnl|hg17|chr11 (44212239-44212381) | |
119-252, gnl|Hg17|chr11 (44212239-44212372) | |
119-252, gnl|loxAfr1|scaffold_61852 (866-1008) | |
119-252, gnl|mm7|chr2 (93555331-93555189) | |
119-252, gnl|Mm7|chr2 (93555329-93555196) | |
119-252, gnl|monDom2|scaffold_33 (9659827-9659967) | |
119-252, gnl|oryCun1|scaffold_199338 (9390-9530) | |
119-252, gnl|panTro1|chr9 (44709921-44710063) | |
119-252, gnl|rheMac2|chr14 (27871318-27871176) | |
119-252, gnl|rn3|chr3 (78016880-78016738) | |
119-252, gnl|tetNig1|chr5 (7010573-7010439) | |
119-252, gnl|xenTro1|scaffold_266 (878605-878463) | |
331-921, gnl|bosTau2|chr15 (47168204-47167629) | |
331-921, gnl|Hg17|chr11 (44222273-44222918) | |
331-921, gnl|Mm7|chr2 (93546989-93546468) |
Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
119-252, gnl|bosTau2|chr15 (47176447-47176314) | |
119-252, gnl|canFam2|chr18 (48036768-48036615) | |
119-252, gnl|danRer3|chr7 (12707381-12707515) | |
119-252, gnl|dasNov1|scaffold_2513 (4377-4241) | |
119-252, gnl|echTel1|scaffold_311272 (17423-17281) | |
119-252, gnl|fr1|chrUn (105977942-105978076) | |
119-252, gnl|galGal2|chr5 (19032008-19032145) | |
119-252, gnl|hg17|chr11 (44212239-44212381) | |
119-252, gnl|Hg17|chr11 (44212239-44212372) | |
119-252, gnl|loxAfr1|scaffold_61852 (866-1008) | |
119-252, gnl|mm7|chr2 (93555331-93555189) | |
119-252, gnl|Mm7|chr2 (93555329-93555196) | |
119-252, gnl|monDom2|scaffold_33 (9659827-9659967) | |
119-252, gnl|oryCun1|scaffold_199338 (9390-9530) | |
119-252, gnl|panTro1|chr9 (44709921-44710063) | |
119-252, gnl|rheMac2|chr14 (27871318-27871176) | |
119-252, gnl|rn3|chr3 (78016880-78016738) | |
119-252, gnl|tetNig1|chr5 (7010573-7010439) | |
119-252, gnl|xenTro1|scaffold_266 (878605-878463) | |
331-921, gnl|bosTau2|chr15 (47168204-47167629) | |
331-921, gnl|Hg17|chr11 (44222273-44222918) | |
331-921, gnl|Mm7|chr2 (93546989-93546468) |
Expressed library(ies): 15 entry(ies) | More info |
Expressed library(ies): 15 entry(ies) | Help | Less info |
eye (0.341006) | |
cag (0.302389) | |
fcc (0.197785) | |
nlu (0.191681) | |
nep (0.183925) | |
cut (0.169924) | |
cki (0.165235) | |
nco (0.161734) | |
pty (0.142714) | |
csk (0.140746) | |
che (0.136314) | |
nmm (0.132802) | |
bla (0.124347) | |
eru (0.120048) | |
nbm (0.0993246) |
Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
eye (0.341006) | |
cag (0.302389) | |
fcc (0.197785) | |
nlu (0.191681) | |
nep (0.183925) | |
cut (0.169924) | |
cki (0.165235) | |
nco (0.161734) | |
pty (0.142714) | |
csk (0.140746) | |
che (0.136314) | |
nmm (0.132802) | |
bla (0.124347) | |
eru (0.120048) | |
nbm (0.0993246) |