Non-Coding RNA Search

Ss1.1-Pig4-TMW8051H11.3

Sequence:


               
               TAAAACCCGTGGTCAGAGCCAAAGCTGGAGCTGCCGCCGCCGCTGCCGTCTCGGCCGTTT
GGAGCTCCCCCGCGCGGACGATGCCCGCGATGCCCGCGCGGGGCTCGGGGTGGTGAGGCC
CGGGACGCGGGGTAGCTATGGCGACCGGGAGCGCGGCCCGCGGCGCCGCCTGACAGGTGT
GGGGCCCCAGCGCGGCGGCGGCGGCACGGAGCAGGATGTACGCCAAGGGGGGCAAGGGCT
CGGCCGTGCCCTCCGACAGCCAGGCACGCGAGAAGTTGGCGCTGTACGTGTATGAGTACC
TGCTGCACGTTGGTGCCCAGAAGTCAGCCCAGACCTTCCTGTCTGAGATCCGATGGGAGA
AGAACATTACGCTGGGGGAGCCCCCAGGCTTCCTGCATTCCTGGTGGTGCGTGTTCTGGG
ACTTATACTGTGCAGCGCCCGACCGCAGAGAGGCATGCGAGCACTCGAGTGAAGCCAAGG
CCTTCCAGGACTATAGCACTACAGCAGCCCCCAGCCCGGTGATGGGGGGCATGGCCGCCA
GTGATGCAATGGCATCGGGCCCCATGGCACCCGGCTTCTTCCAGCCCTTCATGTCACCGC
GGTTCCCAGGGGGCCCCCGGCCCACCCTGCGGATGCCGAGTCAGCCTCCCGTGGGCCTCC
CCGGCTCCCAGCCCCTCCTCCCTGGCGCCATGGACCCCTCCCCGCGTGCTCAGGGGCATT
CGAGCATGGGCCCGATGCAGAGGGTGACACCTCCTCGAGGCATGACCAGCGTGGGGCCCC
AGAGCTACGGAGGTGGCATGCGGCCCCCACCTAACTCTCTTGCTGGCCCGGGTTTGCCCA
CCATGAACATGGGACCTGGAGTGCGCGGCCCATGGGCCAGCCCCAGCAGCAACTCGATCC
CCTACTCCTCCTCCTCTCCTGGCAGCTACACGGGACCCCCAGGAGGAGGTGGGCCCCCTG
GAACACCCATCATGCCAAGTCCTGGAGACTCCACCAACTCCAGTGAGAACATGTACACCA
TCATGAACCCCATCGGGCCGGCCGCTGGCAGGGCTAATTTCCCGCTTGGCCCTGGTCCGG
AGGGCCCCATGGCCGCCATGAGTGCGATGGAGCCCCACCACGTCAACGGATCCCTGGGCT
CGGGCGATCTGGACGGGTTGCCGAAGAGCTCCCCCGGCGCTGTGGCCGGCCTGAGCAACA
CCCCGGGCACCCCGCGGGACGACGGTGAGATGGCGGCCGCCGGGACCTTCCTGCACCCGT
TCCCGAGCGAAAGCTACTCCCCCGGGATGACCATGAGCGTGTGATGGGGCCGCAGCCCCT
TGCCCACTGCCGGCCTCGGCTTCTGCCCGGCGCCCCTCCCTGGGGCCAAGGTCCAGGGGC
TCGGGTGGTCTGCAGGGTGAGGGTCTGAGGTCACACCTTGGGCAGCTGGACTCCCGGTCA
AGGCTTGGATGGCTGGGAGGCCCCGCGCGAAGGACTCATTTCATTTTATAGAAAAACACA
AGGACCTCAGAGACGTTCTTTCCTGTACGGGCCCTTCCCGCAATTTCTATTTTGTCCGGG
AGGGCTCCTTGGAGAACCTCCTTTCCCCTGGACAGCAGGAGTGGGCCCCACCAATAAACA
TAACTTGATTTTGGTTTTTGGTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACCCGTGGTCAGAGCCAAAGCTGGAGCTGCCGCCGCCGCTGCCGTCTCGGCCGTTT
GGAGCTCCCCCGCGCGGACGATGCCCGCGATGCCCGCGCGGGGCTCGGGGTGGTGAGGCC
CGGGACGCGGGGTAGCTATGGCGACCGGGAGCGCGGCCCGCGGCGCCGCCTGACAGGTGT
GGGGCCCCAGCGCGGCGGCGGCGGCACGGAGCAGGATGTACGCCAAGGGGGGCAAGGGCT
CGGCCGTGCCCTCCGACAGCCAGGCACGCGAGAAGTTGGCGCTGTACGTGTATGAGTACC
TGCTGCACGTTGGTGCCCAGAAGTCAGCCCAGACCTTCCTGTCTGAGATCCGATGGGAGA
AGAACATTACGCTGGGGGAGCCCCCAGGCTTCCTGCATTCCTGGTGGTGCGTGTTCTGGG
ACTTATACTGTGCAGCGCCCGACCGCAGAGAGGCATGCGAGCACTCGAGTGAAGCCAAGG
CCTTCCAGGACTATAGCACTACAGCAGCCCCCAGCCCGGTGATGGGGGGCATGGCCGCCA
GTGATGCAATGGCATCGGGCCCCATGGCACCCGGCTTCTTCCAGCCCTTCATGTCACCGC
GGTTCCCAGGGGGCCCCCGGCCCACCCTGCGGATGCCGAGTCAGCCTCCCGTGGGCCTCC
CCGGCTCCCAGCCCCTCCTCCCTGGCGCCATGGACCCCTCCCCGCGTGCTCAGGGGCATT
CGAGCATGGGCCCGATGCAGAGGGTGACACCTCCTCGAGGCATGACCAGCGTGGGGCCCC
AGAGCTACGGAGGTGGCATGCGGCCCCCACCTAACTCTCTTGCTGGCCCGGGTTTGCCCA
CCATGAACATGGGACCTGGAGTGCGCGGCCCATGGGCCAGCCCCAGCAGCAACTCGATCC
CCTACTCCTCCTCCTCTCCTGGCAGCTACACGGGACCCCCAGGAGGAGGTGGGCCCCCTG
GAACACCCATCATGCCAAGTCCTGGAGACTCCACCAACTCCAGTGAGAACATGTACACCA
TCATGAACCCCATCGGGCCGGCCGCTGGCAGGGCTAATTTCCCGCTTGGCCCTGGTCCGG
AGGGCCCCATGGCCGCCATGAGTGCGATGGAGCCCCACCACGTCAACGGATCCCTGGGCT
CGGGCGATCTGGACGGGTTGCCGAAGAGCTCCCCCGGCGCTGTGGCCGGCCTGAGCAACA
CCCCGGGCACCCCGCGGGACGACGGTGAGATGGCGGCCGCCGGGACCTTCCTGCACCCGT
TCCCGAGCGAAAGCTACTCCCCCGGGATGACCATGAGCGTGTGATGGGGCCGCAGCCCCT
TGCCCACTGCCGGCCTCGGCTTCTGCCCGGCGCCCCTCCCTGGGGCCAAGGTCCAGGGGC
TCGGGTGGTCTGCAGGGTGAGGGTCTGAGGTCACACCTTGGGCAGCTGGACTCCCGGTCA
AGGCTTGGATGGCTGGGAGGCCCCGCGCGAAGGACTCATTTCATTTTATAGAAAAACACA
AGGACCTCAGAGACGTTCTTTCCTGTACGGGCCCTTCCCGCAATTTCTATTTTGTCCGGG
AGGGCTCCTTGGAGAACCTCCTTTCCCCTGGACAGCAGGAGTGGGCCCCACCAATAAACA
TAACTTGATTTTGGTTTTTGGTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9BWW5_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9BWW5_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1313-1493, - strand, RNAz p=0.900814
               

               
               1531-1643, + strand, RNAz p=0.990313

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1313-1493, - strand, RNAz p=0.900814
               

               
               1531-1643, + strand, RNAz p=0.990313

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_001009998, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001009998, +

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-276, gnl|bosTau2|chr7 (1874048-1874315)
               

               
               1-276, gnl|Hg17|chr19 (18391250-18391519)
               


               
               1275-1643, gnl|bosTau2|chr7 (1889260-1889645)
               

               
               1275-1643, gnl|Hg17|chr19 (18406027-18406372)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr7 (1874048-1874315)
               

               
               1-276, gnl|Hg17|chr19 (18391250-18391519)
               


               
               1275-1643, gnl|bosTau2|chr7 (1889260-1889645)
               

               
               1275-1643, gnl|Hg17|chr19 (18406027-18406372)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               ebs (0.473205)
               

               
               fty (0.351679)
               

               
               nco (0.323468)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               fty (0.351679)
               

               
               nco (0.323468)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1313-1493, - strand, RNAz p=0.900814
	1531-1643, + strand, RNAz p=0.990313

	1-276, gnl\|bosTau2\|chr7 (1874048-1874315)
	1-276, gnl\|Hg17\|chr19 (18391250-18391519)

	1275-1643, gnl\|bosTau2\|chr7 (1889260-1889645)
	1275-1643, gnl\|Hg17\|chr19 (18406027-18406372)

	ebs (0.473205)
	fty (0.351679)
	nco (0.323468)
	pla (0.267344)
	eep (0.245128)
	nep (0.183925)
	eye (0.170503)
	pty (0.142714)
	nmm (0.132802)
	ese (0.126502)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)
	eje (0.0988338)