Non-Coding RNA Search

Ss1.1-Pig4-TMW8051F18.5

Sequence:


               
               TAATAATAGGACATTAGAGTCAACCTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAA
ATTAGAGGAGAAGATCAAAGAGCCAATTAAAGAACCTTCCGAAGAGCCTCTGCCAATGGA
GACAGAGGAGGAGGATCCTAAAGAAGAGCCGATCAAGGAGATAAAGGAGGAGCCCAAAGA
AGAGGAGATGACTGAAGAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACCCC
TATTCCGGGTACTCCATGGTGTGTTGTTTGGACGGGTGATGAGCGCGTCTTCTTTTACAA
CCCTACCACCCGTCTGTCCATGTGGGACCGGCCCGATGATCTGATTGGAAGGGCAGACGT
TGACAAAATTATTCAGGAGCCCCCTCATAAGAAAGGCATGGAAGAAGTGAAGAAGCTAAG
GCACCCGACCCCAACAATGCTGTCCATCCAAAAGTGGCAGTTCTCGATGAGTGCAATTAA
AGAAGAACAAGAGTTAATGGAAGAAATGAATGAAGATGAACCTGTTAAAGCCAAAAAGCG
GAAGAGAGACGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAGCTGAAAT
TAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCCCGAATGAAGCAGTTCAAGGA
CATGCTGCTAGAGAGAGGGGTGTCTGCTTTTTCAACATGGGAGAAGGAGTTACACAAGAT
AGTTTTTGATCCTCGGTACTTACTGCTCAATCCAAAAGAGAGGAAACAGGTATTTGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATAATAGGACATTAGAGTCAACCTGGGAAAAGCCCCAAGAACTGAAGGAAAAAGAAAA
ATTAGAGGAGAAGATCAAAGAGCCAATTAAAGAACCTTCCGAAGAGCCTCTGCCAATGGA
GACAGAGGAGGAGGATCCTAAAGAAGAGCCGATCAAGGAGATAAAGGAGGAGCCCAAAGA
AGAGGAGATGACTGAAGAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACCCC
TATTCCGGGTACTCCATGGTGTGTTGTTTGGACGGGTGATGAGCGCGTCTTCTTTTACAA
CCCTACCACCCGTCTGTCCATGTGGGACCGGCCCGATGATCTGATTGGAAGGGCAGACGT
TGACAAAATTATTCAGGAGCCCCCTCATAAGAAAGGCATGGAAGAAGTGAAGAAGCTAAG
GCACCCGACCCCAACAATGCTGTCCATCCAAAAGTGGCAGTTCTCGATGAGTGCAATTAA
AGAAGAACAAGAGTTAATGGAAGAAATGAATGAAGATGAACCTGTTAAAGCCAAAAAGCG
GAAGAGAGACGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAGCTGAAAT
TAAAGCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCCCGAATGAAGCAGTTCAAGGA
CATGCTGCTAGAGAGAGGGGTGTCTGCTTTTTCAACATGGGAGAAGGAGTTACACAAGAT
AGTTTTTGATCCTCGGTACTTACTGCTCAATCCAAAAGAGAGGAAACAGGTATTTGATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61827623|ref|XP_589357.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61827623|ref|XP_589357.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               52-170, gnl|bosTau2|chr7 (38571832-38571950)
               

               
               52-170, gnl|Hg17|chr5 (145830387-145830505)
               

               
               52-170, gnl|Mm7|chr18 (42914770-42914888)
               


               
               250-420, gnl|bosTau2|chr7 (38579943-38580113)
               

               
               250-420, gnl|Hg17|chr5 (145838240-145838410)
               

               
               250-420, gnl|Mm7|chr18 (42926301-42926471)
               


               
               544-681, gnl|bosTau2|chr7 (38583915-38584052)
               

               
               544-681, gnl|Hg17|chr5 (145842348-145842485)
               

               
               544-681, gnl|Mm7|chr18 (42930405-42930542)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-170, gnl|bosTau2|chr7 (38571832-38571950)
               

               
               52-170, gnl|Hg17|chr5 (145830387-145830505)
               

               
               52-170, gnl|Mm7|chr18 (42914770-42914888)
               


               
               250-420, gnl|bosTau2|chr7 (38579943-38580113)
               

               
               250-420, gnl|Hg17|chr5 (145838240-145838410)
               

               
               250-420, gnl|Mm7|chr18 (42926301-42926471)
               


               
               544-681, gnl|bosTau2|chr7 (38583915-38584052)
               

               
               544-681, gnl|Hg17|chr5 (145842348-145842485)
               

               
               544-681, gnl|Mm7|chr18 (42930405-42930542)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	52-170, gnl\|bosTau2\|chr7 (38571832-38571950)
	52-170, gnl\|Hg17\|chr5 (145830387-145830505)
	52-170, gnl\|Mm7\|chr18 (42914770-42914888)

	250-420, gnl\|bosTau2\|chr7 (38579943-38580113)
	250-420, gnl\|Hg17\|chr5 (145838240-145838410)
	250-420, gnl\|Mm7\|chr18 (42926301-42926471)

	544-681, gnl\|bosTau2\|chr7 (38583915-38584052)
	544-681, gnl\|Hg17\|chr5 (145842348-145842485)
	544-681, gnl\|Mm7\|chr18 (42930405-42930542)