Ss1.1-Pig4-TMW8051F12.3
|
TATGGACAGGAAATTTCGTTAACTCCATTCAAACAGCGTTTGCTGCTGGTATTGGCTGGC
TGATCACTTTTTGTTCCAAAGGAGGAGATTGTTTGACTTCACAGACACGTCTCAGGTTAA
GTGGTATGTTGGATGGTCTTGTTAATGTAGGATGGATGGACTGTGCCACCCAGGACAACC
TTTGTAAAAGTTTAGATATTACAACAAGTACTACTGCCTATTTTCCTCCTGGAGCCACTT
TAAATAACAAAGAGAAAAGCAGTATTTTGTTTCTTAATTCTTTGGATGCTAAAGAAATAT
ATTTGGAAATAATGCATAATCTTCCAGATTTTGAACTACTTTCAGCAAACACACTAGAGG
ATCGTTTGGCTCATCATCGGTGGCTCTTATTTTTTTACTTTGGAAAAAATGAATTTTCAA
ATGATCCTGAGTTGAAGAAACTAAAAACTCTACTTAAAAATGAACATATTCAAGTTGGCA
AGTTTGACTGTTCCTCTGCACCAGACATCTGTAGTAATCTCTATGTTTTTCAGCCATGTC
TAGCAGTATTTAAAGGACAGGGAACCAAAGAATTTGAAATTCATCATGGAAAGAAGATTT
TATATGATATACTTGCCTTTGCCAAAGAAAGTGTTAATTCTCATGTTACCACACTTGGAC
CTCAAAATTTTCCCACCAGTGACAAAGAACCATGGCTAGTTGATTTTTTTGCTCCTTGGT
GTCCACCATGTCGAGCTTTATTGCCAGAGTTACGAAAAGCATCAAAGCATCTTTATGGTC
AGCTTAAGTTTGGTACACTAGATTGTACAGTTCACGAGGGACTCTGTAACATGTATAACA
TTCAAGCTTATCCAACAACAGTGGTGTTCAACCAGTCCAACATTCATGAGTATGAAGGTC
ATCACTCTGCTGAACAGATCTTGGAGTTCGTAGAGGATCTTATGAATCCTTCAGTGGTCT
CCTTGACACCCACCACTTTTGATGAACTAGTTAGACAAAGAAAACCTGACGAAGTCTGGA
TGGTTGATTTCTATTCTCCATGGTGTCATCCATGTCAAGTCTTAATGCCAGAATGGAAAA
GAATGGCCCGGACATTAACTGGACTGATCAATGTGGGCAGTATAGACTGCCAGCAATATC
ATTCTTTATGTGCCCAAGAAAATGTTCGGAGATATCCTGAGATAAGATTTTTTCCCCAAA
AATCAAATAAAGCTTATCAGTATCATAGTTACAATGGTTGGAATAGGGATGCTTATTCCC
TGAGAATCTGGGGTCTAGGATTTTTACCTCAAGCATCTATAGATCTAACACCTCAGACTT
TCAATGAAAAAGTTTTACAAGGGAAAAGCCACTGGGTGGTTGATTTCTATGCTCCTTGGT
GTGGACCTTGCCAAAACTTTGCTCCAGAGTTTGAGCTCTTAGCTAGGATGGTTAAAGAAA
AAGTGAAAGCTGGAAAAGTAGACTGTCAGGCTTATGCCCAAACCTGCCAGAAAGCTGGTA
TCAGAGCCTATCCAACTGTTAAATTTTATCCCTATGAAGGGACAAGGAGAAATATTTGGG
GAGAGCAAATAGATTCCAGAGATGCTAAAGAGATTACTACCTTAATATATGAAAAATTGG
AAAATCTCCAAAATCATGGAAAGAGAAATAAGGATGAACTTTAGTGAAGTTGAAAATGAA
GATATTAACAGATGGTATCAGAAGAGACCTCTTCAGAATGTTACTTCATTCTTGATGAAA
ATAAATGAACGTTACCTTGGACTTGTAATTGCACTGCCTGAGTTCTGTACAACTACCGGG
TCTGCAGACTTTTCTGTAAATGTCCAGACCATAAATATTTTAGGCTTTGTAGACCATATA
TGGTTTTTGTCACATATTCTTTGTTTCTGTTTTGTTTACAACCCTTTAAAAATTGTGGAA
ACCATTCTTAGCTCAGGGCCATACACAAATAGGCTGGTCACAAGCCACATTCAGCCCATG
ACCACAGATTGCCGACTCCTGGGAAGATATTTAGACTGGCTCAAATATGAACCTGCTCTG
TGATCTACATACACACAGATTTATCCAAGTGTATTTTATCACAAAGTTTGAGGTTGGCCT
GAAAAGACAACTTGGTTTTCAGTTACCTGTTCTAAGAATTCTCTGAAATTGATTCCCTGA
TCATATATTTTCATTTAAAAAACATACAGTGTGGGAAAGTAAACAGATACCCTATTGTCA
TGCTATATTGTAGTAAAGAGATTCTTCATTTTTTTGTTTGTTTGCTTTCTAAAGGTTGAA
TTTATTTTAGTTTTCACTTGAGAAAAAAATTTTGCAACAATAAGTAAAGAAATCCTCTCG
ATTTCTACAGCATCCATAAGTATGTAACGGGAAAAAATATTTATAGCAATTAACTGGGCA
TTGTACAGTATCCCAAATTAAAGTATTTTGAGTTCTGTGTTTTAAAGATATATGGTCGTT
TTGGAATTGCTTTCATAAAGGTTTTCCCTGTGATAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TATGGACAGGAAATTTCGTTAACTCCATTCAAACAGCGTTTGCTGCTGGTATTGGCTGGC
TGATCACTTTTTGTTCCAAAGGAGGAGATTGTTTGACTTCACAGACACGTCTCAGGTTAA
GTGGTATGTTGGATGGTCTTGTTAATGTAGGATGGATGGACTGTGCCACCCAGGACAACC
TTTGTAAAAGTTTAGATATTACAACAAGTACTACTGCCTATTTTCCTCCTGGAGCCACTT
TAAATAACAAAGAGAAAAGCAGTATTTTGTTTCTTAATTCTTTGGATGCTAAAGAAATAT
ATTTGGAAATAATGCATAATCTTCCAGATTTTGAACTACTTTCAGCAAACACACTAGAGG
ATCGTTTGGCTCATCATCGGTGGCTCTTATTTTTTTACTTTGGAAAAAATGAATTTTCAA
ATGATCCTGAGTTGAAGAAACTAAAAACTCTACTTAAAAATGAACATATTCAAGTTGGCA
AGTTTGACTGTTCCTCTGCACCAGACATCTGTAGTAATCTCTATGTTTTTCAGCCATGTC
TAGCAGTATTTAAAGGACAGGGAACCAAAGAATTTGAAATTCATCATGGAAAGAAGATTT
TATATGATATACTTGCCTTTGCCAAAGAAAGTGTTAATTCTCATGTTACCACACTTGGAC
CTCAAAATTTTCCCACCAGTGACAAAGAACCATGGCTAGTTGATTTTTTTGCTCCTTGGT
GTCCACCATGTCGAGCTTTATTGCCAGAGTTACGAAAAGCATCAAAGCATCTTTATGGTC
AGCTTAAGTTTGGTACACTAGATTGTACAGTTCACGAGGGACTCTGTAACATGTATAACA
TTCAAGCTTATCCAACAACAGTGGTGTTCAACCAGTCCAACATTCATGAGTATGAAGGTC
ATCACTCTGCTGAACAGATCTTGGAGTTCGTAGAGGATCTTATGAATCCTTCAGTGGTCT
CCTTGACACCCACCACTTTTGATGAACTAGTTAGACAAAGAAAACCTGACGAAGTCTGGA
TGGTTGATTTCTATTCTCCATGGTGTCATCCATGTCAAGTCTTAATGCCAGAATGGAAAA
GAATGGCCCGGACATTAACTGGACTGATCAATGTGGGCAGTATAGACTGCCAGCAATATC
ATTCTTTATGTGCCCAAGAAAATGTTCGGAGATATCCTGAGATAAGATTTTTTCCCCAAA
AATCAAATAAAGCTTATCAGTATCATAGTTACAATGGTTGGAATAGGGATGCTTATTCCC
TGAGAATCTGGGGTCTAGGATTTTTACCTCAAGCATCTATAGATCTAACACCTCAGACTT
TCAATGAAAAAGTTTTACAAGGGAAAAGCCACTGGGTGGTTGATTTCTATGCTCCTTGGT
GTGGACCTTGCCAAAACTTTGCTCCAGAGTTTGAGCTCTTAGCTAGGATGGTTAAAGAAA
AAGTGAAAGCTGGAAAAGTAGACTGTCAGGCTTATGCCCAAACCTGCCAGAAAGCTGGTA
TCAGAGCCTATCCAACTGTTAAATTTTATCCCTATGAAGGGACAAGGAGAAATATTTGGG
GAGAGCAAATAGATTCCAGAGATGCTAAAGAGATTACTACCTTAATATATGAAAAATTGG
AAAATCTCCAAAATCATGGAAAGAGAAATAAGGATGAACTTTAGTGAAGTTGAAAATGAA
GATATTAACAGATGGTATCAGAAGAGACCTCTTCAGAATGTTACTTCATTCTTGATGAAA
ATAAATGAACGTTACCTTGGACTTGTAATTGCACTGCCTGAGTTCTGTACAACTACCGGG
TCTGCAGACTTTTCTGTAAATGTCCAGACCATAAATATTTTAGGCTTTGTAGACCATATA
TGGTTTTTGTCACATATTCTTTGTTTCTGTTTTGTTTACAACCCTTTAAAAATTGTGGAA
ACCATTCTTAGCTCAGGGCCATACACAAATAGGCTGGTCACAAGCCACATTCAGCCCATG
ACCACAGATTGCCGACTCCTGGGAAGATATTTAGACTGGCTCAAATATGAACCTGCTCTG
TGATCTACATACACACAGATTTATCCAAGTGTATTTTATCACAAAGTTTGAGGTTGGCCT
GAAAAGACAACTTGGTTTTCAGTTACCTGTTCTAAGAATTCTCTGAAATTGATTCCCTGA
TCATATATTTTCATTTAAAAAACATACAGTGTGGGAAAGTAAACAGATACCCTATTGTCA
TGCTATATTGTAGTAAAGAGATTCTTCATTTTTTTGTTTGTTTGCTTTCTAAAGGTTGAA
TTTATTTTAGTTTTCACTTGAGAAAAAAATTTTGCAACAATAAGTAAAGAAATCCTCTCG
ATTTCTACAGCATCCATAAGTATGTAACGGGAAAAAATATTTATAGCAATTAACTGGGCA
TTGTACAGTATCCCAAATTAAAGTATTTTGAGTTCTGTGTTTTAAAGATATATGGTCGTT
TTGGAATTGCTTTCATAAAGGTTTTCCCTGTGATAG
|
|
gi|14042135|dbj|BAB55121.1| |
Protein identifier
|
gi|14042135|dbj|BAB55121.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-2021, gnl|bosTau2|chr26 (23794347-23796389) |
|
1-2021, gnl|Hg17|chr2 (183420166-183467768) |
|
1-2021, gnl|Mm7|chr2 (80169419-80196942) |
| |
|
1798-1954, gnl|bosTau2|chr10 (59690037-59689879) |
|
1798-1954, gnl|canFam2|chr8 (49587367-49587735) |
|
1798-1954, gnl|dasNov1|scaffold_4677 (30852-31236) |
|
1798-1954, gnl|hg17|chr14 (72740794-72741173) |
|
1798-1954, gnl|Hg17|chr14 (72741081-72740945) |
|
1798-1954, gnl|panTro1|chr15 (72527206-72527587) |
|
1798-1954, gnl|rheMac2|chr7 (136323398-136323771) |
| |
|
2067-2198, gnl|bosTau2|chr26 (23796404-23796544) |
|
2067-2198, gnl|Hg17|chr2 (183467804-183467962) |
|
2067-2198, gnl|Mm7|chr2 (80196986-80197108) |
| |
|
2265-2494, gnl|bosTau2|chr26 (23796550-23796775) |
|
2265-2494, gnl|Hg17|chr2 (183468012-183468290) |
|
2265-2494, gnl|Mm7|chr2 (80197124-80197349) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-2021, gnl|bosTau2|chr26 (23794347-23796389) |
|
1-2021, gnl|Hg17|chr2 (183420166-183467768) |
|
1-2021, gnl|Mm7|chr2 (80169419-80196942) |
| |
|
1798-1954, gnl|bosTau2|chr10 (59690037-59689879) |
|
1798-1954, gnl|canFam2|chr8 (49587367-49587735) |
|
1798-1954, gnl|dasNov1|scaffold_4677 (30852-31236) |
|
1798-1954, gnl|hg17|chr14 (72740794-72741173) |
|
1798-1954, gnl|Hg17|chr14 (72741081-72740945) |
|
1798-1954, gnl|panTro1|chr15 (72527206-72527587) |
|
1798-1954, gnl|rheMac2|chr7 (136323398-136323771) |
| |
|
2067-2198, gnl|bosTau2|chr26 (23796404-23796544) |
|
2067-2198, gnl|Hg17|chr2 (183467804-183467962) |
|
2067-2198, gnl|Mm7|chr2 (80196986-80197108) |
| |
|
2265-2494, gnl|bosTau2|chr26 (23796550-23796775) |
|
2265-2494, gnl|Hg17|chr2 (183468012-183468290) |
|
2265-2494, gnl|Mm7|chr2 (80197124-80197349) |
|
lyg (1.06482) |
|
vin (0.997672) |
|
amn (0.835422) |
|
gul (0.710353) |
|
rec (0.692281) |
|
spc (0.680195) |
|
aor (0.585823) |
|
cbl (0.573987) |
|
pro (0.512033) |
|
tbr (0.462535) |
|
fat (0.442282) |
|
lin (0.436808) |
|
pty (0.428143) |
|
hea (0.408998) |
|
ova (0.387397) |
|
ret (0.3862) |
|
tra (0.369276) |
|
fco (0.314416) |
|
sme (0.305437) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
ski (0.29347) |
|
csk (0.281492) |
|
ste (0.270416) |
|
med (0.232504) |
|
col (0.195008) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
sto (0.179824) |
|
ton (0.1755) |
|
mga (0.160205) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
sug (0.127291) |
|
ese (0.126502) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
lyg (1.06482) |
|
vin (0.997672) |
|
amn (0.835422) |
|
gul (0.710353) |
|
rec (0.692281) |
|
spc (0.680195) |
|
aor (0.585823) |
|
cbl (0.573987) |
|
pro (0.512033) |
|
tbr (0.462535) |
|
fat (0.442282) |
|
lin (0.436808) |
|
pty (0.428143) |
|
hea (0.408998) |
|
ova (0.387397) |
|
ret (0.3862) |
|
tra (0.369276) |
|
fco (0.314416) |
|
sme (0.305437) |
|
isp (0.300752) |
|
bfe (0.299715) |
|
ski (0.29347) |
|
csk (0.281492) |
|
ste (0.270416) |
|
med (0.232504) |
|
col (0.195008) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
sto (0.179824) |
|
ton (0.1755) |
|
mga (0.160205) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
sug (0.127291) |
|
ese (0.126502) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
eje (0.0988338) |
