Ss1.1-Pig4-TMW8051G16.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCGGCCGCTGATGGAAGGCGGCGCCCCGGCGGGCGAGCGACGGCGCCGCGGCCACCATGG GGAACAAGCAGACCATCTTCACCGAAGAGCAGCTGGACAACTACCAGGACTGCACCTTCT TCAATAAGAAGGACATCCTCAAGCTACATGCACGGTTCTATGAGCTGGCCCCCAACCTCG TCCCGATGGACTACAGGAAGAGCCCCATCGTCCATGTGCCCATGAGCCTTATCATCCAGA TGCCGGAGCTCCGGGAGAATCCCTTCAAGGAAAGGATTGTGGAGGCTTTTTCTGAGGACG GGGAGGGGAACCTCACCTTCAACGACTTCGTGGACATGTTTTCTGTGCTCTGTGAGTCGG CTCCCCGCGAGCTCAAGGCCAACTATGCCTTTAAGATCTACGACTTCAACACTGACAACT TCATCTGCAAGGAGGACCTGGAGCTGACGCTGGCCCGGCTCACCAAGTCGGAGCTGGACG AGGACGAGGTGGTGCTCGTGTGCGACAAGGTCATTGAGGAGGCCGATCTAGATGGCGACG GCAAGCTGGGCTTCGCTGACTTCGAGGACATGATCGCCAAGGCCCCTGACTTCCTCAGCA CTTTCCACATCCGGATCTGAGGACATTGCTGAGGTTGCAGGGGCCCAGAAGCTGACCGTC CAGCTGTGCCGCCTCCACCAGTATGACCTTCAAGCTCCCCAGGAGAGGAGCGGTGGTCTC TGGGGTTGACACCCACCAACATTTCCTCGGCCCTTTCAGCAAAAAATCCTCAACCAGGGC AGGGGGTGCTGTGTGAAGCAGGGCCCTTCCCAGTGCCCCCGTGGTCCAGCCACAGGACCC AAGGCCCGTCCACAGGCCCTGCCACGGTCCCCCGACCTTCCTCACACCCTGGTCCCCTCC CGATCAGAAACAGCCCCACTGAGAGGAGAAGGCAGAACACCTACCAGGCCAGGGCTATTG ACGCGTCCGAGCGCTGGGCAGGCACCCCGGCTGCCCAGGGAAAAGTGAAGGGGAAAAAAT GGAGAGGACAAGACTTGAAAGAGCTATGCAATCTTTCTCCAAAGCCCACAGCCGGGCTGC GCCCCAGCCCCGCCTGCCTCTTCCCCCGCCCCTTCCCAATGTGAATGGTCAGTCCAAGGG CTCTGTCCCTGTCCCCGTCCCTGTCCAGGTCCCAAGCACCACCCCATCCGCCTCCCCAAT GGCGTGGGATCCTCACTGGTGTGTGCTGTCCACCGATTTGTGAATTCCTGGTAGTAAAAC ACTTTCACATCC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCGGCCGCTGATGGAAGGCGGCGCCCCGGCGGGCGAGCGACGGCGCCGCGGCCACCATGG GGAACAAGCAGACCATCTTCACCGAAGAGCAGCTGGACAACTACCAGGACTGCACCTTCT TCAATAAGAAGGACATCCTCAAGCTACATGCACGGTTCTATGAGCTGGCCCCCAACCTCG TCCCGATGGACTACAGGAAGAGCCCCATCGTCCATGTGCCCATGAGCCTTATCATCCAGA TGCCGGAGCTCCGGGAGAATCCCTTCAAGGAAAGGATTGTGGAGGCTTTTTCTGAGGACG GGGAGGGGAACCTCACCTTCAACGACTTCGTGGACATGTTTTCTGTGCTCTGTGAGTCGG CTCCCCGCGAGCTCAAGGCCAACTATGCCTTTAAGATCTACGACTTCAACACTGACAACT TCATCTGCAAGGAGGACCTGGAGCTGACGCTGGCCCGGCTCACCAAGTCGGAGCTGGACG AGGACGAGGTGGTGCTCGTGTGCGACAAGGTCATTGAGGAGGCCGATCTAGATGGCGACG GCAAGCTGGGCTTCGCTGACTTCGAGGACATGATCGCCAAGGCCCCTGACTTCCTCAGCA CTTTCCACATCCGGATCTGAGGACATTGCTGAGGTTGCAGGGGCCCAGAAGCTGACCGTC CAGCTGTGCCGCCTCCACCAGTATGACCTTCAAGCTCCCCAGGAGAGGAGCGGTGGTCTC TGGGGTTGACACCCACCAACATTTCCTCGGCCCTTTCAGCAAAAAATCCTCAACCAGGGC AGGGGGTGCTGTGTGAAGCAGGGCCCTTCCCAGTGCCCCCGTGGTCCAGCCACAGGACCC AAGGCCCGTCCACAGGCCCTGCCACGGTCCCCCGACCTTCCTCACACCCTGGTCCCCTCC CGATCAGAAACAGCCCCACTGAGAGGAGAAGGCAGAACACCTACCAGGCCAGGGCTATTG ACGCGTCCGAGCGCTGGGCAGGCACCCCGGCTGCCCAGGGAAAAGTGAAGGGGAAAAAAT GGAGAGGACAAGACTTGAAAGAGCTATGCAATCTTTCTCCAAAGCCCACAGCCGGGCTGC GCCCCAGCCCCGCCTGCCTCTTCCCCCGCCCCTTCCCAATGTGAATGGTCAGTCCAAGGG CTCTGTCCCTGTCCCCGTCCCTGTCCAGGTCCCAAGCACCACCCCATCCGCCTCCCCAAT GGCGTGGGATCCTCACTGGTGTGTGCTGTCCACCGATTTGTGAATTCCTGGTAGTAAAAC ACTTTCACATCC |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 36 entry(ies) | More info |
Aligned organism(s): 36 entry(ies) | Help | Less info |
140-255, gnl|bosTau2|chr21 (1156084-1155969) | |
140-255, gnl|canFam2|chrUn (52779049-52779215) | |
140-255, gnl|danRer3|chrNA (25063165-25063300) | |
140-255, gnl|dasNov1|scaffold_19081 (49670-49835) | |
140-255, gnl|echTel1|scaffold_289118 (412-518) | |
140-255, gnl|fr1|chrUn (157727352-157727221) | |
140-255, gnl|galGal2|chr10 (4595631-4595493) | |
140-255, gnl|hg17|chr15 (76190544-76190711) | |
140-255, gnl|Hg17|chr15 (76190676-76190561) | |
140-255, gnl|mm7|chr9 (54579085-54579250) | |
140-255, gnl|Mm7|chr9 (54579216-54579101) | |
140-255, gnl|monDom2|scaffold_41 (16523621-16523787) | |
140-255, gnl|oryCun1|scaffold_195457 (9274-9441) | |
140-255, gnl|panTro1|chr16 (76844496-76844663) | |
140-255, gnl|rheMac2|chr7 (57146320-57146487) | |
140-255, gnl|rn3|chr8 (58118037-58118201) | |
140-255, gnl|tetNig1|chr13 (7306894-7306774) | |
140-255, gnl|xenTro1|scaffold_62 (1551941-1552098) | |
402-598, gnl|bosTau2|chr21 (1149610-1149414) | |
402-598, gnl|canFam2|chrUn (52775450-52775659) | |
402-598, gnl|danRer3|chr25 (20724101-20723891) | |
402-598, gnl|dasNov1|scaffold_19081 (44914-45130) | |
402-598, gnl|fr1|chrUn (157728427-157728215) | |
402-598, gnl|galGal2|chr10 (4605126-4604923) | |
402-598, gnl|hg17|chr15 (76185124-76185339) | |
402-598, gnl|Hg17|chr15 (76185332-76185136) | |
402-598, gnl|loxAfr1|scaffold_61875 (9629-9844) | |
402-598, gnl|mm7|chr9 (54575198-54575420) | |
402-598, gnl|Mm7|chr9 (54575406-54575210) | |
402-598, gnl|monDom2|scaffold_41 (16516721-16516925) | |
402-598, gnl|oryCun1|scaffold_195457 (5495-5704) | |
402-598, gnl|panTro1|chr16 (76838856-76839071) | |
402-598, gnl|rheMac2|chr7 (57140943-57141158) | |
402-598, gnl|rn3|chr8 (58114036-58114258) | |
402-598, gnl|tetNig1|chr13 (7307804-7307600) | |
402-598, gnl|xenTro1|scaffold_62 (1548043-1548247) |
Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
140-255, gnl|bosTau2|chr21 (1156084-1155969) | |
140-255, gnl|canFam2|chrUn (52779049-52779215) | |
140-255, gnl|danRer3|chrNA (25063165-25063300) | |
140-255, gnl|dasNov1|scaffold_19081 (49670-49835) | |
140-255, gnl|echTel1|scaffold_289118 (412-518) | |
140-255, gnl|fr1|chrUn (157727352-157727221) | |
140-255, gnl|galGal2|chr10 (4595631-4595493) | |
140-255, gnl|hg17|chr15 (76190544-76190711) | |
140-255, gnl|Hg17|chr15 (76190676-76190561) | |
140-255, gnl|mm7|chr9 (54579085-54579250) | |
140-255, gnl|Mm7|chr9 (54579216-54579101) | |
140-255, gnl|monDom2|scaffold_41 (16523621-16523787) | |
140-255, gnl|oryCun1|scaffold_195457 (9274-9441) | |
140-255, gnl|panTro1|chr16 (76844496-76844663) | |
140-255, gnl|rheMac2|chr7 (57146320-57146487) | |
140-255, gnl|rn3|chr8 (58118037-58118201) | |
140-255, gnl|tetNig1|chr13 (7306894-7306774) | |
140-255, gnl|xenTro1|scaffold_62 (1551941-1552098) | |
402-598, gnl|bosTau2|chr21 (1149610-1149414) | |
402-598, gnl|canFam2|chrUn (52775450-52775659) | |
402-598, gnl|danRer3|chr25 (20724101-20723891) | |
402-598, gnl|dasNov1|scaffold_19081 (44914-45130) | |
402-598, gnl|fr1|chrUn (157728427-157728215) | |
402-598, gnl|galGal2|chr10 (4605126-4604923) | |
402-598, gnl|hg17|chr15 (76185124-76185339) | |
402-598, gnl|Hg17|chr15 (76185332-76185136) | |
402-598, gnl|loxAfr1|scaffold_61875 (9629-9844) | |
402-598, gnl|mm7|chr9 (54575198-54575420) | |
402-598, gnl|Mm7|chr9 (54575406-54575210) | |
402-598, gnl|monDom2|scaffold_41 (16516721-16516925) | |
402-598, gnl|oryCun1|scaffold_195457 (5495-5704) | |
402-598, gnl|panTro1|chr16 (76838856-76839071) | |
402-598, gnl|rheMac2|chr7 (57140943-57141158) | |
402-598, gnl|rn3|chr8 (58114036-58114258) | |
402-598, gnl|tetNig1|chr13 (7307804-7307600) | |
402-598, gnl|xenTro1|scaffold_62 (1548043-1548247) |
Expressed library(ies): 9 entry(ies) | More info |
Expressed library(ies): 9 entry(ies) | Help | Less info |
fbs (0.350693) | |
ecc (0.23007) | |
fcc (0.197785) | |
duo (0.172801) | |
cag (0.151194) | |
hyp (0.142837) | |
hlv (0.139256) | |
eru (0.120048) | |
ebs (0.118301) |
Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fbs (0.350693) | |
ecc (0.23007) | |
fcc (0.197785) | |
duo (0.172801) | |
cag (0.151194) | |
hyp (0.142837) | |
hlv (0.139256) | |
eru (0.120048) | |
ebs (0.118301) |