Ss1.1-Pig4-TMW8051G20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCACCCAGCGCCCCTTGGGGATGCGTCCCTTCTCTCACAGCACCGTGCTGGAGTTCT GACCTTGACGCCCAGTTGGCCGACCTGGGTGAACCTTGCCTCCTTCCAGTGTTGACCGAG TCTGACAGAGCCACGCTGCCTGTGATAGCCACTGTTTTTGACAAACTCAACCAGGAGTAT AAAAAGTACCTGGACGCTGAGCAGAGTTACACGATGGCCATGGAAGCCGGGCAGAGCCGC AGCAGCCCGCTCCTCAGGAGGCCGGTGCGGACCCAGGCGGTGGTGGACCAGTCTGACATG TACACCCACGTCCTGTCAGCGTTCACGGAGAAGAAGGAGACGCCTCATAAGTTTGTGGTA GCTGTGCTCATGGAGTACATCCGCTCTCTGAACCAGTTTCAGATCACAGTGCAGCATTAC CTACACGAGCTTGTCATCAAGACGCTGGTCCAGCACAACCTCTTCTACACGCTGCACCAG TTCCTGCAGTACCACGTCCTCAGCGACTCGAAGCCTCTGGCTTGCCTGCTGTTGTCCCTG GAGAGCTTTTACCCCCCTGCTCACCAGCTGTCCCTGGATATGCTGAAGCGCCTCTCCACA GCAAACGATGAAATAGTAGAAGTTCTCCTTTCCAAACACCAAGTGTTAGCTGCCTTAAGG TTTATCCGGGGCATCGGTGGCCATGACAACATTTCTGCCCGCAAATTTTTAGATGCCGCA AAGCAGACTGAAACGTCTGCGAGCTGCAAAGGGTTCATTCTCTTGTTTTCCTCCGTTCTT GGCTAACAGATGACATCTGTATTTTCCTTGACAGGAGAACACTGTGAAGAACATGTTGCA TTTTTCAAACAAGTTTTTGGAGACCAAGCTCTGATGAGGCCTGCGACGTTCTGAGGTCAT TTGCTAGTTGTTTTATATATATATATATAAAATGTGTACAAAGTTAATTTATTGCATTAA TAAAGCTCTTTAAACTACAAAATGTTGTAATAAAGTATATCTACGACACCCTCGAATGTT ACTAAAAATACGGTGTAGAACTGGTGATGGCTTACTCCTAAAAAAGGAGAGACATTGCAT TGATTGGCCTTTAGAAAGTGTCAGTGAGCAGACGGCGGCCTTCCTCACGTCCCTTCCACT TGCCCGAGAACCAGGCCCCGCTGATGGAGAACCGGCAACCGCTCCAGTGCCCTGGGGCTG CCTCCGGGTTCAGTAATACTGCTTCACAAGTCAGAGTGTGCGTTCCTGAGTTTAAAAGCG CCGTGGCCGAAGCTGCTGCTGTTAAAGAGCCGGATGGCTGCTCACAGCCAGGGTTCAGCT GAGCCTTGACAACACAGCTACTGTCCAGTGGTAAATGGACCAACCCGCAGACAAGTCTCC AAAGCCTGGGAGGGGCTAGAAATTGAGGAGCTGTTCTCGCTCTGTACCTTTGTAGCGCTC TTGAGTGGCCAGACTTTTGGCTTTATTTATCGATGGTCCTATGTAACTGAGTAAGACAGG GAGGAATATTAATCCATGAGTGGCTCCCAGCAAGACTATTGCTAAATACATCCTGAAGTA AAATATCTGGAATATTTGAGATTTGGCAAAGGCCAACACCACAATGCCTCCAAATTTGGT TAGTGTGATTCCACTGAACACGGAGCTGCCCATGTGGGCGAGTGCCTCCTCGGCCCGGTC CACACGGCTGCCCTTTGTGCTCAGCGTGAACGCCCTGGTTATGTGGCTGCAGAACTCCAC GGAGATGCCGCAGCTCATCACCAAGTTGACCAAAGATACCGCGTTGAGACTGATGCCCCA CAGCCACATGACGCCAAACATGTTGACCAAGATCATGGCGATGGTGACGCACATGATCAC TGTGGCCCACAGCTCACAGCCCATGAGAACCACCGTCACCAGAAAGATGGCTCCCAGGGA CACGCCGAGGTTAAAGATGGTGTCGTCGATCACGGTCAGGTACTGTTCGTAGAAGACGTA GAACACACTGTAGGGGAACACACGGTAGCTACTTGCTTCCAGGCCCATGGTTCTGGTGAT GTTGCTAGCGATGAGGCGGGCCTTCTGCATGGCATCGATGAAGTCAGCAGAGGCCTGCAG CACTGTGTGGTAGGTCATGAAGTAGGTGGCTCCGACCCCTGAGCCATTGCCCAGGATGTT AACGGCTGAGCTGTAAGCGGCGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCACCCAGCGCCCCTTGGGGATGCGTCCCTTCTCTCACAGCACCGTGCTGGAGTTCT GACCTTGACGCCCAGTTGGCCGACCTGGGTGAACCTTGCCTCCTTCCAGTGTTGACCGAG TCTGACAGAGCCACGCTGCCTGTGATAGCCACTGTTTTTGACAAACTCAACCAGGAGTAT AAAAAGTACCTGGACGCTGAGCAGAGTTACACGATGGCCATGGAAGCCGGGCAGAGCCGC AGCAGCCCGCTCCTCAGGAGGCCGGTGCGGACCCAGGCGGTGGTGGACCAGTCTGACATG TACACCCACGTCCTGTCAGCGTTCACGGAGAAGAAGGAGACGCCTCATAAGTTTGTGGTA GCTGTGCTCATGGAGTACATCCGCTCTCTGAACCAGTTTCAGATCACAGTGCAGCATTAC CTACACGAGCTTGTCATCAAGACGCTGGTCCAGCACAACCTCTTCTACACGCTGCACCAG TTCCTGCAGTACCACGTCCTCAGCGACTCGAAGCCTCTGGCTTGCCTGCTGTTGTCCCTG GAGAGCTTTTACCCCCCTGCTCACCAGCTGTCCCTGGATATGCTGAAGCGCCTCTCCACA GCAAACGATGAAATAGTAGAAGTTCTCCTTTCCAAACACCAAGTGTTAGCTGCCTTAAGG TTTATCCGGGGCATCGGTGGCCATGACAACATTTCTGCCCGCAAATTTTTAGATGCCGCA AAGCAGACTGAAACGTCTGCGAGCTGCAAAGGGTTCATTCTCTTGTTTTCCTCCGTTCTT GGCTAACAGATGACATCTGTATTTTCCTTGACAGGAGAACACTGTGAAGAACATGTTGCA TTTTTCAAACAAGTTTTTGGAGACCAAGCTCTGATGAGGCCTGCGACGTTCTGAGGTCAT TTGCTAGTTGTTTTATATATATATATATAAAATGTGTACAAAGTTAATTTATTGCATTAA TAAAGCTCTTTAAACTACAAAATGTTGTAATAAAGTATATCTACGACACCCTCGAATGTT ACTAAAAATACGGTGTAGAACTGGTGATGGCTTACTCCTAAAAAAGGAGAGACATTGCAT TGATTGGCCTTTAGAAAGTGTCAGTGAGCAGACGGCGGCCTTCCTCACGTCCCTTCCACT TGCCCGAGAACCAGGCCCCGCTGATGGAGAACCGGCAACCGCTCCAGTGCCCTGGGGCTG CCTCCGGGTTCAGTAATACTGCTTCACAAGTCAGAGTGTGCGTTCCTGAGTTTAAAAGCG CCGTGGCCGAAGCTGCTGCTGTTAAAGAGCCGGATGGCTGCTCACAGCCAGGGTTCAGCT GAGCCTTGACAACACAGCTACTGTCCAGTGGTAAATGGACCAACCCGCAGACAAGTCTCC AAAGCCTGGGAGGGGCTAGAAATTGAGGAGCTGTTCTCGCTCTGTACCTTTGTAGCGCTC TTGAGTGGCCAGACTTTTGGCTTTATTTATCGATGGTCCTATGTAACTGAGTAAGACAGG GAGGAATATTAATCCATGAGTGGCTCCCAGCAAGACTATTGCTAAATACATCCTGAAGTA AAATATCTGGAATATTTGAGATTTGGCAAAGGCCAACACCACAATGCCTCCAAATTTGGT TAGTGTGATTCCACTGAACACGGAGCTGCCCATGTGGGCGAGTGCCTCCTCGGCCCGGTC CACACGGCTGCCCTTTGTGCTCAGCGTGAACGCCCTGGTTATGTGGCTGCAGAACTCCAC GGAGATGCCGCAGCTCATCACCAAGTTGACCAAAGATACCGCGTTGAGACTGATGCCCCA CAGCCACATGACGCCAAACATGTTGACCAAGATCATGGCGATGGTGACGCACATGATCAC TGTGGCCCACAGCTCACAGCCCATGAGAACCACCGTCACCAGAAAGATGGCTCCCAGGGA CACGCCGAGGTTAAAGATGGTGTCGTCGATCACGGTCAGGTACTGTTCGTAGAAGACGTA GAACACACTGTAGGGGAACACACGGTAGCTACTTGCTTCCAGGCCCATGGTTCTGGTGAT GTTGCTAGCGATGAGGCGGGCCTTCTGCATGGCATCGATGAAGTCAGCAGAGGCCTGCAG CACTGTGTGGTAGGTCATGAAGTAGGTGGCTCCGACCCCTGAGCCATTGCCCAGGATGTT AACGGCTGAGCTGTAAGCGGCGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 75-217, gnl|bosTau2|chr24 (24592757-24592899) | |
| 75-217, gnl|Hg17|chr18 (19361735-19361864) | |
| 75-217, gnl|Mm7|chr18 (12535549-12535694) | |
| 412-520, gnl|bosTau2|chr24 (24595604-24595712) | |
| 412-520, gnl|canFam2|chr7 (67840880-67840764) | |
| 412-520, gnl|danRer3|chr23 (36268818-36268934) | |
| 412-520, gnl|dasNov1|scaffold_40812 (12826-12710) | |
| 412-520, gnl|fr1|chrUn (249519623-249519735) | |
| 412-520, gnl|galGal2|chr2 (102248244-102248360) | |
| 412-520, gnl|hg17|chr18 (19363988-19364104) | |
| 412-520, gnl|Hg17|chr18 (19363987-19364095) | |
| 412-520, gnl|loxAfr1|scaffold_42907 (34188-34304) | |
| 412-520, gnl|mm7|chr18 (12538756-12538872) | |
| 412-520, gnl|Mm7|chr18 (12538755-12538863) | |
| 412-520, gnl|monDom2|scaffold_21 (38735403-38735519) | |
| 412-520, gnl|panTro1|chr17 (15280176-15280292) | |
| 412-520, gnl|rheMac2|chr18 (16543956-16544072) | |
| 412-520, gnl|rn3|chr18 (3724553-3724669) | |
| 412-520, gnl|tetNig1|chrUn_random (53108780-53108892) | |
| 412-520, gnl|xenTro1|scaffold_63 (1040617-1040501) | |
| 587-732, gnl|bosTau2|chr24 (24596092-24596237) | |
| 587-732, gnl|Hg17|chr18 (19364347-19364492) | |
| 587-732, gnl|Mm7|chr18 (12539096-12539241) | |
| 733-1483, gnl|bosTau2|chr24 (24596970-24597734) | |
| 733-1483, gnl|Hg17|chr18 (19365513-19366251) | |
| 1756-1996, gnl|bosTau2|chr24 (24600106-24600346) | |
| 1756-1996, gnl|canFam2|chr7 (67836689-67836411) | |
| 1756-1996, gnl|danRer3|chr23 (54228504-54228242) | |
| 1756-1996, gnl|dasNov1|scaffold_40812 (8034-7756) | |
| 1756-1996, gnl|echTel1|scaffold_320515 (11502-11793) | |
| 1756-1996, gnl|fr1|chrUn (118119492-118119245) | |
| 1756-1996, gnl|galGal2|chr2 (102252633-102252910) | |
| 1756-1996, gnl|hg17|chr18 (19369418-19369696) | |
| 1756-1996, gnl|Hg17|chr18 (19369431-19369670) | |
| 1756-1996, gnl|loxAfr1|scaffold_42907 (39439-39721) | |
| 1756-1996, gnl|mm7|chr18 (12543988-12544273) | |
| 1756-1996, gnl|Mm7|chr18 (12544001-12544244) | |
| 1756-1996, gnl|monDom2|scaffold_21 (38742468-38742734) | |
| 1756-1996, gnl|oryCun1|scaffold_103508 (3668-3946) | |
| 1756-1996, gnl|panTro1|chr17 (15285682-15285960) | |
| 1756-1996, gnl|rheMac2|chr18 (16549334-16549612) | |
| 1756-1996, gnl|rn3|chr18 (3729476-3729750) | |
| 1756-1996, gnl|tetNig1|chr15_random (1451333-1451580) | |
| 1756-1996, gnl|xenTro1|scaffold_1411 (33773-33503) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-217, gnl|bosTau2|chr24 (24592757-24592899) | |
| 75-217, gnl|Hg17|chr18 (19361735-19361864) | |
| 75-217, gnl|Mm7|chr18 (12535549-12535694) | |
| 412-520, gnl|bosTau2|chr24 (24595604-24595712) | |
| 412-520, gnl|canFam2|chr7 (67840880-67840764) | |
| 412-520, gnl|danRer3|chr23 (36268818-36268934) | |
| 412-520, gnl|dasNov1|scaffold_40812 (12826-12710) | |
| 412-520, gnl|fr1|chrUn (249519623-249519735) | |
| 412-520, gnl|galGal2|chr2 (102248244-102248360) | |
| 412-520, gnl|hg17|chr18 (19363988-19364104) | |
| 412-520, gnl|Hg17|chr18 (19363987-19364095) | |
| 412-520, gnl|loxAfr1|scaffold_42907 (34188-34304) | |
| 412-520, gnl|mm7|chr18 (12538756-12538872) | |
| 412-520, gnl|Mm7|chr18 (12538755-12538863) | |
| 412-520, gnl|monDom2|scaffold_21 (38735403-38735519) | |
| 412-520, gnl|panTro1|chr17 (15280176-15280292) | |
| 412-520, gnl|rheMac2|chr18 (16543956-16544072) | |
| 412-520, gnl|rn3|chr18 (3724553-3724669) | |
| 412-520, gnl|tetNig1|chrUn_random (53108780-53108892) | |
| 412-520, gnl|xenTro1|scaffold_63 (1040617-1040501) | |
| 587-732, gnl|bosTau2|chr24 (24596092-24596237) | |
| 587-732, gnl|Hg17|chr18 (19364347-19364492) | |
| 587-732, gnl|Mm7|chr18 (12539096-12539241) | |
| 733-1483, gnl|bosTau2|chr24 (24596970-24597734) | |
| 733-1483, gnl|Hg17|chr18 (19365513-19366251) | |
| 1756-1996, gnl|bosTau2|chr24 (24600106-24600346) | |
| 1756-1996, gnl|canFam2|chr7 (67836689-67836411) | |
| 1756-1996, gnl|danRer3|chr23 (54228504-54228242) | |
| 1756-1996, gnl|dasNov1|scaffold_40812 (8034-7756) | |
| 1756-1996, gnl|echTel1|scaffold_320515 (11502-11793) | |
| 1756-1996, gnl|fr1|chrUn (118119492-118119245) | |
| 1756-1996, gnl|galGal2|chr2 (102252633-102252910) | |
| 1756-1996, gnl|hg17|chr18 (19369418-19369696) | |
| 1756-1996, gnl|Hg17|chr18 (19369431-19369670) | |
| 1756-1996, gnl|loxAfr1|scaffold_42907 (39439-39721) | |
| 1756-1996, gnl|mm7|chr18 (12543988-12544273) | |
| 1756-1996, gnl|Mm7|chr18 (12544001-12544244) | |
| 1756-1996, gnl|monDom2|scaffold_21 (38742468-38742734) | |
| 1756-1996, gnl|oryCun1|scaffold_103508 (3668-3946) | |
| 1756-1996, gnl|panTro1|chr17 (15285682-15285960) | |
| 1756-1996, gnl|rheMac2|chr18 (16549334-16549612) | |
| 1756-1996, gnl|rn3|chr18 (3729476-3729750) | |
| 1756-1996, gnl|tetNig1|chr15_random (1451333-1451580) | |
| 1756-1996, gnl|xenTro1|scaffold_1411 (33773-33503) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| spc (0.453463) | |
| che (0.408942) | |
| cov (0.396458) | |
| fbs (0.350693) | |
| liv (0.292569) | |
| pla (0.267344) | |
| sug (0.254582) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mga (0.160205) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ste (0.135208) | |
| thg (0.126791) | |
| ecc (0.115035) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.453463) | |
| che (0.408942) | |
| cov (0.396458) | |
| fbs (0.350693) | |
| liv (0.292569) | |
| pla (0.267344) | |
| sug (0.254582) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mga (0.160205) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ste (0.135208) | |
| thg (0.126791) | |
| ecc (0.115035) |