Non-Coding RNA Search

Ss1.1-Pig4-TMW8051G21.3

Sequence:


               
               ATTTTGTTTACAAATGCTTGTATTTTGAGATGCACTTTTAAGCTTGGAGGACATTGTGGG
GGGTCCTGGGCCTCAGGTGCCAGTTGGCCTGGCCATTGGTTCAGCATATGCCCAGGATTT
AGGTAACCTCAGGGCCTGCTGGTGGGACCGAGGTGAGGTGTCAAGTATTTTATTGAGCAT
TTCAGGGATCAGAGCATCTTGTACAAACCGGCCCAGGGCCCCCTTGTTGTGGTCACCAAC
AGTGGAGCCTGCTGGTGCCTCTCAGCTCCTCAGCTGCCCTGTGGGGGGTGGAGGAACGGG
CTGCACTTGGGTGGTGTCTCCCTGTCCGTGGGGTGTGGGCCGCTGCCCTCACTACCAGCA
ACCCCCCCACCGCACACTTCCTTAAAAACCACTCTGATGTCACAATTGAGTGTCCGTTCT
GTCTCAGATACCCATGTTTGCCACTCCAACACGATTGTGTGGTTCTGTAAACTCAGCCCA
GCCAGACCTTGGCTTTTTCAGACGTGCACATAAACCCAGGTGACTTGGCTGAGTGTGTTG
CTTGCCTAGTGGCTGCAAGGGCGCAGGAGTGTCTTCCTTGTTGTCTGGGCTGCTGTGCCC
AGGGCAGCACAGAAGTTATTTTTATTAAACTTTTATTCAACTTTGTCAGGTGGTGGAATT
GAATTGTAAGCGTGTTGATTAATGGCTGTGCTCTGTCTTGTAGGGCAAATCCCACTGAAG
AAGCTTCCGTGCCCCACAGCCAGCAGTGCTGGCCAAGGAATGCCTGTCCACCAAGGCTCC
CACTGGGTGGGATAGGAAAGAGGGGTCCCCCTCAAACAGGAAGTCTTTTTACGAAGCATC
CAATCTCTTCCTGTCTTCTAGTACCCTTGGTTGGGATACGTGTTATATGTCAGTGGTCCA
CGAGGCCACCTATCTTGACCCTGGAGTCCCTTGTCAGTGGCCAGCTGGAGGACTGGCAGG
ATCCACTGGCTAGCCAAGGGTTCTTGGCAGGGGGCTGTGGACTTTTCTCCCTGTTCCGTA
AGTTGCTGACCTTCGAGAATAGGCCTGATGAGCAGACTCCAGCCACACTTGTAGGGTAGG
GCCTGGGAGGTTGTTCCTTTTGGCCGACTCCTTCCGGGTGCCTCGCCCTGCACCCAGCGG
TGTCTGCCTGCAGCCTGTGGCTTCTCCACCACCCCAGGGTCACAGTGGCCCTTCACTCAG
TCTTTTAAGAGTTCTCAGAGCAATAAAGGGTGTCCCGAGCCTTCAGCTCTTCCCAGGTCT
GCGTGCCTGGGGTTCTGATGTGGCGGTGGGCAACGTGAGGGCAGCCAGCACCTGTGAGGT
TGGTGGTGCTGACGTTGGCTCTGCGAGGTCGGCTCAAGGTGGGTCTGGATATTGAGCAGG
CCTGTCAGGGCGTTGTCACCCACACCAGGAGCACGTGGCAGGTGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTTTACAAATGCTTGTATTTTGAGATGCACTTTTAAGCTTGGAGGACATTGTGGG
GGGTCCTGGGCCTCAGGTGCCAGTTGGCCTGGCCATTGGTTCAGCATATGCCCAGGATTT
AGGTAACCTCAGGGCCTGCTGGTGGGACCGAGGTGAGGTGTCAAGTATTTTATTGAGCAT
TTCAGGGATCAGAGCATCTTGTACAAACCGGCCCAGGGCCCCCTTGTTGTGGTCACCAAC
AGTGGAGCCTGCTGGTGCCTCTCAGCTCCTCAGCTGCCCTGTGGGGGGTGGAGGAACGGG
CTGCACTTGGGTGGTGTCTCCCTGTCCGTGGGGTGTGGGCCGCTGCCCTCACTACCAGCA
ACCCCCCCACCGCACACTTCCTTAAAAACCACTCTGATGTCACAATTGAGTGTCCGTTCT
GTCTCAGATACCCATGTTTGCCACTCCAACACGATTGTGTGGTTCTGTAAACTCAGCCCA
GCCAGACCTTGGCTTTTTCAGACGTGCACATAAACCCAGGTGACTTGGCTGAGTGTGTTG
CTTGCCTAGTGGCTGCAAGGGCGCAGGAGTGTCTTCCTTGTTGTCTGGGCTGCTGTGCCC
AGGGCAGCACAGAAGTTATTTTTATTAAACTTTTATTCAACTTTGTCAGGTGGTGGAATT
GAATTGTAAGCGTGTTGATTAATGGCTGTGCTCTGTCTTGTAGGGCAAATCCCACTGAAG
AAGCTTCCGTGCCCCACAGCCAGCAGTGCTGGCCAAGGAATGCCTGTCCACCAAGGCTCC
CACTGGGTGGGATAGGAAAGAGGGGTCCCCCTCAAACAGGAAGTCTTTTTACGAAGCATC
CAATCTCTTCCTGTCTTCTAGTACCCTTGGTTGGGATACGTGTTATATGTCAGTGGTCCA
CGAGGCCACCTATCTTGACCCTGGAGTCCCTTGTCAGTGGCCAGCTGGAGGACTGGCAGG
ATCCACTGGCTAGCCAAGGGTTCTTGGCAGGGGGCTGTGGACTTTTCTCCCTGTTCCGTA
AGTTGCTGACCTTCGAGAATAGGCCTGATGAGCAGACTCCAGCCACACTTGTAGGGTAGG
GCCTGGGAGGTTGTTCCTTTTGGCCGACTCCTTCCGGGTGCCTCGCCCTGCACCCAGCGG
TGTCTGCCTGCAGCCTGTGGCTTCTCCACCACCCCAGGGTCACAGTGGCCCTTCACTCAG
TCTTTTAAGAGTTCTCAGAGCAATAAAGGGTGTCCCGAGCCTTCAGCTCTTCCCAGGTCT
GCGTGCCTGGGGTTCTGATGTGGCGGTGGGCAACGTGAGGGCAGCCAGCACCTGTGAGGT
TGGTGGTGCTGACGTTGGCTCTGCGAGGTCGGCTCAAGGTGGGTCTGGATATTGAGCAGG
CCTGTCAGGGCGTTGTCACCCACACCAGGAGCACGTGGCAGGTGCAGC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               3-192, gnl|bosTau2|chr25 (5050394-5050589)
               

               
               3-192, gnl|Hg17|chr16 (2203558-2203356)
               

               
               3-192, gnl|Mm7|chr17 (22652553-22652730)
               


               
               1026-1362, gnl|bosTau2|chr10 (66759676-66759353)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-192, gnl|bosTau2|chr25 (5050394-5050589)
               

               
               3-192, gnl|Hg17|chr16 (2203558-2203356)
               

               
               3-192, gnl|Mm7|chr17 (22652553-22652730)
               


               
               1026-1362, gnl|bosTau2|chr10 (66759676-66759353)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               ese (0.126502)

	3-192, gnl\|bosTau2\|chr25 (5050394-5050589)
	3-192, gnl\|Hg17\|chr16 (2203558-2203356)
	3-192, gnl\|Mm7\|chr17 (22652553-22652730)

	1026-1362, gnl\|bosTau2\|chr10 (66759676-66759353)