Ss1.1-Pig4-TMW8051F22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCGGCAGCGGTAGGAGAGAGCACCCGGGGCAGCGCGAGCGCGGGGCCACCGTAGACAG CGGCAGCGACACCGGCAGAGCAAGGGCGCGGCGGATCCCACGCGAACAGCAGCGCACTCG GTGCCCCGCGCAGGGTCGCGATGCTGCCCGGTTTGGCACTGGTCCTGCTGGCCGCCTGGA CGGCTCGGGCGCTGGAGGTGCCCACTGATGGCAATGCCGGCCTGCTTGCAGAACCCCAGG TTGCCATGTTCTGTGGCAAACTCAACATGCACATGAATGTGCAGAATGGGAAGTGGGAGT CAGATCCGTCGGGGACCAAAACCTGCATTGGCACCAAGGAAGGCATCTTGCAGTACTGCC AAGAAGTCTACCCTGAACTGCAGATCACCAATGTGGTAGAAGCCAACCAACCAGTGACCA TCCAGAACTGGTGCAAGAGGAGCCGGAAGCAGTGCAAGACCCACACTCACATTGTGATTC CGTACCGCTGCTTAGTTGGCGAGTTTGTAAGCGATGCCCTCCTTGTTCCGGACAAGTGCA AGTTCTTACACCAGGAGAGGATGGATGTTTGCGAAACCCACCTTCACTGGCACACTGTGG CCAAAGAGACCTGTAGTGAGAAGAGTACGAACTTGCATGACTATGGCATGTTGCTGCCCT GTGGAATTGACAAGTTCCGAGGGGTGGAGTTTGTGTGTTGCCCACTGGCCGAGGAAAGTG ACAATATCGACTCAGCAGATGCAGAAGAGGATGACTCGGACGTCTGGTGGGGTGGAGCAG ATACAGACTATGCAGATGGCAGTGAAGACAAAGTCGTGGAGGTCGCAGAGGAGGAGGAAG TGGCTGATGTCGAGGAAGAAGAAGCTGAGGATGATGAGGATGATGAGGATGGTGATGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCGGCAGCGGTAGGAGAGAGCACCCGGGGCAGCGCGAGCGCGGGGCCACCGTAGACAG CGGCAGCGACACCGGCAGAGCAAGGGCGCGGCGGATCCCACGCGAACAGCAGCGCACTCG GTGCCCCGCGCAGGGTCGCGATGCTGCCCGGTTTGGCACTGGTCCTGCTGGCCGCCTGGA CGGCTCGGGCGCTGGAGGTGCCCACTGATGGCAATGCCGGCCTGCTTGCAGAACCCCAGG TTGCCATGTTCTGTGGCAAACTCAACATGCACATGAATGTGCAGAATGGGAAGTGGGAGT CAGATCCGTCGGGGACCAAAACCTGCATTGGCACCAAGGAAGGCATCTTGCAGTACTGCC AAGAAGTCTACCCTGAACTGCAGATCACCAATGTGGTAGAAGCCAACCAACCAGTGACCA TCCAGAACTGGTGCAAGAGGAGCCGGAAGCAGTGCAAGACCCACACTCACATTGTGATTC CGTACCGCTGCTTAGTTGGCGAGTTTGTAAGCGATGCCCTCCTTGTTCCGGACAAGTGCA AGTTCTTACACCAGGAGAGGATGGATGTTTGCGAAACCCACCTTCACTGGCACACTGTGG CCAAAGAGACCTGTAGTGAGAAGAGTACGAACTTGCATGACTATGGCATGTTGCTGCCCT GTGGAATTGACAAGTTCCGAGGGGTGGAGTTTGTGTGTTGCCCACTGGCCGAGGAAAGTG ACAATATCGACTCAGCAGATGCAGAAGAGGATGACTCGGACGTCTGGTGGGGTGGAGCAG ATACAGACTATGCAGATGGCAGTGAAGACAAAGTCGTGGAGGTCGCAGAGGAGGAGGAAG TGGCTGATGTCGAGGAAGAAGAAGCTGAGGATGATGAGGATGATGAGGATGGTGATGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 687-806, + strand, RNAz p=0.50948 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 687-806, + strand, RNAz p=0.50948 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-200, gnl|bosTau2|chr1 (5158359-5158153) | |
| 1-200, gnl|Hg17|chr21 (26464951-26464750) | |
| 1-200, gnl|Mm7|chr16 (85172850-85172650) | |
| 366-498, gnl|bosTau2|chr1 (5064008-5063876) | |
| 366-498, gnl|canFam2|chr31 (24552692-24552850) | |
| 366-498, gnl|danRer3|chrNA (62175272-62175417) | |
| 366-498, gnl|dasNov1|scaffold_34377 (3042-2887) | |
| 366-498, gnl|echTel1|scaffold_317651 (160442-160600) | |
| 366-498, gnl|fr1|chrUn (284716593-284716748) | |
| 366-498, gnl|hg17|chr21 (26384120-26384278) | |
| 366-498, gnl|Hg17|chr21 (26384259-26384127) | |
| 366-498, gnl|loxAfr1|scaffold_591 (60212-60054) | |
| 366-498, gnl|mm7|chr16 (85101977-85102134) | |
| 366-498, gnl|Mm7|chr16 (85102116-85101984) | |
| 366-498, gnl|monDom2|scaffold_29 (6544222-6544063) | |
| 366-498, gnl|panTro1|chr22 (26380729-26380887) | |
| 366-498, gnl|rheMac2|chr3 (20571512-20571354) | |
| 366-498, gnl|rn3|chr11 (24623856-24624013) | |
| 366-498, gnl|tetNig1|chr2 (9353678-9353531) | |
| 366-498, gnl|xenTro1|scaffold_114 (968371-968525) | |
| 607-807, gnl|bosTau2|chr1 (5028454-5028254) | |
| 607-807, gnl|canFam2|chr31 (24520613-24520839) | |
| 607-807, gnl|danRer3|chrNA (62171422-62171645) | |
| 607-807, gnl|echTel1|scaffold_317651 (121142-121368) | |
| 607-807, gnl|fr1|chrUn (284715943-284716154) | |
| 607-807, gnl|galGal2|chr1 (96483847-96484082) | |
| 607-807, gnl|hg17|chr21 (26345180-26345406) | |
| 607-807, gnl|Hg17|chr21 (26345382-26345182) | |
| 607-807, gnl|loxAfr1|scaffold_591 (91538-91312) | |
| 607-807, gnl|mm7|chr16 (85078708-85078933) | |
| 607-807, gnl|Mm7|chr16 (85078910-85078710) | |
| 607-807, gnl|monDom2|scaffold_29 (6563992-6563765) | |
| 607-807, gnl|oryCun1|scaffold_202416 (204303-204525) | |
| 607-807, gnl|panTro1|chr22 (26340974-26341200) | |
| 607-807, gnl|rheMac2|chr3 (20610127-20609901) | |
| 607-807, gnl|rn3|chr11 (24599807-24600032) | |
| 607-807, gnl|tetNig1|chr2 (9354201-9353982) | |
| 607-807, gnl|xenTro1|scaffold_114 (954937-955150) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-200, gnl|bosTau2|chr1 (5158359-5158153) | |
| 1-200, gnl|Hg17|chr21 (26464951-26464750) | |
| 1-200, gnl|Mm7|chr16 (85172850-85172650) | |
| 366-498, gnl|bosTau2|chr1 (5064008-5063876) | |
| 366-498, gnl|canFam2|chr31 (24552692-24552850) | |
| 366-498, gnl|danRer3|chrNA (62175272-62175417) | |
| 366-498, gnl|dasNov1|scaffold_34377 (3042-2887) | |
| 366-498, gnl|echTel1|scaffold_317651 (160442-160600) | |
| 366-498, gnl|fr1|chrUn (284716593-284716748) | |
| 366-498, gnl|hg17|chr21 (26384120-26384278) | |
| 366-498, gnl|Hg17|chr21 (26384259-26384127) | |
| 366-498, gnl|loxAfr1|scaffold_591 (60212-60054) | |
| 366-498, gnl|mm7|chr16 (85101977-85102134) | |
| 366-498, gnl|Mm7|chr16 (85102116-85101984) | |
| 366-498, gnl|monDom2|scaffold_29 (6544222-6544063) | |
| 366-498, gnl|panTro1|chr22 (26380729-26380887) | |
| 366-498, gnl|rheMac2|chr3 (20571512-20571354) | |
| 366-498, gnl|rn3|chr11 (24623856-24624013) | |
| 366-498, gnl|tetNig1|chr2 (9353678-9353531) | |
| 366-498, gnl|xenTro1|scaffold_114 (968371-968525) | |
| 607-807, gnl|bosTau2|chr1 (5028454-5028254) | |
| 607-807, gnl|canFam2|chr31 (24520613-24520839) | |
| 607-807, gnl|danRer3|chrNA (62171422-62171645) | |
| 607-807, gnl|echTel1|scaffold_317651 (121142-121368) | |
| 607-807, gnl|fr1|chrUn (284715943-284716154) | |
| 607-807, gnl|galGal2|chr1 (96483847-96484082) | |
| 607-807, gnl|hg17|chr21 (26345180-26345406) | |
| 607-807, gnl|Hg17|chr21 (26345382-26345182) | |
| 607-807, gnl|loxAfr1|scaffold_591 (91538-91312) | |
| 607-807, gnl|mm7|chr16 (85078708-85078933) | |
| 607-807, gnl|Mm7|chr16 (85078910-85078710) | |
| 607-807, gnl|monDom2|scaffold_29 (6563992-6563765) | |
| 607-807, gnl|oryCun1|scaffold_202416 (204303-204525) | |
| 607-807, gnl|panTro1|chr22 (26340974-26341200) | |
| 607-807, gnl|rheMac2|chr3 (20610127-20609901) | |
| 607-807, gnl|rn3|chr11 (24599807-24600032) | |
| 607-807, gnl|tetNig1|chr2 (9354201-9353982) | |
| 607-807, gnl|xenTro1|scaffold_114 (954937-955150) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fce (0.271592) | |
| cov (0.264306) | |
| eru (0.240096) | |
| med (0.232504) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| ute (0.132784) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| cov (0.264306) | |
| eru (0.240096) | |
| med (0.232504) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| ute (0.132784) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |