Non-Coding RNA Search

Ss1.1-Pig4-TMW8051G22.3

Sequence:


               
               CTGGGCCGGCCCTGCTCCGGGTGGGCCCGGGCTTCGACGCGGCGCTGCAGGTCTCGGCCG
CCATCGGCACCAACCTGCGCCGGTTCCGGGCCGTGTTTGGGGAGAGCGGCGGGGGAGGCG
GCAGCGGAGAGGATGAGCAGTTCTTAGGTTTTGGCTCAGATGAAGAAGTCAGAGTACGAA
GTCCCACAAGGTCTCCTTCAGTTAAAACTAGTCCTCGAAAACCTCGCGGGAGGCCTAGAA
GTGGCTCTGACCGAAACTCAGCCCTCCTCTCAGACCCACCTGTGTTCTCCCCTCTAAATA
AATCAGAGACCAGACCTGGAGATAAGATCAAGAAGAAAGATTCTAAAAGTATAGAAAAGA
AGAGAGGAAGACCTCCCACTTTCCCTGGAGTAAAACTCAAAATAACACATGGAAAGGACA
TTACAGAGTTACCAAAGGGAAACAAAGAAGATAGCCTGAAGAAAATGAAACGGACACCTT
CTGCCACGTTTCAGCAAGCCACAAAGATTAAAAAATTAAGAGCAGGTAAACTCTCTCCTC
TCAAGTCAAAATTTAAGACAGGGAAGCTTCAAATAGGAAGGAAGGGGGTACAGATTGTTC
GCCGGAGAGGAAGGCCTCCGTCCACAGAAAGGATAAAGACTCCTGCAGGTCTCCTCATTA
ACTCAGAACTGGAAAAGCCCCAGAAGGTCCGGAAAGACAAGGAAGGAACACCTCCACTCA
CAAAAGAAGATAAGACAGTAGTCAGACAAAGCCCTCGAAGGATTAAGCCGGTTAGGATTA
TTCCTTCTTCTAAAAGGACAGATGCAACAATCGCTAAGCAGCTCCTGCAGAGGGCAAAAA
AGGGGGCTCAGAAGAAAATTGAGAAAGAAGCAGCTCAGCTGCAAGGAAGAAAGGTGAAGA
CACAGGTCAAAAACATCCGGCAGTTCATCATGCCTGTCGTCAGCGCCATCTCCTCGCGGA
TCATTAAAACCCCTCGGCGGTTTATAGAGGATGAAGATTACGACCCTCCAATTAAAATTG
CCCGACTCGAGTCTACACCGAATAGTAGATTCAGCGCCACATCCTGTGGATCTTCTGAAA
AATCAAGCGCAGCTTCTCAGCACTCCTCGCAAATGTCTTCAGACTCCTCCCGATCGAGTA
GCCCCAGTGTTGATACCTCCACAGATTCTCAGGCCTCTGAGGAGATTCAGGTACTTCCTG
AAGAGCGGAGCGATACCCCCGAAGTTCATACTCCACTGCCTATTTCCCAGTCCCCAGAAA
ACGAGAGTACTGACAGGCGAAGCCGAAAGTATTCAGTGTCAGAGAGAAGTTTTGGATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCCGGCCCTGCTCCGGGTGGGCCCGGGCTTCGACGCGGCGCTGCAGGTCTCGGCCG
CCATCGGCACCAACCTGCGCCGGTTCCGGGCCGTGTTTGGGGAGAGCGGCGGGGGAGGCG
GCAGCGGAGAGGATGAGCAGTTCTTAGGTTTTGGCTCAGATGAAGAAGTCAGAGTACGAA
GTCCCACAAGGTCTCCTTCAGTTAAAACTAGTCCTCGAAAACCTCGCGGGAGGCCTAGAA
GTGGCTCTGACCGAAACTCAGCCCTCCTCTCAGACCCACCTGTGTTCTCCCCTCTAAATA
AATCAGAGACCAGACCTGGAGATAAGATCAAGAAGAAAGATTCTAAAAGTATAGAAAAGA
AGAGAGGAAGACCTCCCACTTTCCCTGGAGTAAAACTCAAAATAACACATGGAAAGGACA
TTACAGAGTTACCAAAGGGAAACAAAGAAGATAGCCTGAAGAAAATGAAACGGACACCTT
CTGCCACGTTTCAGCAAGCCACAAAGATTAAAAAATTAAGAGCAGGTAAACTCTCTCCTC
TCAAGTCAAAATTTAAGACAGGGAAGCTTCAAATAGGAAGGAAGGGGGTACAGATTGTTC
GCCGGAGAGGAAGGCCTCCGTCCACAGAAAGGATAAAGACTCCTGCAGGTCTCCTCATTA
ACTCAGAACTGGAAAAGCCCCAGAAGGTCCGGAAAGACAAGGAAGGAACACCTCCACTCA
CAAAAGAAGATAAGACAGTAGTCAGACAAAGCCCTCGAAGGATTAAGCCGGTTAGGATTA
TTCCTTCTTCTAAAAGGACAGATGCAACAATCGCTAAGCAGCTCCTGCAGAGGGCAAAAA
AGGGGGCTCAGAAGAAAATTGAGAAAGAAGCAGCTCAGCTGCAAGGAAGAAAGGTGAAGA
CACAGGTCAAAAACATCCGGCAGTTCATCATGCCTGTCGTCAGCGCCATCTCCTCGCGGA
TCATTAAAACCCCTCGGCGGTTTATAGAGGATGAAGATTACGACCCTCCAATTAAAATTG
CCCGACTCGAGTCTACACCGAATAGTAGATTCAGCGCCACATCCTGTGGATCTTCTGAAA
AATCAAGCGCAGCTTCTCAGCACTCCTCGCAAATGTCTTCAGACTCCTCCCGATCGAGTA
GCCCCAGTGTTGATACCTCCACAGATTCTCAGGCCTCTGAGGAGATTCAGGTACTTCCTG
AAGAGCGGAGCGATACCCCCGAAGTTCATACTCCACTGCCTATTTCCCAGTCCCCAGAAA
ACGAGAGTACTGACAGGCGAAGCCGAAAGTATTCAGTGTCAGAGAGAAGTTTTGGATCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4007383|gb|AAC95283.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4007383|gb|AAC95283.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               238-397, - strand, RNAz p=0.993054
               

               
               598-837, - strand, RNAz p=0.996519
               

               
               1158-1277, - strand, RNAz p=0.544214

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-397, - strand, RNAz p=0.993054
               

               
               598-837, - strand, RNAz p=0.996519
               

               
               1158-1277, - strand, RNAz p=0.544214

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               199-1318, gnl|bosTau2|chr15 (15067773-15066654)
               

               
               199-1318, gnl|Hg17|chr11 (117847584-117848703)
               

               
               199-1318, gnl|Mm7|chr9 (44784402-44783283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-1318, gnl|bosTau2|chr15 (15067773-15066654)
               

               
               199-1318, gnl|Hg17|chr11 (117847584-117848703)
               

               
               199-1318, gnl|Mm7|chr9 (44784402-44783283)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	238-397, - strand, RNAz p=0.993054
	598-837, - strand, RNAz p=0.996519
	1158-1277, - strand, RNAz p=0.544214

	199-1318, gnl\|bosTau2\|chr15 (15067773-15066654)
	199-1318, gnl\|Hg17\|chr11 (117847584-117848703)
	199-1318, gnl\|Mm7\|chr9 (44784402-44783283)