Ss1.1-Pig4-TMW8051G05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGGGCGGCGTCATGTCCTCCGAGGTGGCCGCGCGCCGCGATGCCAAGAAGCTGGTG CGCTCCCCCAGCGGCCTGCGCATGGTGCCGGAGCACCGCGCCTTCGGCAGCCCGTTCGGC CTGGAGGAGCCGCAGTGGGTCCCGGACAAGGAGTGCCCGAGGTGCATGCAGTGTGGCGCC AAGTTTGACTTCCTCACCAGGAAGCACCACTGTCGCCGGTGTGGGAAGTGCTTCTGCGAC AAGTGCTGCAGCCAGAAGGTGGCGCTGCGGCGCATGTGCTTCGTGGACCCGGTGCGGCAG TGCGCGGAGTGCGCCCTGGTGTCGCACCGGGAGGCCGAGTTCTTCGACAAGCAGCTCAAG GTGCTCCTGAGCGGAGCCACCTTCCTCGTCACTTTCGGCCACTCGGAGAAACCGGAAACG ATGGTGTGTCGCCTTTCCAACAACCAGAGATTCTTGCTTCTGGACGGGAGCAGCCGCCAC GAGGTGGAGATCGCCCGCATTTCCGCCGTGCAGATGCTCAGCGAAGGCTTCCCTCCCGGA GGAGGCAACGCGCGGGCCACGGGCATGTCCCTGCAGTACCCAGCACCGGGGGCAGAGGGC GTGACGCAGCTGAAGCTGACGGCCGGGGAGGACGCAAATGGCAGCAGGAGGCAGGCGACA GCGTGGCTGGCAGCCATGCACAAGGCCGCCAAGCTCCTCTACGAGTCTCGGGACCAGTAG CTGCAGGCGGGCTGGACCCCGCGCCGGGCGGTGGCGCCTGCTCTCTGAGCGCGTGCGCGC GGGCGTGACTAACCCCACACGTGCTGGAAACGCAGCTCAAGTATTCATTCGGCGCTTACC TAGTGCAATATGGAGACGGCTGATTAACGGAGCTCATGCTTTATTTAGAGTGGGTTATCG TGATACTTAATCAGGGGTGGGAGAGCCCGAGCTACACTACTGCTGAACTGTTTTTAGCAT AATCTCTACCATGTCTTTACGAGTGCCCAAGTTTCCTAGAAGCTTCTGGCCCCTTGATGT TCATGCTATTAATTCTTCCACGGGAATGACCTGAGCAGTGACAGCCTGGCCTGATTTCTA ACACACCAGTTTAGAGTCTGCCTGAGCCCATTCTAGAGACTGTCTGCTGCGTCACTAATT TGGGGCCCTGAACAAACCTTTGCTACTTCACAGAGGGAGGGAGGGAGCAAGCTGTGTGTT TTGTACTTTTCACTTACTAGTTCACTTTATCAAAGTAACTGTACGACGATTTGTATATAC AACCTGTGATTAAAACCTATTTTGAAAATAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGGGCGGCGTCATGTCCTCCGAGGTGGCCGCGCGCCGCGATGCCAAGAAGCTGGTG CGCTCCCCCAGCGGCCTGCGCATGGTGCCGGAGCACCGCGCCTTCGGCAGCCCGTTCGGC CTGGAGGAGCCGCAGTGGGTCCCGGACAAGGAGTGCCCGAGGTGCATGCAGTGTGGCGCC AAGTTTGACTTCCTCACCAGGAAGCACCACTGTCGCCGGTGTGGGAAGTGCTTCTGCGAC AAGTGCTGCAGCCAGAAGGTGGCGCTGCGGCGCATGTGCTTCGTGGACCCGGTGCGGCAG TGCGCGGAGTGCGCCCTGGTGTCGCACCGGGAGGCCGAGTTCTTCGACAAGCAGCTCAAG GTGCTCCTGAGCGGAGCCACCTTCCTCGTCACTTTCGGCCACTCGGAGAAACCGGAAACG ATGGTGTGTCGCCTTTCCAACAACCAGAGATTCTTGCTTCTGGACGGGAGCAGCCGCCAC GAGGTGGAGATCGCCCGCATTTCCGCCGTGCAGATGCTCAGCGAAGGCTTCCCTCCCGGA GGAGGCAACGCGCGGGCCACGGGCATGTCCCTGCAGTACCCAGCACCGGGGGCAGAGGGC GTGACGCAGCTGAAGCTGACGGCCGGGGAGGACGCAAATGGCAGCAGGAGGCAGGCGACA GCGTGGCTGGCAGCCATGCACAAGGCCGCCAAGCTCCTCTACGAGTCTCGGGACCAGTAG CTGCAGGCGGGCTGGACCCCGCGCCGGGCGGTGGCGCCTGCTCTCTGAGCGCGTGCGCGC GGGCGTGACTAACCCCACACGTGCTGGAAACGCAGCTCAAGTATTCATTCGGCGCTTACC TAGTGCAATATGGAGACGGCTGATTAACGGAGCTCATGCTTTATTTAGAGTGGGTTATCG TGATACTTAATCAGGGGTGGGAGAGCCCGAGCTACACTACTGCTGAACTGTTTTTAGCAT AATCTCTACCATGTCTTTACGAGTGCCCAAGTTTCCTAGAAGCTTCTGGCCCCTTGATGT TCATGCTATTAATTCTTCCACGGGAATGACCTGAGCAGTGACAGCCTGGCCTGATTTCTA ACACACCAGTTTAGAGTCTGCCTGAGCCCATTCTAGAGACTGTCTGCTGCGTCACTAATT TGGGGCCCTGAACAAACCTTTGCTACTTCACAGAGGGAGGGAGGGAGCAAGCTGTGTGTT TTGTACTTTTCACTTACTAGTTCACTTTATCAAAGTAACTGTACGACGATTTGTATATAC AACCTGTGATTAAAACCTATTTTGAAAATAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 203-374, gnl|bosTau2|chr21 (48573494-48573665) | |
| 203-374, gnl|canFam2|chr8 (74504527-74504706) | |
| 203-374, gnl|danRer3|chr13 (40558798-40558622) | |
| 203-374, gnl|dasNov1|scaffold_109005 (5505-5319) | |
| 203-374, gnl|echTel1|scaffold_291641 (94082-93898) | |
| 203-374, gnl|fr1|chrUn (273496056-273495856) | |
| 203-374, gnl|galGal2|chr5 (47278696-47278889) | |
| 203-374, gnl|hg17|chr14 (103263834-103264056) | |
| 203-374, gnl|Hg17|chr14 (103263834-103264005) | |
| 203-374, gnl|loxAfr1|scaffold_23559 (94-270) | |
| 203-374, gnl|mm7|chr12 (109348698-109348886) | |
| 203-374, gnl|Mm7|chr12 (109348698-109348869) | |
| 203-374, gnl|monDom2|scaffold_6 (88434163-88434366) | |
| 203-374, gnl|panTro1|chr15 (103890344-103890566) | |
| 203-374, gnl|rheMac2|chr7 (167085702-167085922) | |
| 203-374, gnl|rn3|chr6 (136621944-136622120) | |
| 203-374, gnl|tetNig1|chr10 (12527536-12527715) | |
| 203-374, gnl|xenTro1|scaffold_127 (1719191-1719370) | |
| 683-1291, gnl|bosTau2|chr21 (48575968-48576529) | |
| 683-1291, gnl|Hg17|chr14 (103269071-103269755) | |
| 683-1291, gnl|Mm7|chr12 (109352761-109353332) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-374, gnl|bosTau2|chr21 (48573494-48573665) | |
| 203-374, gnl|canFam2|chr8 (74504527-74504706) | |
| 203-374, gnl|danRer3|chr13 (40558798-40558622) | |
| 203-374, gnl|dasNov1|scaffold_109005 (5505-5319) | |
| 203-374, gnl|echTel1|scaffold_291641 (94082-93898) | |
| 203-374, gnl|fr1|chrUn (273496056-273495856) | |
| 203-374, gnl|galGal2|chr5 (47278696-47278889) | |
| 203-374, gnl|hg17|chr14 (103263834-103264056) | |
| 203-374, gnl|Hg17|chr14 (103263834-103264005) | |
| 203-374, gnl|loxAfr1|scaffold_23559 (94-270) | |
| 203-374, gnl|mm7|chr12 (109348698-109348886) | |
| 203-374, gnl|Mm7|chr12 (109348698-109348869) | |
| 203-374, gnl|monDom2|scaffold_6 (88434163-88434366) | |
| 203-374, gnl|panTro1|chr15 (103890344-103890566) | |
| 203-374, gnl|rheMac2|chr7 (167085702-167085922) | |
| 203-374, gnl|rn3|chr6 (136621944-136622120) | |
| 203-374, gnl|tetNig1|chr10 (12527536-12527715) | |
| 203-374, gnl|xenTro1|scaffold_127 (1719191-1719370) | |
| 683-1291, gnl|bosTau2|chr21 (48575968-48576529) | |
| 683-1291, gnl|Hg17|chr14 (103269071-103269755) | |
| 683-1291, gnl|Mm7|chr12 (109352761-109353332) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pla (0.534688) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nco (0.161734) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| sin (0.174948) | |
| rec (0.17307) | |
| nco (0.161734) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| cly (0.120642) | |
| jca (0.11396) |