Non-Coding RNA Search

Ss1.1-Pig4-TMW8051H03.5

Sequence:


               
               GTGAAGCCCCAGCGAGCGGCAGCGGCGGGGCTGTGAGGAGCAGCCAGGGGGAGGCGGCGG
CGGCGAGTCGGTGAGCAGCTGGGAAGAGCGGAGCCGGGGCGGAGCACCTGCAGGCACGGG
CGGCGGCTTCACCATGGCGATTCGCAAGAAGAGCACCAAGAGCCCCCCGGTCCTGAGCCA
CGAATTCGTCCTGCAGAATCACGCGGACATCGTCTCCTGTATGGCGATGGTTTTCCTGCT
GGGGCTCATGTTCGAGATAACAGCGAAAGCCTCTATAATTTTTGTTACTCTTCAGTACAA
TGTTACCCTCCCTGCAACAGAAGAACAAGCTACTGAATCAGCGTTCCTTTATTACTATGG
TATCAAAGATTTGGCTACCGTTTTCTTCTACATGCTAGTGGCGATAATTATTCATGCCAT
AATTCAAGAGTATGTGTTGGATAAAATTAACAGGCGAATGCACTTCTCCAAAACGAAACA
CAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCATTCTACCTGTTTTCTTGTATTTGGGG
CACATTCATTCTAATATCTGAAAACTACATTTCAGACCCAACTATCCTGTGGAGGGCCTA
TCCCCATAATCTGATGACATTTCAAATGAAGTTTTTCTACATATCACAGTTGGCATACTG
GTTTCATGCTTTTCCTGAACTCTACTTCCAGAAAACCAAAAAAGAAGATATTCCTCGTCA
GCTCGTCTACATTGGCCTTTACCTCTTTCACATTGCCGGAGCTTATCTTTTGAACTTGAA
TCATCTAGGACTTGTTCTTTTGGTGCTGCACTATTTTGTTGAGTTTCTTTTCCATATTTC
TCGCCTGTTTTATTTTAGTGATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCT
GTTTGTTTTGGGAAGACTTCTGACTTTAATTCTTTCGGTACTCACTGTTGGCTTTGGCCT
TGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTGGCTGT
TAGAATTGCCGTTCTGGCATCCATTTGCATTACCCAGGCGTTCATGATGTGGAAGTTCAT
TAATTTTCAGCTTCGGAGGTGGAGAGAACATTCTACTTTTCAGGCACCAACTGTGAAGAA
GAAACCAATAGTGACGAAAGGCAGATCTTCTAGAAAAGGAACAGAAAATGGTGTGAATGG
AACAGTAACTTCAAATGGAGCGGACTCTCCCCGTAATAGAAAAGAGAAATCTTCATAATG
AATTATAATCTTAATTGATTAATGTCCCCAAAGAAATCTGCTTTTTACTATATCTTTCAG
CACTAGAGATTTTTTTTCTGTTCTTGAAAATACAGTTTGTGCTCTTTGATTCTTGCTATT
GTACGGTTTCATGCATTTTTTTAAAGGGCATTTGAGGGGAGGATGATGACTATGAGTGAA
AAAAATAGTTTAGCTTAGACTAAGCTACCTGCCTTCAAAGTAGTTTAGGGACCACCATAT
TTTATTTGTCTTTTTATCCTTGAGCATTTTTCTAATGATTTGGAGAGAGAACTATTTACA
AAAATTCTACATATCAGTGACAACAATTTCTTGCTCTCACCAATTTTTTATATTAGCAAG
ATGGCCTATTCCAGCAAGGTCATATTTTTTAAGTTATCTTTCAGGGTAAAATGAAATACT
ACAAAGTTGGATGTCAAACTTTAATATGTTTTCAGTGTTCTCTAATTTTTAGGAATTTTT
GTAGCCTTTACACATGGGAAAAAAGATTTGTAAATTCACCAGAATAATTGTGTGCTTTAT
TTTATAGTGGTTGTTAATGTTACATCCCCATTTTTTAAGGGAAAAAAAACATACCTTTGG
TTACAACATATGGAGATTTATTGCCATATGTATTGAATCAAAGTATCTTATATTAACATA
AAAGTACTTGTGAAATAAAATTTTCTTGTGCATTTTCAACACTTATAAACTGTAAGTCAG
AAAATTAACTATTTACTATAAAGAAAATTTGACCAGAGCCCTTTTTGATACATTTATTAA
TAATGATTCTTAATGGGGCTTGTCATAAGTTTGATATGCACAGCATCTTAGAAAAATACT
GTTTAACCTGAAAACCCTTTTAAAAAGTAATGCCTACTTGATTTATATCTATAAAAAGAT
GTCAGGTAATTATATTTGAAAAACATTTAATGCACTAACTTAAATTGAAAATTCAGGGGG
ATAAATAGTCTTACAAAAGACAGTGCTTTATGTTATAACTATAGCTTTGGTCCCATCTTT
AATTGAGAAACATTTATCTGTATAAAACATATTTTTGGATAAATATATATATATATTTGT
ATCTCTACAGAAAGGCTCTAAAAAACATTTGAGTAAAATATTTGGTTCCCTTTTCTATAA
TTATCCTTTAAAATCTTTATAGCTCTATTTGGGTTTTTGTTGTCTTTACAGGACGTATAT
CACTCCTTTCGATGTTCACATCTTGCTCCCCACTTCTCACTTTGTCACCAGCTAATGTTT
GCGTCATTTTTAGTATAAAAGTTGCAGACCTAGTACGTCTGCCGTTTAATAAGTTGCCAT
ATGCTGCTAGAAAGTTGTGCTTTCTGTTTCCAACTGTTTACCTACTTCCTGGAAAAAGTA
GTAGCTCTCTGTAGCATTATGGAGTTTCAGTGGAACCAAATCTCTGCCATTGAAAACTGG
CATTATATCAAACTATACATTGAGAAATCAATCAGAATAAAAATTTTTACTTTCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGCCCCAGCGAGCGGCAGCGGCGGGGCTGTGAGGAGCAGCCAGGGGGAGGCGGCGG
CGGCGAGTCGGTGAGCAGCTGGGAAGAGCGGAGCCGGGGCGGAGCACCTGCAGGCACGGG
CGGCGGCTTCACCATGGCGATTCGCAAGAAGAGCACCAAGAGCCCCCCGGTCCTGAGCCA
CGAATTCGTCCTGCAGAATCACGCGGACATCGTCTCCTGTATGGCGATGGTTTTCCTGCT
GGGGCTCATGTTCGAGATAACAGCGAAAGCCTCTATAATTTTTGTTACTCTTCAGTACAA
TGTTACCCTCCCTGCAACAGAAGAACAAGCTACTGAATCAGCGTTCCTTTATTACTATGG
TATCAAAGATTTGGCTACCGTTTTCTTCTACATGCTAGTGGCGATAATTATTCATGCCAT
AATTCAAGAGTATGTGTTGGATAAAATTAACAGGCGAATGCACTTCTCCAAAACGAAACA
CAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCATTCTACCTGTTTTCTTGTATTTGGGG
CACATTCATTCTAATATCTGAAAACTACATTTCAGACCCAACTATCCTGTGGAGGGCCTA
TCCCCATAATCTGATGACATTTCAAATGAAGTTTTTCTACATATCACAGTTGGCATACTG
GTTTCATGCTTTTCCTGAACTCTACTTCCAGAAAACCAAAAAAGAAGATATTCCTCGTCA
GCTCGTCTACATTGGCCTTTACCTCTTTCACATTGCCGGAGCTTATCTTTTGAACTTGAA
TCATCTAGGACTTGTTCTTTTGGTGCTGCACTATTTTGTTGAGTTTCTTTTCCATATTTC
TCGCCTGTTTTATTTTAGTGATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCT
GTTTGTTTTGGGAAGACTTCTGACTTTAATTCTTTCGGTACTCACTGTTGGCTTTGGCCT
TGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACTGGAAACTTCAATGTGTTGGCTGT
TAGAATTGCCGTTCTGGCATCCATTTGCATTACCCAGGCGTTCATGATGTGGAAGTTCAT
TAATTTTCAGCTTCGGAGGTGGAGAGAACATTCTACTTTTCAGGCACCAACTGTGAAGAA
GAAACCAATAGTGACGAAAGGCAGATCTTCTAGAAAAGGAACAGAAAATGGTGTGAATGG
AACAGTAACTTCAAATGGAGCGGACTCTCCCCGTAATAGAAAAGAGAAATCTTCATAATG
AATTATAATCTTAATTGATTAATGTCCCCAAAGAAATCTGCTTTTTACTATATCTTTCAG
CACTAGAGATTTTTTTTCTGTTCTTGAAAATACAGTTTGTGCTCTTTGATTCTTGCTATT
GTACGGTTTCATGCATTTTTTTAAAGGGCATTTGAGGGGAGGATGATGACTATGAGTGAA
AAAAATAGTTTAGCTTAGACTAAGCTACCTGCCTTCAAAGTAGTTTAGGGACCACCATAT
TTTATTTGTCTTTTTATCCTTGAGCATTTTTCTAATGATTTGGAGAGAGAACTATTTACA
AAAATTCTACATATCAGTGACAACAATTTCTTGCTCTCACCAATTTTTTATATTAGCAAG
ATGGCCTATTCCAGCAAGGTCATATTTTTTAAGTTATCTTTCAGGGTAAAATGAAATACT
ACAAAGTTGGATGTCAAACTTTAATATGTTTTCAGTGTTCTCTAATTTTTAGGAATTTTT
GTAGCCTTTACACATGGGAAAAAAGATTTGTAAATTCACCAGAATAATTGTGTGCTTTAT
TTTATAGTGGTTGTTAATGTTACATCCCCATTTTTTAAGGGAAAAAAAACATACCTTTGG
TTACAACATATGGAGATTTATTGCCATATGTATTGAATCAAAGTATCTTATATTAACATA
AAAGTACTTGTGAAATAAAATTTTCTTGTGCATTTTCAACACTTATAAACTGTAAGTCAG
AAAATTAACTATTTACTATAAAGAAAATTTGACCAGAGCCCTTTTTGATACATTTATTAA
TAATGATTCTTAATGGGGCTTGTCATAAGTTTGATATGCACAGCATCTTAGAAAAATACT
GTTTAACCTGAAAACCCTTTTAAAAAGTAATGCCTACTTGATTTATATCTATAAAAAGAT
GTCAGGTAATTATATTTGAAAAACATTTAATGCACTAACTTAAATTGAAAATTCAGGGGG
ATAAATAGTCTTACAAAAGACAGTGCTTTATGTTATAACTATAGCTTTGGTCCCATCTTT
AATTGAGAAACATTTATCTGTATAAAACATATTTTTGGATAAATATATATATATATTTGT
ATCTCTACAGAAAGGCTCTAAAAAACATTTGAGTAAAATATTTGGTTCCCTTTTCTATAA
TTATCCTTTAAAATCTTTATAGCTCTATTTGGGTTTTTGTTGTCTTTACAGGACGTATAT
CACTCCTTTCGATGTTCACATCTTGCTCCCCACTTCTCACTTTGTCACCAGCTAATGTTT
GCGTCATTTTTAGTATAAAAGTTGCAGACCTAGTACGTCTGCCGTTTAATAAGTTGCCAT
ATGCTGCTAGAAAGTTGTGCTTTCTGTTTCCAACTGTTTACCTACTTCCTGGAAAAAGTA
GTAGCTCTCTGTAGCATTATGGAGTTTCAGTGGAACCAAATCTCTGCCATTGAAAACTGG
CATTATATCAAACTATACATTGAGAAATCAATCAGAATAAAAATTTTTACTTTCAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               TRAM1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               TRAM1_BOVIN

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1745-2005, gnl|bosTau2|chr6 (4912263-4912523)
               

               
               1745-2005, gnl|Hg17|chr8 (71649235-71648987)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1745-2005, gnl|bosTau2|chr6 (4912263-4912523)
               

               
               1745-2005, gnl|Hg17|chr8 (71649235-71648987)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               lyg (1.59723)
               

               
               amn (0.835422)
               

               
               mga (0.801025)
               

               
               liv (0.731422)
               

               
               lin (0.728014)
               

               
               tes (0.623441)
               

               
               mgm (0.541028)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               cty (0.41632)
               

               
               nmm (0.398406)
               

               
               ova (0.387397)
               

               
               gul (0.355177)
               

               
               cbl (0.344392)
               

               
               mcp (0.341297)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               clu (0.239292)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.59723)
               

               
               amn (0.835422)
               

               
               mga (0.801025)
               

               
               liv (0.731422)
               

               
               lin (0.728014)
               

               
               tes (0.623441)
               

               
               mgm (0.541028)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               cty (0.41632)
               

               
               nmm (0.398406)
               

               
               ova (0.387397)
               

               
               gul (0.355177)
               

               
               cbl (0.344392)
               

               
               mcp (0.341297)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               clu (0.239292)
               

               
               nbm (0.198649)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1745-2005, gnl\|bosTau2\|chr6 (4912263-4912523)
	1745-2005, gnl\|Hg17\|chr8 (71649235-71648987)

	lyg (1.59723)
	amn (0.835422)
	mga (0.801025)
	liv (0.731422)
	lin (0.728014)
	tes (0.623441)
	mgm (0.541028)
	ret (0.514933)
	pro (0.512033)
	tra (0.492368)
	cty (0.41632)
	nmm (0.398406)
	ova (0.387397)
	gul (0.355177)
	cbl (0.344392)
	mcp (0.341297)
	fco (0.314416)
	fat (0.294855)
	cte (0.29274)
	fce (0.271592)
	kid (0.259471)
	thg (0.253582)
	clu (0.239292)
	nbm (0.198649)
	eye (0.170503)
	nje (0.16592)
	csp (0.161186)
	isp (0.150376)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ssp (0.13552)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)