Non-Coding RNA Search

Ss1.1-Pig4-TMW8051F06.3

Sequence:


               
               ATTTCCTTTGATGCCTCGTCCCATGCCTCCGCACATGATGCATAGAGGTCCACCGCCAGG
AGGACCAGGGGGCTTTGGAATGCCTCCGCCTCATGGAATGAAAGGTCCCTTTCCGCCCCA
TGGCCCCTTTGTTCGGCCTGGTGGAATGCCAGGGCTCGGGGGCCCAGGCCCAGGCCCAGG
GGTTCCTGAAGACAGAGATGGGAGGCAGCAACAGCCGCCACCACCACAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCCGCCGCCACCACAGCCACAGCCACAACAGCAGCCGCCGCC
AACTCAGCAACCACAACCAACTCAGCAGCAATCACAACCATTTAGAAATGATAACAGGCA
GCAGTTCAATTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTCGGAAATAGGGT
GGAAAATGACCGGGAACGGTATGGGAACCGTAATGATGAGAGAGAGAATAGTAATCGCGA
AAGGAGAGAGTGGGGAAGAAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAG
GAATAGACGCTCTAGTGGGCATCGAGACAGAGAGAGAGATTCTAGAGAGTCTCGTAGAGA
GAAGGAAGAAAACCGAGGCAAGGAAAAGCCTGAGGTGACAGACAGAGCAGGTGGTAACAA
AACCGTTGAACCTCCCATTAGCCAAGTGGGAAATGTAGACACTGTTTCAGAACTTGATAA
GGGGGGGGCTGAGTCTGCAGTTGTAAAACCTGAAGAGTTACCTGCTGAGGCTACCTCATC
CGTTGAACCCGAAAAGGATTCTGGCTCAGCAGCAGAGGCTCCTCGTTAGAGACTGGAATT
TGTCTAAACGTGACAGTGACACTTCTGGAGTGTAGAGCTTGAGGTGTACAGATGCTGTAT
TATATTTGCTCCTGCTATATCACAGCCCCACAGTAGTTGGTGGGGAATTGTAAGCAATTT
GATTGCTTCCTTCTATTTAAAAATAGCCACAAAATAACAAAAAATACTGAAAATATGAAT
AAATATTACCCTTTTTGCTGTAACTTTTTAAAAGTTTTGACTTTAAAAAGTTTACAAATC
GTAATTAGAAGTGCTCTCTATTTTTTTTTTTTTTAATTTAAGACAAGGTTAACGGTGAAA
GCTCCTCAAAAACAATAGGGATGTTTTTAATAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCCTTTGATGCCTCGTCCCATGCCTCCGCACATGATGCATAGAGGTCCACCGCCAGG
AGGACCAGGGGGCTTTGGAATGCCTCCGCCTCATGGAATGAAAGGTCCCTTTCCGCCCCA
TGGCCCCTTTGTTCGGCCTGGTGGAATGCCAGGGCTCGGGGGCCCAGGCCCAGGCCCAGG
GGTTCCTGAAGACAGAGATGGGAGGCAGCAACAGCCGCCACCACCACAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCCGCCGCCACCACAGCCACAGCCACAACAGCAGCCGCCGCC
AACTCAGCAACCACAACCAACTCAGCAGCAATCACAACCATTTAGAAATGATAACAGGCA
GCAGTTCAATTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTCGGAAATAGGGT
GGAAAATGACCGGGAACGGTATGGGAACCGTAATGATGAGAGAGAGAATAGTAATCGCGA
AAGGAGAGAGTGGGGAAGAAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAG
GAATAGACGCTCTAGTGGGCATCGAGACAGAGAGAGAGATTCTAGAGAGTCTCGTAGAGA
GAAGGAAGAAAACCGAGGCAAGGAAAAGCCTGAGGTGACAGACAGAGCAGGTGGTAACAA
AACCGTTGAACCTCCCATTAGCCAAGTGGGAAATGTAGACACTGTTTCAGAACTTGATAA
GGGGGGGGCTGAGTCTGCAGTTGTAAAACCTGAAGAGTTACCTGCTGAGGCTACCTCATC
CGTTGAACCCGAAAAGGATTCTGGCTCAGCAGCAGAGGCTCCTCGTTAGAGACTGGAATT
TGTCTAAACGTGACAGTGACACTTCTGGAGTGTAGAGCTTGAGGTGTACAGATGCTGTAT
TATATTTGCTCCTGCTATATCACAGCCCCACAGTAGTTGGTGGGGAATTGTAAGCAATTT
GATTGCTTCCTTCTATTTAAAAATAGCCACAAAATAACAAAAAATACTGAAAATATGAAT
AAATATTACCCTTTTTGCTGTAACTTTTTAAAAGTTTTGACTTTAAAAAGTTTACAAATC
GTAATTAGAAGTGCTCTCTATTTTTTTTTTTTTTAATTTAAGACAAGGTTAACGGTGAAA
GCTCCTCAAAAACAATAGGGATGTTTTTAATAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R1B3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R1B3_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-198, + strand, RNAz p=0.953999
               

               
               864-981, - strand, RNAz p=0.557576

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-198, + strand, RNAz p=0.953999
               

               
               864-981, - strand, RNAz p=0.557576

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               197-323, - strand, RNAmicro p=0.989492

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               197-323, - strand, RNAmicro p=0.989492

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020706, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020706, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1176, gnl|bosTau2|chr1 (2835013-2833842)
               

               
               2-1176, gnl|Hg17|chr21 (31966410-31965233)
               

               
               2-1176, gnl|Mm7|chr16 (90280043-90278894)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1176, gnl|bosTau2|chr1 (2835013-2833842)
               

               
               2-1176, gnl|Hg17|chr21 (31966410-31965233)
               

               
               2-1176, gnl|Mm7|chr16 (90280043-90278894)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.58548)
               

               
               spl (0.286369)
               

               
               cga (0.279096)
               

               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               spl (0.286369)
               

               
               cga (0.279096)
               

               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	39-198, + strand, RNAz p=0.953999
	864-981, - strand, RNAz p=0.557576

	2-1176, gnl\|bosTau2\|chr1 (2835013-2833842)
	2-1176, gnl\|Hg17\|chr21 (31966410-31965233)
	2-1176, gnl\|Mm7\|chr16 (90280043-90278894)

	cte (0.58548)
	spl (0.286369)
	cga (0.279096)
	cje (0.165235)
	che (0.136314)
	ret (0.128733)
	ecc (0.115035)
	spc (0.113366)