Non-Coding RNA Search

Ss1.1-Pig4-TMW8051G15.3

Sequence:


               
               GCGGAATGGTGCCACGGTGCCAGGTTGAAGTGTTGTATTTTGCAAAAAGTGCTGAAATAG
CAGGAATTCGCTCAGAGACCATTTCTGTGCCACAAGAAATAAAAGCATTGCAGCTGTGGA
ATGAGATAGAAACTCGCCATCCTGGATTGGCTGATGTCAGAAATCAGGTGATACTTGCTG
TTCGTCAGGAATATGTCGAGCTTGGAGATCAGCTCCTCCTGTTGCAATCAGGAGATGAAA
TTGCCATTATCCCCCCCATTAGTGGAGGGTAGTGCTTTCGTGCCACCTGGGAAAGATATG
AATGAAGTTGAAGAGAAATCTAAAGATATAATAAAGTTCACCTCTGAGAAACTTTCAATA
GATGAAGCTTCACAGCTGGTGATTTCTCCTGTCTGCGGTGCAGTATCCCTATTTGTAGGA
ACTACAAGGAATAACTTTGAAGGCAAGAAAGTCATTAGCTTAGAGTATGAAGCATACCTA
CCAATGGCAGAAAATGAAGTCAGAAAAATTTGTAGTGACATTAGGCAGAAATGGCCAGTC
AGACATATAGCAGTGTTCCATCGACTTGGCTTAGTTCCAGTGTCAGAAGCTAGCATTATC
ATTGCTGTGTCATCAGCCCACAGGGCTGCATCACTTGAAGCTGTGAGCTATGCCATTGAT
AATTTAAAAGCCAAGGTGCCCATATGGAAAAAGCAGGCTTACCAACCTTAATGGAGAAAG
TGAATTTTGGACCAATGTCTTCAAAACTGTGCACTGTAGAAGGAATATTCCCATCCGAGG
AGACTTCATAAAAATTAATGTTGGTGAACCTGTTGAGTGATGTTCATAAAGTCAAATATT
TTAGTTATGCTATTATTCTTGAGGCTTAATACTTATTTAAACATCTTCTAGCTTCTAAGT
AAAAGAATTTACATGTAAGTACAATAAATGAAAACAAATGCTTGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAATGGTGCCACGGTGCCAGGTTGAAGTGTTGTATTTTGCAAAAAGTGCTGAAATAG
CAGGAATTCGCTCAGAGACCATTTCTGTGCCACAAGAAATAAAAGCATTGCAGCTGTGGA
ATGAGATAGAAACTCGCCATCCTGGATTGGCTGATGTCAGAAATCAGGTGATACTTGCTG
TTCGTCAGGAATATGTCGAGCTTGGAGATCAGCTCCTCCTGTTGCAATCAGGAGATGAAA
TTGCCATTATCCCCCCCATTAGTGGAGGGTAGTGCTTTCGTGCCACCTGGGAAAGATATG
AATGAAGTTGAAGAGAAATCTAAAGATATAATAAAGTTCACCTCTGAGAAACTTTCAATA
GATGAAGCTTCACAGCTGGTGATTTCTCCTGTCTGCGGTGCAGTATCCCTATTTGTAGGA
ACTACAAGGAATAACTTTGAAGGCAAGAAAGTCATTAGCTTAGAGTATGAAGCATACCTA
CCAATGGCAGAAAATGAAGTCAGAAAAATTTGTAGTGACATTAGGCAGAAATGGCCAGTC
AGACATATAGCAGTGTTCCATCGACTTGGCTTAGTTCCAGTGTCAGAAGCTAGCATTATC
ATTGCTGTGTCATCAGCCCACAGGGCTGCATCACTTGAAGCTGTGAGCTATGCCATTGAT
AATTTAAAAGCCAAGGTGCCCATATGGAAAAAGCAGGCTTACCAACCTTAATGGAGAAAG
TGAATTTTGGACCAATGTCTTCAAAACTGTGCACTGTAGAAGGAATATTCCCATCCGAGG
AGACTTCATAAAAATTAATGTTGGTGAACCTGTTGAGTGATGTTCATAAAGTCAAATATT
TTAGTTATGCTATTATTCTTGAGGCTTAATACTTATTTAAACATCTTCTAGCTTCTAAGT
AAAAGAATTTACATGTAAGTACAATAAATGAAAACAAATGCTTGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55729227|emb|CAH91349.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55729227|emb|CAH91349.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               694-813, + strand, RNAz p=0.745124

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               694-813, + strand, RNAz p=0.745124

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-625, gnl|bosTau2|chr12 (2857547-2856927)
               

               
               1-625, gnl|Hg17|chr5 (52440233-52432066)
               

               
               1-625, gnl|Mm7|chr13 (111991650-111998518)
               


               
               694-938, gnl|bosTau2|chr20 (14519378-14519124)
               

               
               694-938, gnl|Hg17|chr5 (52410474-52410224)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-625, gnl|bosTau2|chr12 (2857547-2856927)
               

               
               1-625, gnl|Hg17|chr5 (52440233-52432066)
               

               
               1-625, gnl|Mm7|chr13 (111991650-111998518)
               


               
               694-938, gnl|bosTau2|chr20 (14519378-14519124)
               

               
               694-938, gnl|Hg17|chr5 (52410474-52410224)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               liv (0.292569)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

	1-625, gnl\|bosTau2\|chr12 (2857547-2856927)
	1-625, gnl\|Hg17\|chr5 (52440233-52432066)
	1-625, gnl\|Mm7\|chr13 (111991650-111998518)

	694-938, gnl\|bosTau2\|chr20 (14519378-14519124)
	694-938, gnl\|Hg17\|chr5 (52410474-52410224)

	liv (0.292569)
	mas (0.210305)
	nep (0.183925)
	fhi (0.169578)
	nca (0.136874)
	sug (0.127291)
	cty (0.10408)